1TQJ - JenaLib

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:217
 aligned with RPE_SYNY3 | P74061 from UniProtKB/Swiss-Prot  Length:230

    Alignment length:221
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222 
            RPE_SYNY3     3 KNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRP 223
               SCOP domains d1tqja_ A: D-ribulose-5-phosphate 3-epimerase                                                                                                                                                                                 SCOP domains
               CATH domains 1tqjA00 A:3-223 Aldolase class I                                                                                                                                                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhh..eeeeee....hhhhhh.hhhhh.eeeee....----...hhhhhhhhhhhhhhhhhhh...eeeee.......hhhhhhhh..eeeehhhhhh..hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------RIBUL_P_3_EPIME-----------------------------------------------------------------------------------------RIBUL_P_3_EPIMER_2     --------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tqj A   3 KNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNP----QSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRP 223
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142  |    152       162       172       182       192       202       212       222 
                                                                                                                                                                        145  150

Chain B from PDB  Type:PROTEIN  Length:214
 aligned with RPE_SYNY3 | P74061 from UniProtKB/Swiss-Prot  Length:230

    Alignment length:222
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222  
            RPE_SYNY3     3 KNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRPE 224
               SCOP domains d1tqjb_ B: D-ribulose-5-phosphate 3-epimerase                                                                                                                                                                                  SCOP domains
               CATH domains 1tqjB00 B:3-224 Aldolase class I                                                                                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhh..eeeee.....--hhhhhhhhhhhh..eeeeee....hhhhhh.hhhhh.eeeee...------..hhhhhhhhhhhhhhhhhhh...eeeee.......hhhhhhhh..eeeehhhhhh..hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------RIBUL_P_3_EPIME-----------------------------------------------------------------------------------------RIBUL_P_3_EPIMER_2     ---------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1tqj B   3 KNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNA--HLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVN------SFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRPE 224
                                    12        22        32        42        52        62        72        82        92    |  102       112       122       132       142 |     152       162       172       182       192       202       212       222  
                                                                                                                         97  |                                         144    151                                                                         
                                                                                                                           100

Chain C from PDB  Type:PROTEIN  Length:218
 aligned with RPE_SYNY3 | P74061 from UniProtKB/Swiss-Prot  Length:230

    Alignment length:223
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222   
            RPE_SYNY3     3 KNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRPEP 225
               SCOP domains d1tqjc_ C: D-ribulose-5-phosphate 3-epimerase                                                                                                                                                                                   SCOP domains
               CATH domains 1tqjC00 C:3-225 Aldolase class I                                                                                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhh..eeeeee....hhhhhh.hhhhh.eeeee...-----.....hhhhhhhhhhhhhhhhh...eeeee.......hhhhhhhh..eeeehhhhhh..hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------RIBUL_P_3_EPIME-----------------------------------------------------------------------------------------RIBUL_P_3_EPIMER_2     ----------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tqj C   3 KNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVN-----QSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRPEP 225
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142 |     152       162       172       182       192       202       212       222   
                                                                                                                                                                       144   150

Chain D from PDB  Type:PROTEIN  Length:216
 aligned with RPE_SYNY3 | P74061 from UniProtKB/Swiss-Prot  Length:230

    Alignment length:221
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222 
            RPE_SYNY3     3 KNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRP 223
               SCOP domains d1tqjd_ D: D-ribulose-5-phosphate 3-epimerase                                                                                                                                                                                 SCOP domains
               CATH domains 1tqjD00 D:3-223 Aldolase class I                                                                                                                                                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhh..eeeeee....hhhhhh.hhhhh.eeeee...-----.....hhhhhhhhhhhhhhhh....eeeee.......hhhhhhhh..eeeehhhhhh..hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------RIBUL_P_3_EPIME-----------------------------------------------------------------------------------------RIBUL_P_3_EPIMER_2     --------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tqj D   3 KNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVN-----QSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRP 223
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142 |     152       162       172       182       192       202       212       222 
                                                                                                                                                                       144   150

Chain E from PDB  Type:PROTEIN  Length:215
 aligned with RPE_SYNY3 | P74061 from UniProtKB/Swiss-Prot  Length:230

    Alignment length:221
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222 
            RPE_SYNY3     3 KNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRP 223
               SCOP domains d1tqje_ E: D-ribulose-5-phosphate 3-epimerase                                                                                                                                                                                 SCOP domains
               CATH domains 1tqjE00 E:3-223 Aldolase class I                                                                                                                                                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhh..eeeeee....hhhhhh.hhhhh.eeeee...------....hhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------RIBUL_P_3_EPIME-----------------------------------------------------------------------------------------RIBUL_P_3_EPIMER_2     --------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tqj E   3 KNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVN------SFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRP 223
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142 |     152       162       172       182       192       202       212       222 
                                                                                                                                                                       144    151

Chain F from PDB  Type:PROTEIN  Length:217
 aligned with RPE_SYNY3 | P74061 from UniProtKB/Swiss-Prot  Length:230

    Alignment length:221
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222 
            RPE_SYNY3     3 KNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRP 223
               SCOP domains d1tqjf_ F: D-ribulose-5-phosphate 3-epimerase                                                                                                                                                                                 SCOP domains
               CATH domains 1tqjF00 F:3-223 Aldolase class I                                                                                                                                                                                              CATH domains
           Pfam domains (1) ---Ribul_P_3_epim-1tqjF01 F:6-208                                                                                                                                                                             --------------- Pfam domains (1)
           Pfam domains (2) ---Ribul_P_3_epim-1tqjF02 F:6-208                                                                                                                                                                             --------------- Pfam domains (2)
           Pfam domains (3) ---Ribul_P_3_epim-1tqjF03 F:6-208                                                                                                                                                                             --------------- Pfam domains (3)
           Pfam domains (4) ---Ribul_P_3_epim-1tqjF04 F:6-208                                                                                                                                                                             --------------- Pfam domains (4)
           Pfam domains (5) ---Ribul_P_3_epim-1tqjF05 F:6-208                                                                                                                                                                             --------------- Pfam domains (5)
           Pfam domains (6) ---Ribul_P_3_epim-1tqjF06 F:6-208                                                                                                                                                                             --------------- Pfam domains (6)
         Sec.struct. author ...eeee.hhhhhhhhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhh..eeeeee....hhhhhh.hhhhh.eeeee....----...hhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------RIBUL_P_3_EPIME-----------------------------------------------------------------------------------------RIBUL_P_3_EPIMER_2     --------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tqj F   3 KNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNP----QSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRP 223
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142  |    152       162       172       182       192       202       212       222 
                                                                                                                                                                        145  150

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D,E,F (RPE_SYNY3 | P74061)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	Catalysis of a reaction that alters the configuration of one or more chiral centers in a carbohydrate molecule.
	GO:0004750	ribulose-phosphate 3-epimerase activity	Catalysis of the reaction: D-ribulose 5-phosphate = D-xylulose 5-phosphate.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0044262	cellular carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0019323	pentose catabolic process	The chemical reactions and pathways resulting in the breakdown of a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.
	GO:0006098	pentose-phosphate shunt	The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses.
	GO:0009052	pentose-phosphate shunt, non-oxidative branch	The branch of the pentose-phosphate shunt which does not involve oxidation reactions. It comprises a series of sugar phosphate interconversions, starting with ribulose 5-P and producing fructose 6-P and glyceraldehyde 3-P.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 12)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 6)

CATH Domains (1, 6)

Pfam Domains (1, 6)

Gene Ontology (12, 12)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File