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1UHG
Biol. Unit 3
Info
Asym.Unit (267 KB)
Biol.Unit 1 (69 KB)
Biol.Unit 2 (69 KB)
Biol.Unit 3 (68 KB)
Biol.Unit 4 (69 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF S-OVALBUMIN AT 1.9 ANGSTROM RESOLUTION
Authors
:
M. Yamasaki, N. Takahashi, M. Hirose
Date
:
03 Jul 03 (Deposition) - 22 Jul 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Allergen, Egg White Protein, Serpin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Yamasaki, N. Takahashi, M. Hirose
Crystal Structure Of S-Ovalbumin As A Non-Loop-Inserted Thermostabilized Serpin Form
J. Biol. Chem. V. 278 35524 2003
[
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: D-SERINE (DSNa)
1b: D-SERINE (DSNb)
1c: D-SERINE (DSNc)
1d: D-SERINE (DSNd)
1e: D-SERINE (DSNe)
1f: D-SERINE (DSNf)
1g: D-SERINE (DSNg)
1h: D-SERINE (DSNh)
1i: D-SERINE (DSNi)
1j: D-SERINE (DSNj)
1k: D-SERINE (DSNk)
1l: D-SERINE (DSNl)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3a: PHOSPHOSERINE (SEPa)
3b: PHOSPHOSERINE (SEPb)
3c: PHOSPHOSERINE (SEPc)
3d: PHOSPHOSERINE (SEPd)
3e: PHOSPHOSERINE (SEPe)
3f: PHOSPHOSERINE (SEPf)
3g: PHOSPHOSERINE (SEPg)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DSN
3
Mod. Amino Acid
D-SERINE
2
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
4
SO4
1
Ligand/Ion
SULFATE ION
[
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]
Sites
(4, 4)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: BC3 (SOFTWARE)
4: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
HOH A:1248 , GLN C:162 , ASN C:292 , MET C:298 , GLN C:325 , NAG C:387 , HOH C:3149
BINDING SITE FOR RESIDUE NAG C 386
2
AC6
SOFTWARE
MET C:298 , NAG C:386 , HOH C:3065
BINDING SITE FOR RESIDUE NAG C 387
3
BC3
SOFTWARE
ARG C:284 , LYS C:286 , GLU C:333
BINDING SITE FOR RESIDUE SO4 C 2401
4
BC5
SOFTWARE
ARG C:158 , ARG D:284 , LYS D:286 , GLU D:333
BINDING SITE FOR RESIDUE SO4 D 3402
[
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_OVAL_CHICK_001 (L282F, chain C, )
2: VAR_OVAL_CHICK_002 (N311D, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_OVAL_CHICK_001
*
L
283
F
OVAL_CHICK
---
---
C
L
282
F
2
UniProt
VAR_OVAL_CHICK_002
*
N
312
D
OVAL_CHICK
---
---
C
N
311
D
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SERPIN (C:358-368)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SERPIN
PS00284
Serpins signature.
OVAL_CHICK
359-369
1
-
-
C:358-368
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1uhga_ (A:)
1b: SCOP_d1uhgb_ (B:)
1c: SCOP_d1uhgc_ (C:)
1d: SCOP_d1uhgd_ (D:)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Serpins
(120)
Superfamily
:
Serpins
(120)
Family
:
Serpins
(100)
Protein domain
:
Ovalbumin
(3)
Chicken (Gallus gallus) [TaxId: 9031]
(3)
1a
d1uhga_
A:
1b
d1uhgb_
B:
1c
d1uhgc_
C:
1d
d1uhgd_
D:
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1uhgA02 (A:1-185,A:285-334)
1b: CATH_1uhgD02 (D:1-185,D:285-334)
1c: CATH_1uhgB02 (B:1-185,B:285-334)
1d: CATH_1uhgC02 (C:1-185,C:285-334)
2a: CATH_1uhgC01 (C:186-284,C:335-380)
2b: CATH_1uhgA01 (A:186-284,A:335-379)
2c: CATH_1uhgB01 (B:186-284,B:335-380)
2d: CATH_1uhgD01 (D:186-284,D:335-380)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Antithrombin; Chain I, domain 2
(100)
Homologous Superfamily
:
Antithrombin, subunit I, domain 2
(100)
Chicken (Gallus gallus)
(7)
1a
1uhgA02
A:1-185,A:285-334
1b
1uhgD02
D:1-185,D:285-334
1c
1uhgB02
B:1-185,B:285-334
1d
1uhgC02
C:1-185,C:285-334
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Alpha-1-antitrypsin; domain 1
(101)
Homologous Superfamily
:
Alpha-1-antitrypsin, domain 1
(101)
Chicken (Gallus gallus)
(7)
2a
1uhgC01
C:186-284,C:335-380
2b
1uhgA01
A:186-284,A:335-379
2c
1uhgB01
B:186-284,B:335-380
2d
1uhgD01
D:186-284,D:335-380
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Serpin_1uhgD01 (D:5-384)
1b: PFAM_Serpin_1uhgD02 (D:5-384)
1c: PFAM_Serpin_1uhgD03 (D:5-384)
1d: PFAM_Serpin_1uhgD04 (D:5-384)
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Clans
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Families
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)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Serpin]
(63)
Family
:
Serpin
(63)
Gallus gallus (Chicken)
(3)
1a
Serpin-1uhgD01
D:5-384
1b
Serpin-1uhgD02
D:5-384
1c
Serpin-1uhgD03
D:5-384
1d
Serpin-1uhgD04
D:5-384
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Chain C
Asymmetric Unit 1
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Asym.Unit (267 KB)
Header - Asym.Unit
Biol.Unit 1 (69 KB)
Header - Biol.Unit 1
Biol.Unit 2 (69 KB)
Header - Biol.Unit 2
Biol.Unit 3 (68 KB)
Header - Biol.Unit 3
Biol.Unit 4 (69 KB)
Header - Biol.Unit 4
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