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(-) Description

Title :  CRYSTAL STRUCTURE OF UNCLEAVED OVALBUMIN AT 1.95 ANGSTROMS RESOLUTION
 
Authors :  P. E. Stein, A. G. W. Leslie
Date :  26 Nov 90  (Deposition) - 15 Apr 92  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Serpin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. E. Stein, A. G. Leslie, J. T. Finch, R. W. Carrell
Crystal Structure Of Uncleaved Ovalbumin At 1. 95 A Resolution.
J. Mol. Biol. V. 221 941 1991
PubMed-ID: 1942038  |  Reference-DOI: 10.1016/0022-2836(91)80185-W
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - OVALBUMIN
    Chains: A
    Engineered: YES
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031
 
Molecule 2 - OVALBUMIN
    Chains: B
    Engineered: YES
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031
 
Molecule 3 - OVALBUMIN
    Chains: C, D
    Engineered: YES
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric Unit (4, 12)
No.NameCountTypeFull Name
1ACE4Mod. Amino AcidACETYL GROUP
2CA1Ligand/IonCALCIUM ION
3NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
4SEP3Mod. Amino AcidPHOSPHOSERINE
Biological Unit 1 (3, 7)
No.NameCountTypeFull Name
1ACE2Mod. Amino AcidACETYL GROUP
2CA-1Ligand/IonCALCIUM ION
3NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
4SEP3Mod. Amino AcidPHOSPHOSERINE
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1ACE2Mod. Amino AcidACETYL GROUP
2CA-1Ligand/IonCALCIUM ION
3NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
4SEP-1Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:298 , THR A:300 , SER A:301 , MET A:304 , GLN A:331BINDING SITE FOR RESIDUE NAG A 393
2AC2SOFTWAREGLU A:201 , SEP A:350 , HOH A:665 , GLU D:281BBINDING SITE FOR RESIDUE CA A 500
3AC3SOFTWAREGLN B:174 , ASN B:298 , GLN B:331BINDING SITE FOR RESIDUE NAG B 393
4AC4SOFTWAREGLN C:174 , ASN C:298 , SER C:301 , MET C:304 , GLN C:331BINDING SITE FOR RESIDUE NAG C 393
5AC5SOFTWAREGLN D:174 , ASN D:298 , THR D:300 , SER D:301 , GLN D:331BINDING SITE FOR RESIDUE NAG D 393

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1A:87H-A:133
2C:87H-C:133
3D:87H-D:133

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1OVA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 8)

Asymmetric Unit (2, 8)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_OVAL_CHICK_001 *L283FOVAL_CHICK  ---  ---A/B/C/DL288F
2UniProtVAR_OVAL_CHICK_002 *N312DOVAL_CHICK  ---  ---A/B/C/DN317D
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_OVAL_CHICK_001 *L283FOVAL_CHICK  ---  ---A/BL288F
2UniProtVAR_OVAL_CHICK_002 *N312DOVAL_CHICK  ---  ---A/BN317D
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_OVAL_CHICK_001 *L283FOVAL_CHICK  ---  ---C/DL288F
2UniProtVAR_OVAL_CHICK_002 *N312DOVAL_CHICK  ---  ---C/DN317D
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SERPINPS00284 Serpins signature.OVAL_CHICK359-369
 
 
 		  4A:364-374
B:364-374
C:364-374
D:364-374
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SERPINPS00284 Serpins signature.OVAL_CHICK359-369
 
 
 		  2A:364-374
B:364-374
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SERPINPS00284 Serpins signature.OVAL_CHICK359-369
 
 
 		  2-
-
C:364-374
D:364-374

(-) Exons   (7, 28)

Asymmetric Unit (7, 28)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSGALT000000371951ENSGALE00000242697chr2:68913487-6891344147OVAL_CHICK-00--
1.2aENSGALT000000371952aENSGALE00000242696chr2:68911851-68911667185OVAL_CHICK1-56564A:23-78
B:23-78
C:23-78
D:23-78		56
56
56
56
1.3ENSGALT000000371953ENSGALE00000138911chr2:68911415-6891136551OVAL_CHICK57-73174A:79-87G
B:79-87
C:79-87G
D:79-87G		17
10
17
17
1.4ENSGALT000000371954ENSGALE00000138907chr2:68910783-68910655129OVAL_CHICK74-116434A:87H-128
B:92-128
C:87H-128
D:87H-128		43
37
43
43
1.5ENSGALT000000371955ENSGALE00000138912chr2:68910253-68910136118OVAL_CHICK117-156404A:129-167
B:129-167
C:129-167
D:129-167		40
40
40
40
1.6ENSGALT000000371956ENSGALE00000138908chr2:68909176-68909034143OVAL_CHICK156-203484A:167-212
B:167-212
C:167-212
D:167-212		48
48
48
48
1.7ENSGALT000000371957ENSGALE00000138909chr2:68908697-68908542156OVAL_CHICK204-255524A:213-262
B:213-262
C:213-262
D:213-262		52
52
52
52
1.8bENSGALT000000371958bENSGALE00000242681chr2:68906957-689059151043OVAL_CHICK256-3861314A:263-391 (gaps)
B:263-391 (gaps)
C:263-391 (gaps)
D:263-391 (gaps)		132
132
132
132

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:386
 aligned with OVAL_CHICK | P01012 from UniProtKB/Swiss-Prot  Length:386

    Alignment length:386
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380      
          OVAL_CHICK      1 MGSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGREVVGSAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP  386
               SCOP domains d1ovaa_ A: Ovalbumin                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -1ovaA02 A:24-195,A:291-340 Antithrombin, subunit I, domain 2                                                                                                                             1ovaA01 A:196-290,A:341-391 Alpha-1-antitrypsin, domain 1                                          1ovaA02 A:24-195,A:291-340                        1ovaA01 A:196-290,A:341-391                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhhhh....hhhhhhhhhhh.........hhhh..........hhhhhhhhhhh.....eeeeeeeeeeee......hhhhhhhhhh....eeee.....hhhhhhhhhhhhhhh...................eeeeeeeeeeeeeee...hhh.eeeeeeee..eeeeeeeeeeeeeeeeeee....eeeeeee.....eeeeeeee.....hhhhhhh..hhhhhhh......eeeeeeeeee.eeeeeeeehhhhhhhh...hhh..................eeeeeeeeee.....................eeee....eeeeeee.....eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F----------------------------D-------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SERPIN     ----------------- PROSITE
           Transcript 1 (1) Exon 1.2a  PDB: A:23-78 UniProt: 1-56                   Exon 1.3         Exon 1.4  PDB: A:87H-128 UniProt: 74-116   Exon 1.5  PDB: A:129-167                -----------------------------------------------Exon 1.7  PDB: A:213-262 UniProt: 204-255           Exon 1.8b  PDB: A:263-391 (gaps) UniProt: 256-386                                                                                   Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: A:167-212 UniProt: 156-203       --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                1ova A   23 xGSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDsIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGREVVGsAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP  391
                            |       32        42        52        62        72        82 |    |87D|||||   92       102      |112       122       132       142       151       161       171      179B       189       199       209       219       229       239      |248       257       267       277    || 285       295       305       315       325       335       345    |  355     ||365       375       385      
                            |                                                          83A  87A||||||||                  109A                                     149A                           179A|                                                               245A        256A                      281A|                                                                  350-SEP    361||                            
                           23-ACE                                                            87B|||||||                                                                                           179B                                                                                                      281B                                                                              363|                            
                                                                                              87C-SEP||                                                                                                                                                                                                                                                                                       363A                            
                                                                                               87D|||||                                                                                                                                                                                                                                                                                                                       
                                                                                                87E||||                                                                                                                                                                                                                                                                                                                       
                                                                                                 87F|||                                                                                                                                                                                                                                                                                                                       
                                                                                                  87G||                                                                                                                                                                                                                                                                                                                       
                                                                                                   87H|                                                                                                                                                                                                                                                                                                                       
                                                                                                    87I                                                                                                                                                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:373
 aligned with OVAL_CHICK | P01012 from UniProtKB/Swiss-Prot  Length:386

    Alignment length:386
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380      
          OVAL_CHICK      1 MGSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGREVVGSAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP  386
               SCOP domains d1ovab_ B: Ovalbumin                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -1ovaB02 B:24-195,B:291-340 Antithrombin, subunit I, domain 2                                                                                                                             1ovaB01 B:196-290,B:341-387 Alpha-1-antitrypsin, domain 1                                          1ovaB02 B:24-195,B:291-340                        1ovaB01 B:196-290,B:341-387                    ---- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhhhh....hhhhhhhhhhh........-------------..hhhhhhhhhhh.....eeeeeeeeeeee......hhhhhhhhhh....eeee.....hhhhhhhhhhhhhhh...................eeeeeeeeeeeeeee...hhh.eeeeee.....eeeeeeeeeeeeeeeeee....eeeeeee.....eeeeeeee.....hhhhhhh..hhhhhhh......eeeeeeeeee.eeeeeeeehhhhhhhh...hhh................eeeeeeeeeeee.....................eeee....eeeeeee.....eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F----------------------------D-------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SERPIN     ----------------- PROSITE
           Transcript 1 (1) Exon 1.2a  PDB: B:23-78 UniProt: 1-56                   Exon 1.3         Exon 1.4  PDB: B:92-128 UniProt: 74-116    Exon 1.5  PDB: B:129-167                -----------------------------------------------Exon 1.7  PDB: B:213-262 UniProt: 204-255           Exon 1.8b  PDB: B:263-391 (gaps) UniProt: 256-386                                                                                   Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: B:167-212 UniProt: 156-203       --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                1ova B   23 xGSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGF-------------VHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGREVVGsAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP  391
                            |       32        42        52        62        72        82 |   |   -        92       102      |112       122       132       142       151       161       171      179B       189       199       209       219       229       239      |248       257       267       277    || 285       295       305       315       325       335       345    |  355     ||365       375       385      
                           23-ACE                                                      83A  87            92             109A                                     149A                           179A|                                                               245A        256A                      281A|                                                                  350-SEP    361||                            
                                                                                                                                                                                                  179B                                                                                                      281B                                                                              363|                            
                                                                                                                                                                                                                                                                                                                                                                                              363A                            


Chain C from PDB  Type:PROTEIN  Length:374
 aligned with OVAL_CHICK | P01012 from UniProtKB/Swiss-Prot  Length:386

    Alignment length:386
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380      
          OVAL_CHICK      1 MGSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGREVVGSAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP  386
               SCOP domains d1ovac_ C: Ovalbumin                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -1ovaC02 C:24-195,C:291-340 Antithrombin, subunit I, domain 2                                                                                                                             1ovaC01 C:196-290,C:341-385 Alpha-1-antitrypsin, domain 1                                          1ovaC02 C:24-195,C:291-340                        1ovaC01             C:196-290,C:341-385      ------ CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhh...hhhhhhhhhhh.........hhhh..........hhhhhhhhhhh.....eeeeeeeeeeee......hhhhhhhhhh....eeee.....hhhhhhhhhhhhhhh...................eeeeeeeeeeeeeee...hhh.eeeeee.....eeeeeeeeeeeeeeeeee....eeeeeee.....eeeeeeee.....hhhhhhh..hhhhhhh......eeeeeeeeee.eeeeeeeehhhhhhh....hhh..................eeeeeeeeee.......------------..eeee....eeeeeee.....eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F----------------------------D-------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SERPIN     ----------------- PROSITE
           Transcript 1 (1) Exon 1.2a  PDB: C:23-78 UniProt: 1-56                   Exon 1.3         Exon 1.4  PDB: C:87H-128 UniProt: 74-116   Exon 1.5  PDB: C:129-167                -----------------------------------------------Exon 1.7  PDB: C:213-262 UniProt: 204-255           Exon 1.8b  PDB: C:263-391 (gaps) UniProt: 256-386                                                                                   Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: C:167-212 UniProt: 156-203       --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                1ova C   23 xGSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGREV------------VSEEFRADHPFLFCIKHIATNAVLFFGRCVSP  391
                            |       32        42        52        62        72        82 |    |87D|||||   92       102      |112       122       132       142       151       161       171      179B       189       199       209       219       229       239      |248       257       267       277    || 285       295       305       315       325       335       345 |       -    |||365       375       385      
                           23-ACE                                                      83A  87A||||||||                  109A                                     149A                           179A|                                                               245A        256A                      281A|                                                               347          360|||                            
                                                                                             87B|||||||                                                                                           179B                                                                                                      281B                                                                             361||                            
                                                                                              87C||||||                                                                                                                                                                                                                                                                                       363|                            
                                                                                               87D|||||                                                                                                                                                                                                                                                                                       363A                            
                                                                                                87E||||                                                                                                                                                                                                                                                                                                                       
                                                                                                 87F|||                                                                                                                                                                                                                                                                                                                       
                                                                                                  87G||                                                                                                                                                                                                                                                                                                                       
                                                                                                   87H|                                                                                                                                                                                                                                                                                                                       
                                                                                                    87I                                                                                                                                                                                                                                                                                                                       


Chain D from PDB  Type:PROTEIN  Length:386
 aligned with OVAL_CHICK | P01012 from UniProtKB/Swiss-Prot  Length:386

    Alignment length:386
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380      
          OVAL_CHICK      1 MGSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGREVVGSAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP  386
               SCOP domains d1ovad_ D: Ovalbumin                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -1ovaD02 D:24-195,D:291-340 Antithrombin, subunit I, domain 2                                                                                                                             1ovaD01 D:196-290,D:341-388 Alpha-1-antitrypsin, domain 1                                          1ovaD02 D:24-195,D:291-340                        1ovaD01 D:196-290,D:341-388                     --- CATH domains
           Pfam domains (1) -----Serpin-1ovaD01 D:28-391                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (1)
           Pfam domains (2) -----Serpin-1ovaD02 D:28-391                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (2)
           Pfam domains (3) -----Serpin-1ovaD03 D:28-391                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (3)
           Pfam domains (4) -----Serpin-1ovaD04 D:28-391                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (4)
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhh...hhhhhhhhhhh.........hhhh..........hhhhhhhhhhh.....eeeeeeeeeeee......hhhhhhhhhh....eeee.....hhhhhhhhhhhhhhh...................eeeeeeeeeeeeeee...hhh.eeeeee......eeeeeeeeeeeeeeeee....eeeeeee.....eeeeeeee.....hhhhhhh..hhhhhhh......eeeeeeeeee.eeeeeeeehhhhhhh....hhh..................eeeeeeeeee.........hhhhhhhhhh..eeee....eeeeeee.....eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F----------------------------D-------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SERPIN     ----------------- PROSITE
           Transcript 1 (1) Exon 1.2a  PDB: D:23-78 UniProt: 1-56                   Exon 1.3         Exon 1.4  PDB: D:87H-128 UniProt: 74-116   Exon 1.5  PDB: D:129-167                -----------------------------------------------Exon 1.7  PDB: D:213-262 UniProt: 204-255           Exon 1.8b  PDB: D:263-391 (gaps) UniProt: 256-386                                                                                   Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: D:167-212 UniProt: 156-203       --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                1ova D   23 xGSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGREVVGSAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP  391
                            |       32        42        52        62        72        82 |    |87D|||||   92       102      |112       122       132       142       151       161       171      179B       189       199       209       219       229       239      |248       257       267       277    || 285       295       305       315       325       335       345       355     ||365       375       385      
                           23-ACE                                                      83A  87A||||||||                  109A                                     149A                           179A|                                                               245A        256A                      281A|                                                                             361||                            
                                                                                             87B|||||||                                                                                           179B                                                                                                      281B                                                                              363|                            
                                                                                              87C||||||                                                                                                                                                                                                                                                                                       363A                            
                                                                                               87D|||||                                                                                                                                                                                                                                                                                                                       
                                                                                                87E||||                                                                                                                                                                                                                                                                                                                       
                                                                                                 87F|||                                                                                                                                                                                                                                                                                                                       
                                                                                                  87G||                                                                                                                                                                                                                                                                                                                       
                                                                                                   87H|                                                                                                                                                                                                                                                                                                                       
                                                                                                    87I
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 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 2-Layer Sandwich (8480)
(-)
Topology: Antithrombin; Chain I, domain 2 (100)
(-)
Homologous Superfamily: Antithrombin, subunit I, domain 2 (100)
(-)
Chicken (Gallus gallus) (7)
1a1ovaB02B:24-195,B:291-340
1b1ovaA02A:24-195,A:291-340
1c1ovaC02C:24-195,C:291-340
1d1ovaD02D:24-195,D:291-340
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Roll (1513)
(-)
Topology: Alpha-1-antitrypsin; domain 1 (101)
(-)
Homologous Superfamily: Alpha-1-antitrypsin, domain 1 (101)
(-)
Chicken (Gallus gallus) (7)
2a1ovaC01C:196-290,C:341-385
2b1ovaD01D:196-290,D:341-388
2c1ovaB01B:196-290,B:341-387
2d1ovaA01A:196-290,A:341-391

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: no clan defined [family: Serpin] (63)

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (OVAL_CHICK | P01012)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004867    serine-type endopeptidase inhibitor activity    Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme.
biological process
    GO:0002479    antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent    The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a TAP (transporter associated with antigen processing) pathway. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell and is dependent on TAP transport from the cytosol to ER for association with the MHC class I molecule. Class I here refers to classical class I molecules.
    GO:0002480    antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent    The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a pathway not requiring TAP (transporter associated with antigen processing). The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell. Class I here refers to classical class I molecules.
    GO:0010951    negative regulation of endopeptidase activity    Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0031905    early endosome lumen    The volume enclosed by the membrane of an early endosome.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0045335    phagocytic vesicle    A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis.
    GO:0032010    phagolysosome    A membrane-bounded intracellular vesicle formed by maturation of an early phagosome following the ingestion of particulate material by phagocytosis; during maturation, phagosomes acquire markers of late endosomes and lysosomes.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OVAL_CHICK | P01012: 1jti 1p1z 1p4l 1uhg 1vac 3c8k 3cvh 3p9l 3p9m 3pab 4hkj

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1OVA)