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1TQJ
Asym. Unit
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Asym.Unit (232 KB)
Biol.Unit 1 (226 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF D-RIBULOSE 5-PHOSPHATE 3-EPIMERASE FROM SYNECHOCYSTIS TO 1.6 ANGSTROM RESOLUTION
Authors
:
E. L. Wise, J. Akana, J. A. Gerlt, I. Rayment
Date
:
17 Jun 04 (Deposition) - 31 Aug 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Beta-Alpha Barrel Epimerase, Isomerase
(Keyword Search:
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Reference
:
E. L. Wise, J. Akana, J. A. Gerlt, I. Rayment
Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Synechocystis To 1. 6 A Resolution.
Acta Crystallogr. , Sect. D V. 60 1687 2004
(for further references see the
PDB file header
)
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Hetero Components
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Sites
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PROSITE Patterns/Profiles
(2, 12)
Info
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1: RIBUL_P_3_EPIMER_1 (A:34-48,B:34-48,C:34-48,D:34-48,E:...)
2: RIBUL_P_3_EPIMER_2 (A:138-160,B:138-160,C:138-160,D:13...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBUL_P_3_EPIMER_1
PS01085
Ribulose-phosphate 3-epimerase family signature 1.
RPE_SYNY3
34-48
6
A:34-48
B:34-48
C:34-48
D:34-48
E:34-48
F:34-48
2
RIBUL_P_3_EPIMER_2
PS01086
Ribulose-phosphate 3-epimerase family signature 2.
RPE_SYNY3
138-160
6
A:138-160
B:138-160
C:138-160
D:138-160
E:138-160
F:138-160
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1tqja_ (A:)
1b: SCOP_d1tqjb_ (B:)
1c: SCOP_d1tqjc_ (C:)
1d: SCOP_d1tqjd_ (D:)
1e: SCOP_d1tqje_ (E:)
1f: SCOP_d1tqjf_ (F:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Ribulose-phoshate binding barrel
(356)
Family
:
D-ribulose-5-phosphate 3-epimerase
(6)
Protein domain
:
D-ribulose-5-phosphate 3-epimerase
(6)
Synechocystis sp. PCC 6803 [TaxId: 1148]
(1)
1a
d1tqja_
A:
1b
d1tqjb_
B:
1c
d1tqjc_
C:
1d
d1tqjd_
D:
1e
d1tqje_
E:
1f
d1tqjf_
F:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1tqjC00 (C:3-225)
1b: CATH_1tqjA00 (A:3-223)
1c: CATH_1tqjF00 (F:3-223)
1d: CATH_1tqjD00 (D:3-223)
1e: CATH_1tqjE00 (E:3-223)
1f: CATH_1tqjB00 (B:3-224)
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Synechocystis sp.. Organism_taxid: 1143.
(1)
1a
1tqjC00
C:3-225
1b
1tqjA00
A:3-223
1c
1tqjF00
F:3-223
1d
1tqjD00
D:3-223
1e
1tqjE00
E:3-223
1f
1tqjB00
B:3-224
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Ribul_P_3_epim_1tqjF01 (F:6-208)
1b: PFAM_Ribul_P_3_epim_1tqjF02 (F:6-208)
1c: PFAM_Ribul_P_3_epim_1tqjF03 (F:6-208)
1d: PFAM_Ribul_P_3_epim_1tqjF04 (F:6-208)
1e: PFAM_Ribul_P_3_epim_1tqjF05 (F:6-208)
1f: PFAM_Ribul_P_3_epim_1tqjF06 (F:6-208)
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Clan
:
TIM_barrel
(694)
Family
:
Ribul_P_3_epim
(7)
Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1)
(1)
1a
Ribul_P_3_epim-1tqjF01
F:6-208
1b
Ribul_P_3_epim-1tqjF02
F:6-208
1c
Ribul_P_3_epim-1tqjF03
F:6-208
1d
Ribul_P_3_epim-1tqjF04
F:6-208
1e
Ribul_P_3_epim-1tqjF05
F:6-208
1f
Ribul_P_3_epim-1tqjF06
F:6-208
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