1UHG - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF S-OVALBUMIN AT 1.9 ANGSTROM RESOLUTION

Authors :   M. Yamasaki, N. Takahashi, M. Hirose

Date :   03 Jul 03 (Deposition) - 22 Jul 03 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Allergen, Egg White Protein, Serpin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Yamasaki, N. Takahashi, M. Hirose
Crystal Structure Of S-Ovalbumin As A Non-Loop-Inserted Thermostabilized Serpin Form
J. Biol. Chem. V. 278 35524 2003
PubMed-ID: 12840013 | Reference-DOI: 10.1074/JBC.M305926200

Molecule 1 - OVALBUMIN
	Chains	:	A, B, C, D
	Organism Common	:	CHICKEN
	Organism Scientific	:	GALLUS GALLUS
	Organism Taxid	:	9031
	Synonym	:	S-OVALBUMIN
	Tissue	:	EGG WHITE

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 33)

No.	Name	Count	Type	Full Name
1	DSN	12	Mod. Amino Acid	D-SERINE
2	NAG	7	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	SEP	7	Mod. Amino Acid	PHOSPHOSERINE
4	SO4	7	Ligand/Ion	SULFATE ION

Biological Unit 1 (4, 9)

No.	Name	Count	Type	Full Name
1	DSN	3	Mod. Amino Acid	D-SERINE
2	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	SEP	2	Mod. Amino Acid	PHOSPHOSERINE
4	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (4, 9)

No.	Name	Count	Type	Full Name
1	DSN	3	Mod. Amino Acid	D-SERINE
2	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	SEP	2	Mod. Amino Acid	PHOSPHOSERINE
4	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 3 (4, 7)

No.	Name	Count	Type	Full Name
1	DSN	3	Mod. Amino Acid	D-SERINE
2	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	SEP	1	Mod. Amino Acid	PHOSPHOSERINE
4	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 4 (4, 8)

No.	Name	Count	Type	Full Name
1	DSN	3	Mod. Amino Acid	D-SERINE
2	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	SEP	2	Mod. Amino Acid	PHOSPHOSERINE
4	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:292 , SER A:295 , GLN A:325 , NAG A:387 , HOH A:1188	BINDING SITE FOR RESIDUE NAG A 386
02	AC2	SOFTWARE	THR A:294 , PHE A:306 , ILE A:323 , SER A:324 , NAG A:386 , HOH A:1044 , HOH A:1177 , HOH A:1189	BINDING SITE FOR RESIDUE NAG A 387
03	AC3	SOFTWARE	GLN B:162 , ASN B:292 , MET B:298 , GLN B:325 , NAG B:387 , HOH B:2195 , HOH B:2196	BINDING SITE FOR RESIDUE NAG B 386
04	AC4	SOFTWARE	NAG B:386	BINDING SITE FOR RESIDUE NAG B 387
05	AC5	SOFTWARE	HOH A:1248 , GLN C:162 , ASN C:292 , MET C:298 , GLN C:325 , NAG C:387 , HOH C:3149	BINDING SITE FOR RESIDUE NAG C 386
06	AC6	SOFTWARE	MET C:298 , NAG C:386 , HOH C:3065	BINDING SITE FOR RESIDUE NAG C 387
07	AC7	SOFTWARE	GLN D:162 , ASN D:292 , MET D:298 , GLN D:325	BINDING SITE FOR RESIDUE NAG D 386
08	AC8	SOFTWARE	LEU A:101 , ARG A:126 , GLY A:127 , HOH A:1048 , HOH A:1163 , HOH A:1182 , HOH A:1213	BINDING SITE FOR RESIDUE SO4 A 401
09	AC9	SOFTWARE	ARG A:284 , LYS A:286	BINDING SITE FOR RESIDUE SO4 A 402
10	BC1	SOFTWARE	ARG B:284 , LYS B:286	BINDING SITE FOR RESIDUE SO4 B 1401
11	BC2	SOFTWARE	LYS B:189 , ASP B:192 , TYR B:212 , HOH B:2048 , HOH B:2090 , HOH B:2151 , HOH B:2184 , HOH B:2197	BINDING SITE FOR RESIDUE SO4 B 1402
12	BC3	SOFTWARE	ARG C:284 , LYS C:286 , GLU C:333	BINDING SITE FOR RESIDUE SO4 C 2401
13	BC4	SOFTWARE	MET D:222 , ALA D:223 , SER D:224 , SER D:317	BINDING SITE FOR RESIDUE SO4 D 3401
14	BC5	SOFTWARE	ARG C:158 , ARG D:284 , LYS D:286 , GLU D:333	BINDING SITE FOR RESIDUE SO4 D 3402

Asymmetric Unit

No.	Residues
1	A:73	-	A:120
2	B:73	-	B:120
3	C:73	-	C:120
4	D:73	-	D:120

(no "Cis Peptide Bond" information available for 1UHG)

Asymmetric Unit (2, 8)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_OVAL_CHICK_001 *	L	283	F	OVAL_CHICK	---	---	A/B/C/D	L	282	F
2	UniProt	VAR_OVAL_CHICK_002 *	N	312	D	OVAL_CHICK	---	---	A/B/C/D	N	311	D
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_OVAL_CHICK_001 *	L	283	F	OVAL_CHICK	---	---	A	L	282	F
2	UniProt	VAR_OVAL_CHICK_002 *	N	312	D	OVAL_CHICK	---	---	A	N	311	D
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_OVAL_CHICK_001 *	L	283	F	OVAL_CHICK	---	---	B	L	282	F
2	UniProt	VAR_OVAL_CHICK_002 *	N	312	D	OVAL_CHICK	---	---	B	N	311	D
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_OVAL_CHICK_001 *	L	283	F	OVAL_CHICK	---	---	C	L	282	F
2	UniProt	VAR_OVAL_CHICK_002 *	N	312	D	OVAL_CHICK	---	---	C	N	311	D
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_OVAL_CHICK_001 *	L	283	F	OVAL_CHICK	---	---	D	L	282	F
2	UniProt	VAR_OVAL_CHICK_002 *	N	312	D	OVAL_CHICK	---	---	D	N	311	D
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SERPIN	PS00284	Serpins signature.	OVAL_CHICK	359-369	4	A:358-368 B:358-368 C:358-368 D:358-368

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SERPIN	PS00284	Serpins signature.	OVAL_CHICK	359-369	1	A:358-368 - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SERPIN	PS00284	Serpins signature.	OVAL_CHICK	359-369	1	- B:358-368 - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SERPIN	PS00284	Serpins signature.	OVAL_CHICK	359-369	1	- - C:358-368 -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SERPIN	PS00284	Serpins signature.	OVAL_CHICK	359-369	1	- - - D:358-368

Asymmetric Unit (7, 28)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSGALT00000037195	1	ENSGALE00000242697	chr2:68913487-68913441	47	OVAL_CHICK	-	0	0	-	-
1.2a	ENSGALT00000037195	2a	ENSGALE00000242696	chr2:68911851-68911667	185	OVAL_CHICK	1-56	56	4	A:1-55 B:1-55 C:1-55 D:1-55	55 55 55 55
1.3	ENSGALT00000037195	3	ENSGALE00000138911	chr2:68911415-68911365	51	OVAL_CHICK	57-73	17	4	A:56-72 B:56-72 C:56-72 D:56-72	17 17 17 17
1.4	ENSGALT00000037195	4	ENSGALE00000138907	chr2:68910783-68910655	129	OVAL_CHICK	74-116	43	4	A:73-115 B:73-115 C:73-115 D:73-115	43 43 43 43
1.5	ENSGALT00000037195	5	ENSGALE00000138912	chr2:68910253-68910136	118	OVAL_CHICK	117-156	40	4	A:116-155 B:116-155 C:116-155 D:116-155	40 40 40 40
1.6	ENSGALT00000037195	6	ENSGALE00000138908	chr2:68909176-68909034	143	OVAL_CHICK	156-203	48	4	A:155-201 B:155-202 C:155-202 D:155-202	47 48 48 48
1.7	ENSGALT00000037195	7	ENSGALE00000138909	chr2:68908697-68908542	156	OVAL_CHICK	204-255	52	4	A:204-254 B:203-254 C:203-254 D:203-254	51 52 52 52
1.8b	ENSGALT00000037195	8b	ENSGALE00000242681	chr2:68906957-68905915	1043	OVAL_CHICK	256-386	131	4	A:255-385 B:255-385 C:255-385 (gaps) D:255-385	131 131 131 131

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:383
 aligned with OVAL_CHICK | P01012 from UniProtKB/Swiss-Prot  Length:386

    Alignment length:385
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381     
           OVAL_CHICK     2 GSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGREVVGSAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP 386
               SCOP domains d1uhga_ A: Ovalbumin                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1uhgA02 A:1-185,A:285-334 Antithrombin, subunit I, domain 2                                                                                                                              1uhgA01 A:186-28  4,A:335-379 Alpha-1-antitrypsin, domain 1                                        1uhgA02 A:1-185,A:285-334                         1uhgA01 A:186-284,A:335-379                  ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhh..hhhhhhhhhhhhh.......hhhhhh........hhhhhhhhhhhh.....eeeeeeeeeeee.....hhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhhh..................eeeeeeeeeee.eee..hhhhheeeee...--..eeeeeeeeeeeeeeeeehhh.eeeeeee.....eeeeeeee....hhhhhhhhhhhhhhhhhh.....eeeeeeeeee.eeeeeeeehhhhhhhhh.hhhhh...............eeeeeeeeeeee...eee..hhhhhhhhhh....eee....eeeeeee.....eeeeeee... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F----------------------------D-------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SERPIN     ----------------- PROSITE
           Transcript 1 (1) Exon 1.2a  PDB: A:1-55 UniProt: 1-56 [INCOMPLETE]      Exon 1.3         Exon 1.4  PDB: A:73-115 UniProt: 74-116    Exon 1.5  PDB: A:116-155                -----------------------------------------------Exon 1.7  PDB: A:204-254 UniProt: 204-255           Exon 1.8b  PDB: A:255-385 UniProt: 256-386                                                                                          Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: A:155-201 UniProt: 156-203       --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1uhg A   1 GSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDsIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPsSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVT--ESKPVQMMYQIGLFRVASMASEKMKILELPFAsGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAEsLKISQAVHAAHAEINEAGREVVGsAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP 385
                                    10        20        30        40        50        60       |70        80        90       100       110       120       130       140       150       160   |   170       180       190       200|  |   210       220       230     | 240       250       260       270       280       290       300       310       320       330       340   |   350       360       370       380     
                                                                                              68-SEP                                                                                         164-DSN                              201  |                             236-DSN                                                                             320-DSN                 344-SEP                                     
                                                                                                                                                                                                                                     204

Chain B from PDB  Type:PROTEIN  Length:385
 aligned with OVAL_CHICK | P01012 from UniProtKB/Swiss-Prot  Length:386

    Alignment length:385
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381     
           OVAL_CHICK     2 GSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGREVVGSAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP 386
               SCOP domains d1uhgb_ B: Ovalbumin                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1uhgB02 B:1-185,B:285-334 Antithrombin, subunit I, domain 2                                                                                                                              1uhgB01 B:186-284,B:335-380 Alpha-1-antitrypsin, domain 1                                          1uhgB02 B:1-185,B:285-334                         1uhgB01 B:186-284,B:335-380                   ----- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhh..hhhhhhhhhhhhh.........hhhhh.......hhhhhhhhhhhh.....eeeeeeeeeeee.....hhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhhh..................eeeeeeeeeee.eee..hhhhheeeeee.....eeeeeeeeeeeeeeeeee....eeeeeee.....eeeeeeee....hhhhhhhhhhhhhhhhhh.....eeeeeeeeee.eeeeeeeehhhhhhhhh.hhhhh.................eeeeeeeeee...eee..hhhhhhhhhhhh..eee....eeeeeee.....eeeeeee... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F----------------------------D-------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SERPIN     ----------------- PROSITE
           Transcript 1 (1) Exon 1.2a  PDB: B:1-55 UniProt: 1-56 [INCOMPLETE]      Exon 1.3         Exon 1.4  PDB: B:73-115 UniProt: 74-116    Exon 1.5  PDB: B:116-155                -----------------------------------------------Exon 1.7  PDB: B:203-254 UniProt: 204-255           Exon 1.8b  PDB: B:255-385 UniProt: 256-386                                                                                          Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: B:155-202 UniProt: 156-203       --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1uhg B   1 GSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDsIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPsSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFAsGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAEsLKISQAVHAAHAEINEAGREVVGsAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP 385
                                    10        20        30        40        50        60       |70        80        90       100       110       120       130       140       150       160   |   170       180       190       200       210       220       230     | 240       250       260       270       280       290       300       310       320       330       340   |   350       360       370       380     
                                                                                              68-SEP                                                                                         164-DSN                                                                 236-DSN                                                                             320-DSN                 344-SEP

Chain C from PDB  Type:PROTEIN  Length:374
 aligned with OVAL_CHICK | P01012 from UniProtKB/Swiss-Prot  Length:386

    Alignment length:385
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381     
           OVAL_CHICK     2 GSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGREVVGSAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP 386
               SCOP domains d1uhgc_ C: Ovalbumin                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1uhgC02 C:1-185,C:285-334 Antithrombin, subunit I, domain 2                                                                                                                              1uhgC01 C:186-284,C:335-380 Alpha-1-antitrypsin, domain 1                                          1uhgC02 C:1-185,C:285-334                         1uhgC01            C:186-284,C:335-380        ----- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhh..hhhhhhhhhhhh...........hhhhh......hhhhhhhhhhhhh....eeeeeeeeeeee.....hhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhhh..................eeeeeeeeeee.eee..hhhhheeeeee.....eeeeeeeeeeeeeeeeee....eeeeeee.....eeeeeeee....hhhhhhh..hhhhhhhhh.....eeeeeeeeee.eeeeeeeehhhhhhhhh.hhhhh...............eeeeeeeeeeee...eee..-----------...eee....eeeeeee.....eeeeeee... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F----------------------------D-------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SERPIN     ----------------- PROSITE
           Transcript 1 (1) Exon 1.2a  PDB: C:1-55 UniProt: 1-56 [INCOMPLETE]      Exon 1.3         Exon 1.4  PDB: C:73-115 UniProt: 74-116    Exon 1.5  PDB: C:116-155                -----------------------------------------------Exon 1.7  PDB: C:203-254 UniProt: 204-255           Exon 1.8b  PDB: C:255-385 (gaps) UniProt: 256-386                                                                                   Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: C:155-202 UniProt: 156-203       --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1uhg C   1 GSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDsIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPsSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFAsGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAEsLKISQAVHAAHAEINEAGREVV-----------VSEEFRADHPFLFCIKHIATNAVLFFGRCVSP 385
                                    10        20        30        40        50        60       |70        80        90       100       110       120       130       140       150       160   |   170       180       190       200       210       220       230     | 240       250       260       270       280       290       300       310       320       330       340 |       -   |   360       370       380     
                                                                                              68-SEP                                                                                         164-DSN                                                                 236-DSN                                                                             320-DSN               342         354

Chain D from PDB  Type:PROTEIN  Length:385
 aligned with OVAL_CHICK | P01012 from UniProtKB/Swiss-Prot  Length:386

    Alignment length:385
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381     
           OVAL_CHICK     2 GSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGREVVGSAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP 386
               SCOP domains d1uhgd_ D: Ovalbumin                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1uhgD02 D:1-185,D:285-334 Antithrombin, subunit I, domain 2                                                                                                                              1uhgD01 D:186-284,D:335-380 Alpha-1-antitrypsin, domain 1                                          1uhgD02 D:1-185,D:285-334                         1uhgD01 D:186-284,D:335-380                   ----- CATH domains
           Pfam domains (1) ----Serpin-1uhgD01 D:5-384                                                                                                                                                                                                                                                                                                                                                                      - Pfam domains (1)
           Pfam domains (2) ----Serpin-1uhgD02 D:5-384                                                                                                                                                                                                                                                                                                                                                                      - Pfam domains (2)
           Pfam domains (3) ----Serpin-1uhgD03 D:5-384                                                                                                                                                                                                                                                                                                                                                                      - Pfam domains (3)
           Pfam domains (4) ----Serpin-1uhgD04 D:5-384                                                                                                                                                                                                                                                                                                                                                                      - Pfam domains (4)
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhh..hhhhhhhhhhhhh..........hhhhh......hhhhhhhhhhhh.....eeeeeeeeeeee.....hhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhhh..................eeeeeeeeeee.eee..hhhhheeeeeeee..eeeeeeeeeeeeeeeeeee....eeeeeee.....eeeeeeee.hhhhhhhhhhhhhhhhhhhhh.....eeeeeeeeee.eeeeeeeehhhhhhhhh.hhhhh.................eeeeeeeeee...eee..hhhhhhhhhhhh..eee....eeeeeee.....eeeeeee... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F----------------------------D-------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SERPIN     ----------------- PROSITE
           Transcript 1 (1) Exon 1.2a  PDB: D:1-55 UniProt: 1-56 [INCOMPLETE]      Exon 1.3         Exon 1.4  PDB: D:73-115 UniProt: 74-116    Exon 1.5  PDB: D:116-155                -----------------------------------------------Exon 1.7  PDB: D:203-254 UniProt: 204-255           Exon 1.8b  PDB: D:255-385 UniProt: 256-386                                                                                          Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: D:155-202 UniProt: 156-203       --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1uhg D   1 GSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDsIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPsSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFAsGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAEsLKISQAVHAAHAEINEAGREVVGsAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP 385
                                    10        20        30        40        50        60       |70        80        90       100       110       120       130       140       150       160   |   170       180       190       200       210       220       230     | 240       250       260       270       280       290       300       310       320       330       340   |   350       360       370       380     
                                                                                              68-SEP                                                                                         164-DSN                                                                 236-DSN                                                                             320-DSN                 344-SEP

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Multi-domain proteins (alpha and beta) (2421)

Fold: Serpins (120)

Superfamily: Serpins (120)

Family: Serpins (100)

Protein domain: Ovalbumin (3)

Chicken (Gallus gallus) [TaxId: 9031] (3)

1a	d1uhga_	A:
1b	d1uhgb_	B:
1c	d1uhgc_	C:
1d	d1uhgd_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Antithrombin; Chain I, domain 2 (100)

Homologous Superfamily: Antithrombin, subunit I, domain 2 (100)

Chicken (Gallus gallus) (7)

1a	1uhgA02	A:1-185,A:285-334
1b	1uhgD02	D:1-185,D:285-334
1c	1uhgB02	B:1-185,B:285-334
1d	1uhgC02	C:1-185,C:285-334

Class: Mainly Beta (13760)

Architecture: Roll (1513)

Topology: Alpha-1-antitrypsin; domain 1 (101)

Homologous Superfamily: Alpha-1-antitrypsin, domain 1 (101)

Chicken (Gallus gallus) (7)

2a	1uhgC01	C:186-284,C:335-380
2b	1uhgA01	A:186-284,A:335-379
2c	1uhgB01	B:186-284,B:335-380
2d	1uhgD01	D:186-284,D:335-380

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Serpin] (63)

Family: Serpin (63)

Gallus gallus (Chicken) (3)

1a	Serpin-1uhgD01	D:5-384
1b	Serpin-1uhgD02	D:5-384
1c	Serpin-1uhgD03	D:5-384
1d	Serpin-1uhgD04	D:5-384

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (OVAL_CHICK | P01012)

molecular function
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004867	serine-type endopeptidase inhibitor activity	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme.
biological process
	GO:0002479	antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent	The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a TAP (transporter associated with antigen processing) pathway. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell and is dependent on TAP transport from the cytosol to ER for association with the MHC class I molecule. Class I here refers to classical class I molecules.
	GO:0002480	antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent	The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a pathway not requiring TAP (transporter associated with antigen processing). The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell. Class I here refers to classical class I molecules.
	GO:0010951	negative regulation of endopeptidase activity	Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0031905	early endosome lumen	The volume enclosed by the membrane of an early endosome.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0045335	phagocytic vesicle	A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis.
	GO:0032010	phagolysosome	A membrane-bounded intracellular vesicle formed by maturation of an early phagosome following the ingestion of particulate material by phagocytosis; during maturation, phagosomes acquire markers of late endosomes and lysosomes.

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(no "Related Entries Specified in the PDB File" available for 1UHG)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 33)

Sites (14, 14)

SS Bonds (4, 4)

Cis Peptide Bonds (0, 0)

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SAPs(SNPs)/Variants (2, 8)

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Exons (7, 28)

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