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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF D-RIBULOSE 5-PHOSPHATE 3-EPIMERASE FROM SYNECHOCYSTIS TO 1.6 ANGSTROM RESOLUTION
Keywords BETA-ALPHA BARREL EPIMERASE, ISOMERASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1TQJ     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RIBULOSE-PHOSPHATE 3-EPIMERASE  A 217 1640 0
2  Protein   RIBULOSE-PHOSPHATE 3-EPIMERASE  B 214 1632 0
3  Protein   RIBULOSE-PHOSPHATE 3-EPIMERASE  C 218 1648 0
4  Protein   RIBULOSE-PHOSPHATE 3-EPIMERASE  D 216 1643 0
5  Protein   RIBULOSE-PHOSPHATE 3-EPIMERASE  E 215 1642 0
6  Protein   RIBULOSE-PHOSPHATE 3-EPIMERASE  F 217 1643 0
7 Water     1439 0 1439
total       2736 9848 1439

Proteins
Unit 1 LYS3 ASN4 ILE5 VAL6 VAL7 ALA8 PRO9 SER10 ILE11 LEU12 SER13 ALA14 ASP15 PHE16 SER17 ARG18 LEU19 GLY20 GLU21 GLU22 ILE23 LYS24 ALA25 VAL26 ASP27 GLU28 ALA29 GLY30 ALA31 ASP32 TRP33 ILE34 HIS35 VAL36 ASP37 VAL38 MET39 ASP40 GLY41 ARG42 PHE43 VAL44 PRO45 ASN46 ILE47 THR48 ILE49 GLY50 PRO51 LEU52 ILE53 VAL54 ASP55 ALA56 ILE57 ARG58 PRO59 LEU60 THR61 LYS62 LYS63 THR64 LEU65 ASP66 VAL67 HIS68 LEU69 MET70 ILE71 VAL72 GLU73 PRO74 GLU75 LYS76 TYR77 VAL78 GLU79 ASP80 PHE81 ALA82 LYS83 ALA84 GLY85 ALA86 ASP87 ILE88 ILE89 SER90 VAL91 HIS92 VAL93 GLU94 HIS95 ASN96 ALA97 SER98 PRO99 HIS100 LEU101 HIS102 ARG103 THR104 LEU105 CYS106 GLN107 ILE108 ARG109 GLU110 LEU111 GLY112 LYS113 LYS114 ALA115 GLY116 ALA117 VAL118 LEU119 ASN120 PRO121 SER122 THR123 PRO124 LEU125 ASP126 PHE127 LEU128 GLU129 TYR130 VAL131 LEU132 PRO133 VAL134 CYS135 ASP136 LEU137 ILE138 LEU139 ILE140 MET141 SER142 VAL143 ASN144 PRO145 GLN150 SER151 PHE152 ILE153 PRO154 GLU155 VAL156 LEU157 PRO158 LYS159 ILE160 ARG161 ALA162 LEU163 ARG164 GLN165 MET166 CYS167 ASP168 GLU169 ARG170 GLY171 LEU172 ASP173 PRO174 TRP175 ILE176 GLU177 VAL178 ASP179 GLY180 GLY181 LEU182 LYS183 PRO184 ASN185 ASN186 THR187 TRP188 GLN189 VAL190 LEU191 GLU192 ALA193 GLY194 ALA195 ASN196 ALA197 ILE198 VAL199 ALA200 GLY201 SER202 ALA203 VAL204 PHE205 ASN206 ALA207 PRO208 ASN209 TYR210 ALA211 GLU212 ALA213 ILE214 ALA215 GLY216 VAL217 ARG218 ASN219 SER220 LYS221 ARG222 PRO223
Unit 2 LYS3 ASN4 ILE5 VAL6 VAL7 ALA8 PRO9 SER10 ILE11 LEU12 SER13 ALA14 ASP15 PHE16 SER17 ARG18 LEU19 GLY20 GLU21 GLU22 ILE23 LYS24 ALA25 VAL26 ASP27 GLU28 ALA29 GLY30 ALA31 ASP32 TRP33 ILE34 HIS35 VAL36 ASP37 VAL38 MET39 ASP40 GLY41 ARG42 PHE43 VAL44 PRO45 ASN46 ILE47 THR48 ILE49 GLY50 PRO51 LEU52 ILE53 VAL54 ASP55 ALA56 ILE57 ARG58 PRO59 LEU60 THR61 LYS62 LYS63 THR64 LEU65 ASP66 VAL67 HIS68 LEU69 MET70 ILE71 VAL72 GLU73 PRO74 GLU75 LYS76 TYR77 VAL78 GLU79 ASP80 PHE81 ALA82 LYS83 ALA84 GLY85 ALA86 ASP87 ILE88 ILE89 SER90 VAL91 HIS92 VAL93 GLU94 HIS95 ASN96 ALA97 HIS100 LEU101 HIS102 ARG103 THR104 LEU105 CYS106 GLN107 ILE108 ARG109 GLU110 LEU111 GLY112 LYS113 LYS114 ALA115 GLY116 ALA117 VAL118 LEU119 ASN120 PRO121 SER122 THR123 PRO124 LEU125 ASP126 PHE127 LEU128 GLU129 TYR130 VAL131 LEU132 PRO133 VAL134 CYS135 ASP136 LEU137 ILE138 LEU139 ILE140 MET141 SER142 VAL143 ASN144 SER151 PHE152 ILE153 PRO154 GLU155 VAL156 LEU157 PRO158 LYS159 ILE160 ARG161 ALA162 LEU163 ARG164 GLN165 MET166 CYS167 ASP168 GLU169 ARG170 GLY171 LEU172 ASP173 PRO174 TRP175 ILE176 GLU177 VAL178 ASP179 GLY180 GLY181 LEU182 LYS183 PRO184 ASN185 ASN186 THR187 TRP188 GLN189 VAL190 LEU191 GLU192 ALA193 GLY194 ALA195 ASN196 ALA197 ILE198 VAL199 ALA200 GLY201 SER202 ALA203 VAL204 PHE205 ASN206 ALA207 PRO208 ASN209 TYR210 ALA211 GLU212 ALA213 ILE214 ALA215 GLY216 VAL217 ARG218 ASN219 SER220 LYS221 ARG222 PRO223 GLU224
Unit 3 LYS3 ASN4 ILE5 VAL6 VAL7 ALA8 PRO9 SER10 ILE11 LEU12 SER13 ALA14 ASP15 PHE16 SER17 ARG18 LEU19 GLY20 GLU21 GLU22 ILE23 LYS24 ALA25 VAL26 ASP27 GLU28 ALA29 GLY30 ALA31 ASP32 TRP33 ILE34 HIS35 VAL36 ASP37 VAL38 MET39 ASP40 GLY41 ARG42 PHE43 VAL44 PRO45 ASN46 ILE47 THR48 ILE49 GLY50 PRO51 LEU52 ILE53 VAL54 ASP55 ALA56 ILE57 ARG58 PRO59 LEU60 THR61 LYS62 LYS63 THR64 LEU65 ASP66 VAL67 HIS68 LEU69 MET70 ILE71 VAL72 GLU73 PRO74 GLU75 LYS76 TYR77 VAL78 GLU79 ASP80 PHE81 ALA82 LYS83 ALA84 GLY85 ALA86 ASP87 ILE88 ILE89 SER90 VAL91 HIS92 VAL93 GLU94 HIS95 ASN96 ALA97 SER98 PRO99 HIS100 LEU101 HIS102 ARG103 THR104 LEU105 CYS106 GLN107 ILE108 ARG109 GLU110 LEU111 GLY112 LYS113 LYS114 ALA115 GLY116 ALA117 VAL118 LEU119 ASN120 PRO121 SER122 THR123 PRO124 LEU125 ASP126 PHE127 LEU128 GLU129 TYR130 VAL131 LEU132 PRO133 VAL134 CYS135 ASP136 LEU137 ILE138 LEU139 ILE140 MET141 SER142 VAL143 ASN144 GLN150 SER151 PHE152 ILE153 PRO154 GLU155 VAL156 LEU157 PRO158 LYS159 ILE160 ARG161 ALA162 LEU163 ARG164 GLN165 MET166 CYS167 ASP168 GLU169 ARG170 GLY171 LEU172 ASP173 PRO174 TRP175 ILE176 GLU177 VAL178 ASP179 GLY180 GLY181 LEU182 LYS183 PRO184 ASN185 ASN186 THR187 TRP188 GLN189 VAL190 LEU191 GLU192 ALA193 GLY194 ALA195 ASN196 ALA197 ILE198 VAL199 ALA200 GLY201 SER202 ALA203 VAL204 PHE205 ASN206 ALA207 PRO208 ASN209 TYR210 ALA211 GLU212 ALA213 ILE214 ALA215 GLY216 VAL217 ARG218 ASN219 SER220 LYS221 ARG222 PRO223 GLU224 PRO225
Unit 4 LYS3 ASN4 ILE5 VAL6 VAL7 ALA8 PRO9 SER10 ILE11 LEU12 SER13 ALA14 ASP15 PHE16 SER17 ARG18 LEU19 GLY20 GLU21 GLU22 ILE23 LYS24 ALA25 VAL26 ASP27 GLU28 ALA29 GLY30 ALA31 ASP32 TRP33 ILE34 HIS35 VAL36 ASP37 VAL38 MET39 ASP40 GLY41 ARG42 PHE43 VAL44 PRO45 ASN46 ILE47 THR48 ILE49 GLY50 PRO51 LEU52 ILE53 VAL54 ASP55 ALA56 ILE57 ARG58 PRO59 LEU60 THR61 LYS62 LYS63 THR64 LEU65 ASP66 VAL67 HIS68 LEU69 MET70 ILE71 VAL72 GLU73 PRO74 GLU75 LYS76 TYR77 VAL78 GLU79 ASP80 PHE81 ALA82 LYS83 ALA84 GLY85 ALA86 ASP87 ILE88 ILE89 SER90 VAL91 HIS92 VAL93 GLU94 HIS95 ASN96 ALA97 SER98 PRO99 HIS100 LEU101 HIS102 ARG103 THR104 LEU105 CYS106 GLN107 ILE108 ARG109 GLU110 LEU111 GLY112 LYS113 LYS114 ALA115 GLY116 ALA117 VAL118 LEU119 ASN120 PRO121 SER122 THR123 PRO124 LEU125 ASP126 PHE127 LEU128 GLU129 TYR130 VAL131 LEU132 PRO133 VAL134 CYS135 ASP136 LEU137 ILE138 LEU139 ILE140 MET141 SER142 VAL143 ASN144 GLN150 SER151 PHE152 ILE153 PRO154 GLU155 VAL156 LEU157 PRO158 LYS159 ILE160 ARG161 ALA162 LEU163 ARG164 GLN165 MET166 CYS167 ASP168 GLU169 ARG170 GLY171 LEU172 ASP173 PRO174 TRP175 ILE176 GLU177 VAL178 ASP179 GLY180 GLY181 LEU182 LYS183 PRO184 ASN185 ASN186 THR187 TRP188 GLN189 VAL190 LEU191 GLU192 ALA193 GLY194 ALA195 ASN196 ALA197 ILE198 VAL199 ALA200 GLY201 SER202 ALA203 VAL204 PHE205 ASN206 ALA207 PRO208 ASN209 TYR210 ALA211 GLU212 ALA213 ILE214 ALA215 GLY216 VAL217 ARG218 ASN219 SER220 LYS221 ARG222 PRO223
Unit 5 LYS3 ASN4 ILE5 VAL6 VAL7 ALA8 PRO9 SER10 ILE11 LEU12 SER13 ALA14 ASP15 PHE16 SER17 ARG18 LEU19 GLY20 GLU21 GLU22 ILE23 LYS24 ALA25 VAL26 ASP27 GLU28 ALA29 GLY30 ALA31 ASP32 TRP33 ILE34 HIS35 VAL36 ASP37 VAL38 MET39 ASP40 GLY41 ARG42 PHE43 VAL44 PRO45 ASN46 ILE47 THR48 ILE49 GLY50 PRO51 LEU52 ILE53 VAL54 ASP55 ALA56 ILE57 ARG58 PRO59 LEU60 THR61 LYS62 LYS63 THR64 LEU65 ASP66 VAL67 HIS68 LEU69 MET70 ILE71 VAL72 GLU73 PRO74 GLU75 LYS76 TYR77 VAL78 GLU79 ASP80 PHE81 ALA82 LYS83 ALA84 GLY85 ALA86 ASP87 ILE88 ILE89 SER90 VAL91 HIS92 VAL93 GLU94 HIS95 ASN96 ALA97 SER98 PRO99 HIS100 LEU101 HIS102 ARG103 THR104 LEU105 CYS106 GLN107 ILE108 ARG109 GLU110 LEU111 GLY112 LYS113 LYS114 ALA115 GLY116 ALA117 VAL118 LEU119 ASN120 PRO121 SER122 THR123 PRO124 LEU125 ASP126 PHE127 LEU128 GLU129 TYR130 VAL131 LEU132 PRO133 VAL134 CYS135 ASP136 LEU137 ILE138 LEU139 ILE140 MET141 SER142 VAL143 ASN144 SER151 PHE152 ILE153 PRO154 GLU155 VAL156 LEU157 PRO158 LYS159 ILE160 ARG161 ALA162 LEU163 ARG164 GLN165 MET166 CYS167 ASP168 GLU169 ARG170 GLY171 LEU172 ASP173 PRO174 TRP175 ILE176 GLU177 VAL178 ASP179 GLY180 GLY181 LEU182 LYS183 PRO184 ASN185 ASN186 THR187 TRP188 GLN189 VAL190 LEU191 GLU192 ALA193 GLY194 ALA195 ASN196 ALA197 ILE198 VAL199 ALA200 GLY201 SER202 ALA203 VAL204 PHE205 ASN206 ALA207 PRO208 ASN209 TYR210 ALA211 GLU212 ALA213 ILE214 ALA215 GLY216 VAL217 ARG218 ASN219 SER220 LYS221 ARG222 PRO223
Unit 6 LYS3 ASN4 ILE5 VAL6 VAL7 ALA8 PRO9 SER10 ILE11 LEU12 SER13 ALA14 ASP15 PHE16 SER17 ARG18 LEU19 GLY20 GLU21 GLU22 ILE23 LYS24 ALA25 VAL26 ASP27 GLU28 ALA29 GLY30 ALA31 ASP32 TRP33 ILE34 HIS35 VAL36 ASP37 VAL38 MET39 ASP40 GLY41 ARG42 PHE43 VAL44 PRO45 ASN46 ILE47 THR48 ILE49 GLY50 PRO51 LEU52 ILE53 VAL54 ASP55 ALA56 ILE57 ARG58 PRO59 LEU60 THR61 LYS62 LYS63 THR64 LEU65 ASP66 VAL67 HIS68 LEU69 MET70 ILE71 VAL72 GLU73 PRO74 GLU75 LYS76 TYR77 VAL78 GLU79 ASP80 PHE81 ALA82 LYS83 ALA84 GLY85 ALA86 ASP87 ILE88 ILE89 SER90 VAL91 HIS92 VAL93 GLU94 HIS95 ASN96 ALA97 SER98 PRO99 HIS100 LEU101 HIS102 ARG103 THR104 LEU105 CYS106 GLN107 ILE108 ARG109 GLU110 LEU111 GLY112 LYS113 LYS114 ALA115 GLY116 ALA117 VAL118 LEU119 ASN120 PRO121 SER122 THR123 PRO124 LEU125 ASP126 PHE127 LEU128 GLU129 TYR130 VAL131 LEU132 PRO133 VAL134 CYS135 ASP136 LEU137 ILE138 LEU139 ILE140 MET141 SER142 VAL143 ASN144 PRO145 GLN150 SER151 PHE152 ILE153 PRO154 GLU155 VAL156 LEU157 PRO158 LYS159 ILE160 ARG161 ALA162 LEU163 ARG164 GLN165 MET166 CYS167 ASP168 GLU169 ARG170 GLY171 LEU172 ASP173 PRO174 TRP175 ILE176 GLU177 VAL178 ASP179 GLY180 GLY181 LEU182 LYS183 PRO184 ASN185 ASN186 THR187 TRP188 GLN189 VAL190 LEU191 GLU192 ALA193 GLY194 ALA195 ASN196 ALA197 ILE198 VAL199 ALA200 GLY201 SER202 ALA203 VAL204 PHE205 ASN206 ALA207 PRO208 ASN209 TYR210 ALA211 GLU212 ALA213 ILE214 ALA215 GLY216 VAL217 ARG218 ASN219 SER220 LYS221 ARG222 PRO223

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany