1UJK - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH C-TERMINAL PHOSPHOPEPTIDE FROM BACE

Authors :   T. Shiba, S. Kametaka, M. Kawasaki, M. Shibata, S. Waguri, Y. Uchiyama, S. Wakatsuki

Date :   05 Aug 03 (Deposition) - 11 May 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,C  (1x)
Biol. Unit 2: B,D  (1x)
Biol. Unit 3: A,B,C,D  (1x)

Keywords :   Protein-Peptide Complex, Protein Transport, Adaptor Protein, Protein Transport/Hydrolase Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Shiba, S. Kametaka, M. Kawasaki, M. Shibata, S. Waguri, Y. Uchiyama, S. Wakatsuki
Insights Into The Phosphoregulation Of Beta-Secretase Sorting Signal By The Vhs Domain Of Gga1
Traffic V. 5 437 2004
PubMed-ID: 15117318 | Reference-DOI: 10.1111/J.1600-0854.2004.00188.X
(for further references see the PDB file header)

Molecule 1 - ADP-RIBOSYLATION FACTOR BINDING PROTEIN GGA1
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Plasmid	:	PGEX4T-2
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Fragment	:	VHS DOMAIN, N-TERMINAL DOMAIN
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	GGA1

Molecule 2 - C-TERMINAL PEPTIDE FROM BETA-SECRETASE
	Chains	:	C, D
	EC Number	:	3.4.23.-
	Engineered	:	YES
	Other Details	:	SYNTHESIZED PEPTIDE
	Synonym	:	C-TERMINAL PEPTIDE FROM BACE
	Synthetic	:	YES

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A		C
Biological Unit 2 (1x)	:		B		D
Biological Unit 3 (1x)	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	IOD	6	Ligand/Ion	IODIDE ION
2	SEP	2	Mod. Amino Acid	PHOSPHOSERINE

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	IOD	3	Ligand/Ion	IODIDE ION
2	SEP	1	Mod. Amino Acid	PHOSPHOSERINE

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	IOD	3	Ligand/Ion	IODIDE ION
2	SEP	1	Mod. Amino Acid	PHOSPHOSERINE

Biological Unit 3 (2, 8)

No.	Name	Count	Type	Full Name
1	IOD	6	Ligand/Ion	IODIDE ION
2	SEP	2	Mod. Amino Acid	PHOSPHOSERINE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TRP B:27 , GLN B:137	BINDING SITE FOR RESIDUE IOD B 148
2	AC2	SOFTWARE	ASN B:38 , GLY B:78	BINDING SITE FOR RESIDUE IOD B 149
3	AC3	SOFTWARE	PRO A:58 , GLN A:59 , LEU B:50 , HIS B:53	BINDING SITE FOR RESIDUE IOD A 148
4	AC4	SOFTWARE	LEU A:50 , HIS A:53 , PRO B:58 , GLN B:59	BINDING SITE FOR RESIDUE IOD A 149

Asymmetric Unit

No.	Residues
1	A:34	-	A:73
2	A:77	-	B:77
3	B:34	-	B:73

(no "Cis Peptide Bond" information available for 1UJK)

(no "SAP(SNP)/Variant" information available for 1UJK)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	VHS	PS50179	VHS domain profile.	GGA1_HUMAN	17-147	2	A:17-146 B:17-146

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	VHS	PS50179	VHS domain profile.	GGA1_HUMAN	17-147	1	A:17-146 -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	VHS	PS50179	VHS domain profile.	GGA1_HUMAN	17-147	1	- B:17-146

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	VHS	PS50179	VHS domain profile.	GGA1_HUMAN	17-147	2	A:17-146 B:17-146

Asymmetric Unit (7, 14)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1b	ENST00000313005	1b	ENSE00002169377	chr11:117186972-117186251	722	BACE1_HUMAN	1-87	87	0	-	-
1.2d	ENST00000313005	2d	ENSE00001779698	chr11:117167677-117167589	89	BACE1_HUMAN	88-117	30	0	-	-
1.4c	ENST00000313005	4c	ENSE00001602221	chr11:117166063-117165847	217	BACE1_HUMAN	117-189	73	0	-	-
1.5b	ENST00000313005	5b	ENSE00001732292	chr11:117164724-117164587	138	BACE1_HUMAN	190-235	46	0	-	-
1.6b	ENST00000313005	6b	ENSE00001231658	chr11:117163904-117163770	135	BACE1_HUMAN	236-280	45	0	-	-
1.7c	ENST00000313005	7c	ENSE00001053358	chr11:117162529-117162428	102	BACE1_HUMAN	281-314	34	0	-	-
1.8b	ENST00000313005	8b	ENSE00001053366	chr11:117161765-117161616	150	BACE1_HUMAN	315-364	50	0	-	-
1.9d	ENST00000313005	9d	ENSE00001385289	chr11:117161375-117161204	172	BACE1_HUMAN	365-422	58	0	-	-
1.10f	ENST00000313005	10f	ENSE00002041784	chr11:117160523-117156402	4122	BACE1_HUMAN	422-501	80	2	C:6-12 D:6-12	7 7

2.1a	ENST00000343632	1a	ENSE00001813421	chr22:38004482-38004910	429	GGA1_HUMAN	1-15	15	2	A:2-15 B:7-15	14 9
2.7c	ENST00000343632	7c	ENSE00002140158	chr22:38010197-38010281	85	GGA1_HUMAN	15-43	29	2	A:15-43 B:15-43	29 29
2.8a	ENST00000343632	8a	ENSE00001612880	chr22:38012929-38013004	76	GGA1_HUMAN	43-68	26	2	A:43-68 B:43-68	26 26
2.9c	ENST00000343632	9c	ENSE00001683976	chr22:38014455-38014553	99	GGA1_HUMAN	69-101	33	2	A:69-101 B:69-101	33 33
2.10f	ENST00000343632	10f	ENSE00000880168	chr22:38016245-38016368	124	GGA1_HUMAN	102-143	42	2	A:102-143 B:102-143	42 42
2.11b	ENST00000343632	11b	ENSE00000880169	chr22:38016820-38016920	101	GGA1_HUMAN	143-176	34	2	A:143-146 B:143-146	4 4
2.12c	ENST00000343632	12c	ENSE00000653934	chr22:38017623-38017703	81	GGA1_HUMAN	177-203	27	0	-	-
2.13	ENST00000343632	13	ENSE00000880172	chr22:38019334-38019474	141	GGA1_HUMAN	204-250	47	0	-	-
2.14b	ENST00000343632	14b	ENSE00000880174	chr22:38019559-38019640	82	GGA1_HUMAN	251-278	28	0	-	-
2.14e	ENST00000343632	14e	ENSE00001286815	chr22:38020976-38021083	108	GGA1_HUMAN	278-314	37	0	-	-
2.15a	ENST00000343632	15a	ENSE00000653938	chr22:38021804-38021956	153	GGA1_HUMAN	314-365	52	0	-	-
2.16	ENST00000343632	16	ENSE00000653944	chr22:38025469-38025533	65	GGA1_HUMAN	365-386	22	0	-	-
2.17a	ENST00000343632	17a	ENSE00000653945	chr22:38026005-38026177	173	GGA1_HUMAN	387-444	58	0	-	-
2.18b	ENST00000343632	18b	ENSE00000653946	chr22:38026910-38027106	197	GGA1_HUMAN	444-510	67	0	-	-
2.19	ENST00000343632	19	ENSE00000653947	chr22:38028003-38028172	170	GGA1_HUMAN	510-566	57	0	-	-
2.20	ENST00000343632	20	ENSE00000653948	chr22:38028412-38028522	111	GGA1_HUMAN	567-603	37	0	-	-
2.21d	ENST00000343632	21d	ENSE00001823052	chr22:38028608-38029571	964	GGA1_HUMAN	604-639	36	0	-	-

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:145
 aligned with GGA1_HUMAN | Q9UJY5 from UniProtKB/Swiss-Prot  Length:639

    Alignment length:145
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141     
           GGA1_HUMAN     2 EPAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVK 146
               SCOP domains d1ujka_ A: ADP-ribosylation factor binding protein Gga1                                                                                           SCOP domains
               CATH domains 1ujkA00 A:2-146  [code=1.25.40.90, no name defined]                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh..hhhhhhhhhh.......hhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------VHS  PDB: A:17-146 UniProt: 17-147                                                                                                 PROSITE
           Transcript 2 (1) Exon 2.1a     ---------------------------Exon 2.8a  PDB: A:43-68   Exon 2.9c  PDB: A:69-101         Exon 2.10f  PDB: A:102-143                --- Transcript 2 (1)
           Transcript 2 (2) -------------Exon 2.7c  PDB: A:15-43      ---------------------------------------------------------------------------------------------------2.11 Transcript 2 (2)
                 1ujk A   2 EPAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVK 146
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141

Chain B from PDB  Type:PROTEIN  Length:140
 aligned with GGA1_HUMAN | Q9UJY5 from UniProtKB/Swiss-Prot  Length:639

    Alignment length:140
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146
           GGA1_HUMAN     7 PETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVK 146
               SCOP domains d1ujkb_ B: ADP-ribosylation factor binding protein Gga1                                                                                      SCOP domains
               CATH domains 1ujkB00 B:7-146  [code=1.25.40.90, no name defined]                                                                                          CATH domains
           Pfam domains (1) VHS-1ujkB01 B:7-143                                                                                                                      --- Pfam domains (1)
           Pfam domains (2) VHS-1ujkB02 B:7-143                                                                                                                      --- Pfam domains (2)
         Sec.struct. author ..hhhhhhhhhh.......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------VHS  PDB: B:17-146 UniProt: 17-147                                                                                                 PROSITE
           Transcript 2 (1) Exon 2.1a---------------------------Exon 2.8a  PDB: B:43-68   Exon 2.9c  PDB: B:69-101         Exon 2.10f  PDB: B:102-143                --- Transcript 2 (1)
           Transcript 2 (2) --------Exon 2.7c  PDB: B:15-43      ---------------------------------------------------------------------------------------------------2.11 Transcript 2 (2)
                 1ujk B   7 PETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVK 146
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146

Chain C from PDB  Type:PROTEIN  Length:7
 aligned with BACE1_HUMAN | P56817 from UniProtKB/Swiss-Prot  Length:501

    Alignment length:7
          BACE1_HUMAN   495 DDISLLK 501
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
               Transcript 1 1.10f   Transcript 1
                 1ujk C   6 DDIsLLK  12
                               |   
                               |   
                               9-SEP

Chain D from PDB  Type:PROTEIN  Length:7
 aligned with BACE1_HUMAN | P56817 from UniProtKB/Swiss-Prot  Length:501

    Alignment length:7
          BACE1_HUMAN   495 DDISLLK 501
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
               Transcript 1 1.10f   Transcript 1
                 1ujk D   6 DDIsLLK  12
                               |   
                               9-SEP

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: alpha-alpha superhelix (690)

Superfamily: ENTH/VHS domain (36)

Family: VHS domain (16)

Protein domain: ADP-ribosylation factor binding protein Gga1 (5)

Human (Homo sapiens) [TaxId: 9606] (5)

1a	d1ujka_	A:
1b	d1ujkb_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Alpha Horseshoe (399)

Topology: Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat (320)

Homologous Superfamily: [code=1.25.40.90, no name defined] (33)

Human (Homo sapiens) (20)

1a	1ujkB00	B:7-146
1b	1ujkA00	A:2-146

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: ENTH_VHS (15)

Family: VHS (11)

Homo sapiens (Human) (11)

1a	VHS-1ujkB01	B:7-143
1b	VHS-1ujkB02	B:7-143

Asymmetric Unit(hide GO term definitions)

Chain A,B (GGA1_HUMAN | Q9UJY5)

molecular function
	GO:0003674	molecular_function	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0044267	cellular protein metabolic process	The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification.
	GO:0006886	intracellular protein transport	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
	GO:0045732	positive regulation of protein catabolic process	Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
	GO:0015031	protein transport	The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:1901998	toxin transport	The directed movement of a toxin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
	GO:0016192	vesicle-mediated transport	A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
cellular component
	GO:0005794	Golgi apparatus	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
	GO:0030131	clathrin adaptor complex	A membrane coat adaptor complex that links clathrin to a membrane.
	GO:0005768	endosome	A vacuole to which materials ingested by endocytosis are delivered.
	GO:0010008	endosome membrane	The lipid bilayer surrounding an endosome.
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
	GO:0043231	intracellular membrane-bounded organelle	Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.

Chain C,D (BACE1_HUMAN | P56817)

molecular function
	GO:0001540	amyloid-beta binding	Interacting selectively and non-covalently with amyloid-beta peptide/protein and/or its precursor.
	GO:0004190	aspartic-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile.
	GO:0008798	beta-aspartyl-peptidase activity	Catalysis of the cleavage of a beta-linked aspartic residue from the N-terminus of a polypeptide.
	GO:0004175	endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
	GO:0019899	enzyme binding	Interacting selectively and non-covalently with any enzyme.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0050435	amyloid-beta metabolic process	The chemical reactions and pathways involving amyloid-beta, a glycoprotein associated with Alzheimer's disease, and its precursor, amyloid precursor protein (APP).
	GO:0044267	cellular protein metabolic process	The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification.
	GO:0006509	membrane protein ectodomain proteolysis	The proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain).
	GO:0030163	protein catabolic process	The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
	GO:0005794	Golgi apparatus	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
	GO:0070931	Golgi-associated vesicle lumen	The volume enclosed by the membrane of a Golgi-associated vesicle.
	GO:0030424	axon	The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter.
	GO:0009986	cell surface	The external part of the cell wall and/or plasma membrane.
	GO:0031410	cytoplasmic vesicle	A vesicle found in the cytoplasm of a cell.
	GO:0030659	cytoplasmic vesicle membrane	The lipid bilayer surrounding a cytoplasmic vesicle.
	GO:0005783	endoplasmic reticulum	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
	GO:0005788	endoplasmic reticulum lumen	The volume enclosed by the membranes of the endoplasmic reticulum.
	GO:0005768	endosome	A vacuole to which materials ingested by endocytosis are delivered.
	GO:0010008	endosome membrane	The lipid bilayer surrounding an endosome.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0005887	integral component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0005770	late endosome	A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005771	multivesicular body	A type of endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles; membrane proteins that enter the internal vesicles are sequestered from the cytoplasm.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
	GO:0005802	trans-Golgi network	The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination.

Asymmetric Unit
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	Cis Peptide Bonds
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Biological Units
	Complete Structure
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		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
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Access by PDB/NDB ID
	1ujk
		Family and Domain Information	:	ProDom \| SYSTERS
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
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	BACE1_HUMAN \| P56817
		Comparative Protein Structure Models	:	ModBase
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		Protein-protein Interaction	:	DIP
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	GGA1_HUMAN \| Q9UJY5
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		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

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	3.4.23.-
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		Pathway	:	KEGG \| MetaCyc

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		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

1jwf	THE SAME PROTEIN WITHOUT PEPTIDE.
1jwg	THE SAME PROTEIN COMPLEXED WITH CI-MPR PEPTIDE.
1ujj	THE SAME PROTEIN COMPLEXED WITH UNPHOSPHORYLATED PEPTIDE.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (4, 4)

SS Bonds (3, 3)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (7, 14)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (1, 2)

Gene Ontology (41, 47)

Visualization

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Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File