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(-) Description

Title :  THE CRYSTAL STRUCTURE OF BOVINE LIVER CATALASE WITHOUT NADPH
 
Authors :  R. Sugadev, D. Balasundaresan, M. N. Ponnuswamy, D. Kumaran, S. Swaminathan, K. Sekar
Date :  31 May 04  (Deposition) - 05 Jul 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Bovine Liver Catalase, Nadph, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Sugadev, D. Balasundaresan, M. N. Ponnuswamy, D. Kumaran, S. Swaminathan, K. Sekar
The Crystal Structure Of Bovine Liver Catalase
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CATALASE
    Chains: A, B, C, D
    EC Number: 1.11.1.6
    Organ: LIVER
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1HEM4Ligand/IonPROTOPORPHYRIN IX CONTAINING FE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:71 , VAL A:72 , VAL A:73 , HIS A:74 , ARG A:111 , VAL A:145 , GLY A:146 , ASN A:147 , PHE A:160 , SER A:216 , HIS A:217 , LEU A:298 , PHE A:333 , MET A:349 , ARG A:353 , TYR A:357 , HIS A:361 , ARG A:364 , HOH A:2003 , HOH A:2006 , HOH A:2011 , HOH A:2025 , MET D:60BINDING SITE FOR RESIDUE HEM A 2000
2AC2SOFTWAREARG B:71 , VAL B:72 , VAL B:73 , HIS B:74 , ARG B:111 , VAL B:145 , ASN B:147 , PHE B:152 , PHE B:160 , PHE B:333 , MET B:349 , ARG B:353 , ALA B:356 , TYR B:357 , THR B:360 , HIS B:361 , ARG B:364 , HOH B:2010 , HOH B:2018 , HOH B:2020 , HOH B:2023BINDING SITE FOR RESIDUE HEM B 2001
3AC3SOFTWAREMET B:60 , ARG C:71 , VAL C:72 , VAL C:73 , HIS C:74 , ARG C:111 , VAL C:145 , GLY C:146 , ASN C:147 , PHE C:160 , SER C:216 , HIS C:217 , LEU C:298 , PHE C:333 , MET C:349 , ARG C:353 , ALA C:356 , TYR C:357 , THR C:360 , HIS C:361 , ARG C:364 , HOH C:2007 , HOH C:2049BINDING SITE FOR RESIDUE HEM C 2002
4AC4SOFTWAREARG D:71 , VAL D:72 , VAL D:73 , HIS D:74 , ARG D:111 , GLY D:130 , PHE D:131 , VAL D:145 , GLY D:146 , ASN D:147 , PHE D:160 , SER D:216 , LEU D:331 , PHE D:333 , MET D:349 , ARG D:353 , TYR D:357 , THR D:360 , HIS D:361 , ARG D:364BINDING SITE FOR RESIDUE HEM D 2003

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1TGU)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Tyr A:404 -Pro A:405
2Tyr B:404 -Pro B:405
3Tyr C:404 -Pro C:405
4Tyr D:404 -Pro D:405

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1TGU)

(-) PROSITE Motifs  (3, 12)

Asymmetric/Biological Unit (3, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CATALASE_3PS51402 catalase family profile.CATA_BOVIN24-503
 
 
 		  4A:23-501
B:23-501
C:23-501
D:23-501
2CATALASE_2PS00438 Catalase proximal active site signature.CATA_BOVIN64-80
 
 
 		  4A:63-79
B:63-79
C:63-79
D:63-79
3CATALASE_1PS00437 Catalase proximal heme-ligand signature.CATA_BOVIN354-362
 
 
 		  4A:353-361
B:353-361
C:353-361
D:353-361

(-) Exons   (15, 60)

Asymmetric/Biological Unit (15, 60)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000279411ENSBTAE00000227830chr15:64689389-6468945466CATA_BOVIN1-22224A:3-21
B:3-21
C:3-21
D:3-21		19
19
19
19
1.2ENSBTAT000000279412ENSBTAE00000227831chr15:64702502-64702673172CATA_BOVIN23-80584A:22-79
B:22-79
C:22-79
D:22-79		58
58
58
58
1.3ENSBTAT000000279413ENSBTAE00000227832chr15:64704111-64704221111CATA_BOVIN80-117384A:79-116
B:79-116
C:79-116
D:79-116		38
38
38
38
1.4ENSBTAT000000279414ENSBTAE00000227833chr15:64705256-64705386131CATA_BOVIN117-160444A:116-159
B:116-159
C:116-159
D:116-159		44
44
44
44
1.5ENSBTAT000000279415ENSBTAE00000227834chr15:64705936-64706040105CATA_BOVIN161-195354A:160-194
B:160-194
C:160-194
D:160-194		35
35
35
35
1.6ENSBTAT000000279416ENSBTAE00000227835chr15:64706630-64706755126CATA_BOVIN196-237424A:195-236
B:195-236
C:195-236
D:195-236		42
42
42
42
1.7ENSBTAT000000279417ENSBTAE00000329513chr15:64710914-6471099481CATA_BOVIN238-264274A:237-263
B:237-263
C:237-263
D:237-263		27
27
27
27
1.8ENSBTAT000000279418ENSBTAE00000329511chr15:64710999-6471106466CATA_BOVIN265-286224A:264-285
B:264-285
C:264-285
D:264-285		22
22
22
22
1.9ENSBTAT000000279419ENSBTAE00000329510chr15:64711069-6471110638CATA_BOVIN287-299134A:286-298
B:286-298
C:286-298
D:286-298		13
13
13
13
1.10ENSBTAT0000002794110ENSBTAE00000425927chr15:64711490-647114901CATA_BOVIN299-29914A:298-298
B:298-298
C:298-298
D:298-298		1
1
1
1
1.11ENSBTAT0000002794111ENSBTAE00000227837chr15:64711570-64711722153CATA_BOVIN300-350514A:299-349
B:299-349
C:299-349
D:299-349		51
51
51
51
1.12ENSBTAT0000002794112ENSBTAE00000227838chr15:64715231-64715369139CATA_BOVIN351-397474A:350-396
B:350-396
C:350-396
D:350-396		47
47
47
47
1.13ENSBTAT0000002794113ENSBTAE00000227839chr15:64717926-64718056131CATA_BOVIN397-440444A:396-439
B:396-439
C:396-439
D:396-439		44
44
44
44
1.14ENSBTAT0000002794114ENSBTAE00000227840chr15:64722050-64722157108CATA_BOVIN441-476364A:440-475
B:440-475
C:440-475
D:440-475		36
36
36
36
1.15ENSBTAT0000002794115ENSBTAE00000227841chr15:64723897-6472398084CATA_BOVIN477-504284A:476-501
B:476-501
C:476-501
D:476-501		26
26
26
26
1.16ENSBTAT0000002794116ENSBTAE00000380789chr15:64724586-6472465166CATA_BOVIN505-525210--

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:499
 aligned with CATA_BOVIN | P00432 from UniProtKB/Swiss-Prot  Length:527

    Alignment length:499
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493         
           CATA_BOVIN     4 NRDPASDQMKHWKEQRAAQKPDVLTTGGGNPVGDKLNSLTVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDALLFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQGIKNLSVEDAARLAHEDPDYGLRDLFNAIATGNYPSWTLYIQVMTFSEAEIFPFNPFDLTKVWPHGDYPLIPVGKLVLNRNPVNYFAEVEQLAFDPSNMPPGIEPSPDKMLQGRLFAYPDTHRHRLGPNYLQIPVNCPYRARVANYQRDGPMCMMDNQGGAPNYYPNSFSAPEHQPSALEHRTHFSGDVQRFNSANDDNVTQVRTFYLKVLNEEQRKRLCENIAGHLKDAQLFIQKKAVKNFSDVHPEYGSRIQALLDKYNE 502
               SCOP domains d1tgua_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhh......................ee..........hhhhhhhhhhhh............eeeeeeeeee.........hhhhh....eeeeeeeee................eeeeeeee..eeeeeeee........hhhhhhhhhhhhh........hhhhhhhhhhhh..hhhhhhhhhhhhhh........ee....eeee.....eeeeeeeeee.......hhhhhhhhhhhh.hhhhhhhhhhhhh....eeeeeeeee.........................eeeeeeeeeee...hhhhhh.............eee..hhhhhhhhhhhhhhhhhhh..hhhhhhhhh.....................................hhhhh...eeeeeeee.........hhhhhhhhhh..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------CATALASE_3  PDB: A:23-501 UniProt: 24-503                                                                                                                                                                                                                                                                                                                                                                                                                                                       PROSITE (1)
                PROSITE (2) ------------------------------------------------------------CATALASE_2       ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATALASE_-------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1           Exon 1.2  PDB: A:22-79 UniProt: 23-80                     ------------------------------------Exon 1.4  PDB: A:116-159 UniProt: 117-160   Exon 1.5  PDB: A:160-194           Exon 1.6  PDB: A:195-236 UniProt: 196-237 Exon 1.7  PDB: A:237-263   Exon 1.8              ------------1Exon 1.11  PDB: A:299-349 UniProt: 300-350         Exon 1.12  PDB: A:350-396 UniProt: 351-397     -------------------------------------------Exon 1.14  PDB: A:440-475           Exon 1.15  PDB: A:476-501  Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------Exon 1.3  PDB: A:79-116               -------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9     -------------------------------------------------------------------------------------------------Exon 1.13  PDB: A:396-439 UniProt: 397-440  -------------------------------------------------------------- Transcript 1 (2)
                 1tgu A   3 NRDPASDQMKHWKEQRAAQKPDVLTTGGGNPVGDKLNSLTVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDALLFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMDGYGSHTFKLVNADGEAVYCKFHYKTDQGIKNLSVEDAARLAHEDPDYGLRDLFNAIATGNYPSWTLYIQVMTFSEAEIFPFNPFDLTKVWPHGDYPLIPVGKLVLNRNPVNYFAEVEQLAFDPSNMPPGIEPSPDKMLQGRLFAYPDTHRHRLGPNYLQIPVNCPYRARVANYQRDGPMCMMDNQGGAPNYYPNSFSAPEHQPSALEHRTHFSGDVQRFNSANDDNVTQVRTFYLKVLNEEQRKRLCENIAGHLKDAQLFIQKKAVKNFSDVHPEYGSRIQALLDKYNE 501
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492         


Chain B from PDB  Type:PROTEIN  Length:499
 aligned with CATA_BOVIN | P00432 from UniProtKB/Swiss-Prot  Length:527

    Alignment length:499
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493         
           CATA_BOVIN     4 NRDPASDQMKHWKEQRAAQKPDVLTTGGGNPVGDKLNSLTVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDALLFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQGIKNLSVEDAARLAHEDPDYGLRDLFNAIATGNYPSWTLYIQVMTFSEAEIFPFNPFDLTKVWPHGDYPLIPVGKLVLNRNPVNYFAEVEQLAFDPSNMPPGIEPSPDKMLQGRLFAYPDTHRHRLGPNYLQIPVNCPYRARVANYQRDGPMCMMDNQGGAPNYYPNSFSAPEHQPSALEHRTHFSGDVQRFNSANDDNVTQVRTFYLKVLNEEQRKRLCENIAGHLKDAQLFIQKKAVKNFSDVHPEYGSRIQALLDKYNE 502
               SCOP domains d1tgub_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhh.......................ee.........hhhhhhhhhhhh............eeeeeeeeee..................eeeeeeeee................eeeeeeee..eeeeeeee........hhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhhhhhhhhhh........ee....eeee.....eeeeeeeeee.......hhhhhhhhhhhh.hhhhhhhhhhhhh....eeeeeeeeehhhhhhhh.....................eeeeeee...hhhhhh.............eee..hhhhhhhhhhhhhhhhhhh..hhhhh.........................................hhhhh...eeeeeeee.........hhhhhhhhh...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------CATALASE_3  PDB: B:23-501 UniProt: 24-503                                                                                                                                                                                                                                                                                                                                                                                                                                                       PROSITE (1)
                PROSITE (2) ------------------------------------------------------------CATALASE_2       ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATALASE_-------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1           Exon 1.2  PDB: B:22-79 UniProt: 23-80                     ------------------------------------Exon 1.4  PDB: B:116-159 UniProt: 117-160   Exon 1.5  PDB: B:160-194           Exon 1.6  PDB: B:195-236 UniProt: 196-237 Exon 1.7  PDB: B:237-263   Exon 1.8              ------------1Exon 1.11  PDB: B:299-349 UniProt: 300-350         Exon 1.12  PDB: B:350-396 UniProt: 351-397     -------------------------------------------Exon 1.14  PDB: B:440-475           Exon 1.15  PDB: B:476-501  Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------Exon 1.3  PDB: B:79-116               -------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9     -------------------------------------------------------------------------------------------------Exon 1.13  PDB: B:396-439 UniProt: 397-440  -------------------------------------------------------------- Transcript 1 (2)
                 1tgu B   3 NRDPASDQMKHWKEQRAAQKPDVLTTGGGNPVGDKLNSLTVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDALLFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMDGYGSHTFKLVNADGEAVYCKFHYKTDQGIKNLSVEDAARLAHEDPDYGLRDLFNAIATGNYPSWTLYIQVMTFSEAEIFPFNPFDLTKVWPHGDYPLIPVGKLVLNRNPVNYFAEVEQLAFDPSNMPPGIEPSPDKMLQGRLFAYPDTHRHRLGPNYLQIPVNCPYRARVANYQRDGPMCMMDNQGGAPNYYPNSFSAPEHQPSALEHRTHFSGDVQRFNSANDDNVTQVRTFYLKVLNEEQRKRLCENIAGHLKDAQLFIQKKAVKNFSDVHPEYGSRIQALLDKYNE 501
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492         


Chain C from PDB  Type:PROTEIN  Length:499
 aligned with CATA_BOVIN | P00432 from UniProtKB/Swiss-Prot  Length:527

    Alignment length:499
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493         
           CATA_BOVIN     4 NRDPASDQMKHWKEQRAAQKPDVLTTGGGNPVGDKLNSLTVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDALLFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQGIKNLSVEDAARLAHEDPDYGLRDLFNAIATGNYPSWTLYIQVMTFSEAEIFPFNPFDLTKVWPHGDYPLIPVGKLVLNRNPVNYFAEVEQLAFDPSNMPPGIEPSPDKMLQGRLFAYPDTHRHRLGPNYLQIPVNCPYRARVANYQRDGPMCMMDNQGGAPNYYPNSFSAPEHQPSALEHRTHFSGDVQRFNSANDDNVTQVRTFYLKVLNEEQRKRLCENIAGHLKDAQLFIQKKAVKNFSDVHPEYGSRIQALLDKYNE 502
               SCOP domains d1tguc_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhh......................ee.........hhhhhhhhhhhh............eeeeeeeeee.........hhhhh....eeeeeeeee................eeeeeeee..eeeeeeee..........hhhhhhhhhhh........hhhhhhhhhhhh..hhhhhhhhhhhhhh........ee....eeee.....eeeeeeeeee.......hhhhhhhhhhhh.hhhhhhhhhhhhh....eeeeeeeeehhhhhhhh.................eeeeeeeeeee...hhhhhh.............ee...hhhhhhhhhhhhhhhhhhh..hhhhhhhhh.....................................hhhhh...ee...eee.........hhhhhhhhh...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------CATALASE_3  PDB: C:23-501 UniProt: 24-503                                                                                                                                                                                                                                                                                                                                                                                                                                                       PROSITE (1)
                PROSITE (2) ------------------------------------------------------------CATALASE_2       ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATALASE_-------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1           Exon 1.2  PDB: C:22-79 UniProt: 23-80                     ------------------------------------Exon 1.4  PDB: C:116-159 UniProt: 117-160   Exon 1.5  PDB: C:160-194           Exon 1.6  PDB: C:195-236 UniProt: 196-237 Exon 1.7  PDB: C:237-263   Exon 1.8              ------------1Exon 1.11  PDB: C:299-349 UniProt: 300-350         Exon 1.12  PDB: C:350-396 UniProt: 351-397     -------------------------------------------Exon 1.14  PDB: C:440-475           Exon 1.15  PDB: C:476-501  Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------Exon 1.3  PDB: C:79-116               -------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9     -------------------------------------------------------------------------------------------------Exon 1.13  PDB: C:396-439 UniProt: 397-440  -------------------------------------------------------------- Transcript 1 (2)
                 1tgu C   3 NRDPASDQMKHWKEQRAAQKPDVLTTGGGNPVGDKLNSLTVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDALLFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMDGYGSHTFKLVNADGEAVYCKFHYKTDQGIKNLSVEDAARLAHEDPDYGLRDLFNAIATGNYPSWTLYIQVMTFSEAEIFPFNPFDLTKVWPHGDYPLIPVGKLVLNRNPVNYFAEVEQLAFDPSNMPPGIEPSPDKMLQGRLFAYPDTHRHRLGPNYLQIPVNCPYRARVANYQRDGPMCMMDNQGGAPNYYPNSFSAPEHQPSALEHRTHFSGDVQRFNSANDDNVTQVRTFYLKVLNEEQRKRLCENIAGHLKDAQLFIQKKAVKNFSDVHPEYGSRIQALLDKYNE 501
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492         


Chain D from PDB  Type:PROTEIN  Length:499
 aligned with CATA_BOVIN | P00432 from UniProtKB/Swiss-Prot  Length:527

    Alignment length:499
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493         
           CATA_BOVIN     4 NRDPASDQMKHWKEQRAAQKPDVLTTGGGNPVGDKLNSLTVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDALLFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQGIKNLSVEDAARLAHEDPDYGLRDLFNAIATGNYPSWTLYIQVMTFSEAEIFPFNPFDLTKVWPHGDYPLIPVGKLVLNRNPVNYFAEVEQLAFDPSNMPPGIEPSPDKMLQGRLFAYPDTHRHRLGPNYLQIPVNCPYRARVANYQRDGPMCMMDNQGGAPNYYPNSFSAPEHQPSALEHRTHFSGDVQRFNSANDDNVTQVRTFYLKVLNEEQRKRLCENIAGHLKDAQLFIQKKAVKNFSDVHPEYGSRIQALLDKYNE 502
               SCOP domains d1tgud_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------Catalase-1tguD05 D:27-412                                                                                                                                                                                                                                                                                                                                                                         -----------------Catalase-rel-1tguD01 D:430-497                                      ---- Pfam domains (1)
           Pfam domains (2) ------------------------Catalase-1tguD06 D:27-412                                                                                                                                                                                                                                                                                                                                                                         -----------------Catalase-rel-1tguD02 D:430-497                                      ---- Pfam domains (2)
           Pfam domains (3) ------------------------Catalase-1tguD07 D:27-412                                                                                                                                                                                                                                                                                                                                                                         -----------------Catalase-rel-1tguD03 D:430-497                                      ---- Pfam domains (3)
           Pfam domains (4) ------------------------Catalase-1tguD08 D:27-412                                                                                                                                                                                                                                                                                                                                                                         -----------------Catalase-rel-1tguD04 D:430-497                                      ---- Pfam domains (4)
         Sec.struct. author ......hhhhhhhhhhh......................ee.........hhhhhhhhhhhh............eeeeeeeeee..................eeeeeeeee................eeeeeeee..eeeeeeee........hhhhhhhhhhhhh........hhhhhhhhhhhh..hhhhhhhhhhhhhh........ee....eeee.....eeeeeeeeee.......hhhhhhhhhhhh.hhhhhhhhhhhhh....eeeeeeeeehhhhhhhh..................eeeeeeeeee...hhhhhh.............ee...hhhhhhhhhhhhhhhhhhh..hhhhhhhhh.....................................hhhhh...ee...eeee........hhhhhhhhhh..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------CATALASE_3  PDB: D:23-501 UniProt: 24-503                                                                                                                                                                                                                                                                                                                                                                                                                                                       PROSITE (1)
                PROSITE (2) ------------------------------------------------------------CATALASE_2       ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATALASE_-------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1           Exon 1.2  PDB: D:22-79 UniProt: 23-80                     ------------------------------------Exon 1.4  PDB: D:116-159 UniProt: 117-160   Exon 1.5  PDB: D:160-194           Exon 1.6  PDB: D:195-236 UniProt: 196-237 Exon 1.7  PDB: D:237-263   Exon 1.8              ------------1Exon 1.11  PDB: D:299-349 UniProt: 300-350         Exon 1.12  PDB: D:350-396 UniProt: 351-397     -------------------------------------------Exon 1.14  PDB: D:440-475           Exon 1.15  PDB: D:476-501  Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------Exon 1.3  PDB: D:79-116               -------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9     -------------------------------------------------------------------------------------------------Exon 1.13  PDB: D:396-439 UniProt: 397-440  -------------------------------------------------------------- Transcript 1 (2)
                 1tgu D   3 NRDPASDQMKHWKEQRAAQKPDVLTTGGGNPVGDKLNSLTVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDALLFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMDGYGSHTFKLVNADGEAVYCKFHYKTDQGIKNLSVEDAARLAHEDPDYGLRDLFNAIATGNYPSWTLYIQVMTFSEAEIFPFNPFDLTKVWPHGDYPLIPVGKLVLNRNPVNYFAEVEQLAFDPSNMPPGIEPSPDKMLQGRLFAYPDTHRHRLGPNYLQIPVNCPYRARVANYQRDGPMCMMDNQGGAPNYYPNSFSAPEHQPSALEHRTHFSGDVQRFNSANDDNVTQVRTFYLKVLNEEQRKRLCENIAGHLKDAQLFIQKKAVKNFSDVHPEYGSRIQALLDKYNE 501
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1TGU)

(-) Pfam Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Catalase-rel] (18)
(-)
Clan: no clan defined [family: Catalase] (19)

(-) Gene Ontology  (38, 38)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (CATA_BOVIN | P00432)
molecular function
    GO:0050661    NADP binding    Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
    GO:0004046    aminoacylase activity    Catalysis of the reaction: an N-acyl-L-amino acid + H2O = a carboxylate + an L-amino acid.
    GO:0016209    antioxidant activity    Inhibition of the reactions brought about by dioxygen (O2) or peroxides. Usually the antioxidant is effective because it can itself be more easily oxidized than the substance protected. The term is often applied to components that can trap free radicals, thereby breaking the chain reaction that normally leads to extensive biological damage.
    GO:0004096    catalase activity    Catalysis of the reaction: 2 hydrogen peroxide = O2 + 2 H2O.
    GO:0019899    enzyme binding    Interacting selectively and non-covalently with any enzyme.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016684    oxidoreductase activity, acting on peroxide as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which the peroxide group acts as a hydrogen or electron acceptor.
    GO:0004601    peroxidase activity    Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0009650    UV protection    Any process in which an organism or cell protects itself from ultraviolet radiation (UV), which may also result in resistance to repeated exposure to UV.
    GO:0009060    aerobic respiration    The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
    GO:0098869    cellular oxidant detoxification    Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide.
    GO:0008203    cholesterol metabolic process    The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues.
    GO:0020027    hemoglobin metabolic process    The chemical reactions and pathways involving hemoglobin, including its uptake and utilization.
    GO:0042744    hydrogen peroxide catabolic process    The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2).
    GO:0032088    negative regulation of NF-kappaB transcription factor activity    Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of the transcription factor NF-kappaB.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0001649    osteoblast differentiation    The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, a mesodermal or neural crest cell that gives rise to bone.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0051092    positive regulation of NF-kappaB transcription factor activity    Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB.
    GO:0051781    positive regulation of cell division    Any process that activates or increases the frequency, rate or extent of cell division.
    GO:0014068    positive regulation of phosphatidylinositol 3-kinase signaling    Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the phosphatidylinositol 3-kinase cascade.
    GO:0051289    protein homotetramerization    The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits.
    GO:0051262    protein tetramerization    The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits.
    GO:0042542    response to hydrogen peroxide    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus.
    GO:0006979    response to oxidative stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
    GO:0000302    response to reactive oxygen species    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals.
    GO:0006641    triglyceride metabolic process    The chemical reactions and pathways involving triglyceride, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triglycerides are important components of plant oils, animal fats and animal plasma lipoproteins.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005925    focal adhesion    Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
    GO:0043231    intracellular membrane-bounded organelle    Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005778    peroxisomal membrane    The lipid bilayer surrounding a peroxisome.
    GO:0005777    peroxisome    A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.

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  1tgu
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  1.11.1.6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CATA_BOVIN | P00432: 1th2 1th3 1th4 3j7b 3nwl 3re8 3rgp 3rgs 4blc 5gkn 7cat 8cat

(-) Related Entries Specified in the PDB File

4blc