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(-) Description

Title :  SOLUTION STRUCTURE OF MOUSE HYPOTHETICAL GENE (2610100B20RIK) PRODUCT HOMOLOGOUS TO MYB DNA-BINDING DOMAIN
 
Authors :  C. Zhao, T. Kigawa, N. Tochio, S. Koshiba, M. Inoue, M. Shirouzu, T. Terada, T. Yabuki, M. Aoki, E. Seki, T. Matsuda, A. Tanaka, T. Osanai T. Arakawa, P. Carninci, J. Kawai, Y. Hayashizaki, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  11 Jun 03  (Deposition) - 22 Jun 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Hypothetical Protein, Myb-Like Dna Binding Domain, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Zhao, T. Kigawa, N. Tochio, S. Koshiba, M. Inoue, M. Shirouzu, T. Terada, T. Yabuki, M. Aoki, E. Seki, T. Matsuda, A. Tanaka, T. Osanai, T. Arakawa, P. Carninci, J. Kawai, Y. Hayashizaki, S. Yokoyama
Solution Structure Of Mouse Hypothetical Gene (2610100B20Rik) Product Homologous To Myb Dna-Binding Domain
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 2610100B20RIK GENE PRODUCT
    Chains: A
    Engineered: YES
    Expression System Plasmid: P020918-08
    Expression System Vector Type: PLASMID
    Fragment: MYB-LIKE DNA BINDING DOMAIN
    Gene: RIKEN CDNA 2610100B20
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: CELL-FREE PROTEIN SYNTHESIS

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1UG2)

(-) Sites  (0, 0)

(no "Site" information available for 1UG2)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1UG2)

(-) Cis Peptide Bonds  (1, 20)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Leu A:11 -Pro A:12

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1UG2)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MYB_LIKEPS50090 Myb-like domain profile.GON4L_MOUSE2175-2220  1A:36-81

(-) Exons   (0, 0)

(no "Exon" information available for 1UG2)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:95
 aligned with GON4L_MOUSE | Q9DB00 from UniProtKB/Swiss-Prot  Length:2260

    Alignment length:152
                                  2099      2109      2119      2129      2139      2149      2159      2169      2179      2189      2199      2209      2219      2229      2239  
         GON4L_MOUSE   2090 GKAGSQSWLIESRAEAEAAHVAAPICEKSSGARASEAAPKTAREVLAEDSGTQGMGPEGALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTACEASSEDEDDATSTS 2241
               SCOP domains d1ug2                        a_                           A: 2610100b20rik gene product                                                                  SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....------------------------...--------------------------.............................hhhhhhhhhhhhh.......hhhhhhhh....hhhhhhhhhhhhhhhhh......-------... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------MYB_LIKE  PDB: A:36-81 UniProt: 2175-2220     --------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ug2 A    1 GPSGS------------------------SGA--------------------------GALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTACESGP-------SSG   95
                                |    -         -         6 |       -         -        10        20        30        40        50        60        70        80        90 |      93  
                                5                        6 8                          9                                                                                 92      93
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1UG2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1UG2)

(-) Gene Ontology  (8, 8)

NMR Structure(hide GO term definitions)
Chain A   (GON4L_MOUSE | Q9DB00)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0003714    transcription corepressor activity    Interacting selectively and non-covalently with a repressing transcription factor and also with the basal transcription machinery in order to stop, prevent, or reduce the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between repressive transcription factors and the basal transcription machinery.
biological process
    GO:0030183    B cell differentiation    The process in which a precursor cell type acquires the specialized features of a B cell. A B cell is a lymphocyte of B lineage with the phenotype CD19-positive and capable of B cell mediated immunity.
    GO:0045892    negative regulation of transcription, DNA-templated    Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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    Leu A:11 - Pro A:12   [ RasMol ]  
 

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