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1TGU
Asym. Unit
Info
Asym.Unit (356 KB)
Biol.Unit 1 (346 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF BOVINE LIVER CATALASE WITHOUT NADPH
Authors
:
R. Sugadev, D. Balasundaresan, M. N. Ponnuswamy, D. Kumaran, S. Swaminathan, K. Sekar
Date
:
31 May 04 (Deposition) - 05 Jul 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Bovine Liver Catalase, Nadph, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Sugadev, D. Balasundaresan, M. N. Ponnuswamy, D. Kumaran, S. Swaminathan, K. Sekar
The Crystal Structure Of Bovine Liver Catalase
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 4)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:71 , VAL A:72 , VAL A:73 , HIS A:74 , ARG A:111 , VAL A:145 , GLY A:146 , ASN A:147 , PHE A:160 , SER A:216 , HIS A:217 , LEU A:298 , PHE A:333 , MET A:349 , ARG A:353 , TYR A:357 , HIS A:361 , ARG A:364 , HOH A:2003 , HOH A:2006 , HOH A:2011 , HOH A:2025 , MET D:60
BINDING SITE FOR RESIDUE HEM A 2000
2
AC2
SOFTWARE
ARG B:71 , VAL B:72 , VAL B:73 , HIS B:74 , ARG B:111 , VAL B:145 , ASN B:147 , PHE B:152 , PHE B:160 , PHE B:333 , MET B:349 , ARG B:353 , ALA B:356 , TYR B:357 , THR B:360 , HIS B:361 , ARG B:364 , HOH B:2010 , HOH B:2018 , HOH B:2020 , HOH B:2023
BINDING SITE FOR RESIDUE HEM B 2001
3
AC3
SOFTWARE
MET B:60 , ARG C:71 , VAL C:72 , VAL C:73 , HIS C:74 , ARG C:111 , VAL C:145 , GLY C:146 , ASN C:147 , PHE C:160 , SER C:216 , HIS C:217 , LEU C:298 , PHE C:333 , MET C:349 , ARG C:353 , ALA C:356 , TYR C:357 , THR C:360 , HIS C:361 , ARG C:364 , HOH C:2007 , HOH C:2049
BINDING SITE FOR RESIDUE HEM C 2002
4
AC4
SOFTWARE
ARG D:71 , VAL D:72 , VAL D:73 , HIS D:74 , ARG D:111 , GLY D:130 , PHE D:131 , VAL D:145 , GLY D:146 , ASN D:147 , PHE D:160 , SER D:216 , LEU D:331 , PHE D:333 , MET D:349 , ARG D:353 , TYR D:357 , THR D:360 , HIS D:361 , ARG D:364
BINDING SITE FOR RESIDUE HEM D 2003
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: CATALASE_3 (A:23-501,B:23-501,C:23-501,D:23-50...)
2: CATALASE_2 (A:63-79,B:63-79,C:63-79,D:63-79)
3: CATALASE_1 (A:353-361,B:353-361,C:353-361,D:35...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CATALASE_3
PS51402
catalase family profile.
CATA_BOVIN
24-503
4
A:23-501
B:23-501
C:23-501
D:23-501
2
CATALASE_2
PS00438
Catalase proximal active site signature.
CATA_BOVIN
64-80
4
A:63-79
B:63-79
C:63-79
D:63-79
3
CATALASE_1
PS00437
Catalase proximal heme-ligand signature.
CATA_BOVIN
354-362
4
A:353-361
B:353-361
C:353-361
D:353-361
[
close PROSITE info
]
Exons
(15, 60)
Info
All Exons
Exon 1.1 (A:3-21 | B:3-21 | C:3-21 | D:3-21)
Exon 1.2 (A:22-79 | B:22-79 | C:22-79 | D:22...)
Exon 1.3 (A:79-116 | B:79-116 | C:79-116 | D...)
Exon 1.4 (A:116-159 | B:116-159 | C:116-159 ...)
Exon 1.5 (A:160-194 | B:160-194 | C:160-194 ...)
Exon 1.6 (A:195-236 | B:195-236 | C:195-236 ...)
Exon 1.7 (A:237-263 | B:237-263 | C:237-263 ...)
Exon 1.8 (A:264-285 | B:264-285 | C:264-285 ...)
Exon 1.9 (A:286-298 | B:286-298 | C:286-298 ...)
Exon 1.10 (A:298-298 | B:298-298 | C:298-298 ...)
Exon 1.11 (A:299-349 | B:299-349 | C:299-349 ...)
Exon 1.12 (A:350-396 | B:350-396 | C:350-396 ...)
Exon 1.13 (A:396-439 | B:396-439 | C:396-439 ...)
Exon 1.14 (A:440-475 | B:440-475 | C:440-475 ...)
Exon 1.15 (A:476-501 | B:476-501 | C:476-501 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12
13: Boundary 1.12/1.13
14: Boundary 1.13/1.14
15: Boundary 1.14/1.15
16: Boundary 1.15/1.16
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000027941
1
ENSBTAE00000227830
chr15:
64689389-64689454
66
CATA_BOVIN
1-22
22
4
A:3-21
B:3-21
C:3-21
D:3-21
19
19
19
19
1.2
ENSBTAT00000027941
2
ENSBTAE00000227831
chr15:
64702502-64702673
172
CATA_BOVIN
23-80
58
4
A:22-79
B:22-79
C:22-79
D:22-79
58
58
58
58
1.3
ENSBTAT00000027941
3
ENSBTAE00000227832
chr15:
64704111-64704221
111
CATA_BOVIN
80-117
38
4
A:79-116
B:79-116
C:79-116
D:79-116
38
38
38
38
1.4
ENSBTAT00000027941
4
ENSBTAE00000227833
chr15:
64705256-64705386
131
CATA_BOVIN
117-160
44
4
A:116-159
B:116-159
C:116-159
D:116-159
44
44
44
44
1.5
ENSBTAT00000027941
5
ENSBTAE00000227834
chr15:
64705936-64706040
105
CATA_BOVIN
161-195
35
4
A:160-194
B:160-194
C:160-194
D:160-194
35
35
35
35
1.6
ENSBTAT00000027941
6
ENSBTAE00000227835
chr15:
64706630-64706755
126
CATA_BOVIN
196-237
42
4
A:195-236
B:195-236
C:195-236
D:195-236
42
42
42
42
1.7
ENSBTAT00000027941
7
ENSBTAE00000329513
chr15:
64710914-64710994
81
CATA_BOVIN
238-264
27
4
A:237-263
B:237-263
C:237-263
D:237-263
27
27
27
27
1.8
ENSBTAT00000027941
8
ENSBTAE00000329511
chr15:
64710999-64711064
66
CATA_BOVIN
265-286
22
4
A:264-285
B:264-285
C:264-285
D:264-285
22
22
22
22
1.9
ENSBTAT00000027941
9
ENSBTAE00000329510
chr15:
64711069-64711106
38
CATA_BOVIN
287-299
13
4
A:286-298
B:286-298
C:286-298
D:286-298
13
13
13
13
1.10
ENSBTAT00000027941
10
ENSBTAE00000425927
chr15:
64711490-64711490
1
CATA_BOVIN
299-299
1
4
A:298-298
B:298-298
C:298-298
D:298-298
1
1
1
1
1.11
ENSBTAT00000027941
11
ENSBTAE00000227837
chr15:
64711570-64711722
153
CATA_BOVIN
300-350
51
4
A:299-349
B:299-349
C:299-349
D:299-349
51
51
51
51
1.12
ENSBTAT00000027941
12
ENSBTAE00000227838
chr15:
64715231-64715369
139
CATA_BOVIN
351-397
47
4
A:350-396
B:350-396
C:350-396
D:350-396
47
47
47
47
1.13
ENSBTAT00000027941
13
ENSBTAE00000227839
chr15:
64717926-64718056
131
CATA_BOVIN
397-440
44
4
A:396-439
B:396-439
C:396-439
D:396-439
44
44
44
44
1.14
ENSBTAT00000027941
14
ENSBTAE00000227840
chr15:
64722050-64722157
108
CATA_BOVIN
441-476
36
4
A:440-475
B:440-475
C:440-475
D:440-475
36
36
36
36
1.15
ENSBTAT00000027941
15
ENSBTAE00000227841
chr15:
64723897-64723980
84
CATA_BOVIN
477-504
28
4
A:476-501
B:476-501
C:476-501
D:476-501
26
26
26
26
1.16
ENSBTAT00000027941
16
ENSBTAE00000380789
chr15:
64724586-64724651
66
CATA_BOVIN
505-525
21
0
-
-
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1tgua_ (A:)
1b: SCOP_d1tguc_ (C:)
1c: SCOP_d1tgud_ (D:)
1d: SCOP_d1tgub_ (B:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Heme-dependent catalase-like
(82)
Superfamily
:
Heme-dependent catalase-like
(82)
Family
:
Heme-dependent catalases
(80)
Protein domain
:
automated matches
(32)
Cow (Bos taurus) [TaxId: 9913]
(5)
1a
d1tgua_
A:
1b
d1tguc_
C:
1c
d1tgud_
D:
1d
d1tgub_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
[
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Catalase_rel_1tguD01 (D:430-497)
1b: PFAM_Catalase_rel_1tguD02 (D:430-497)
1c: PFAM_Catalase_rel_1tguD03 (D:430-497)
1d: PFAM_Catalase_rel_1tguD04 (D:430-497)
2a: PFAM_Catalase_1tguD05 (D:27-412)
2b: PFAM_Catalase_1tguD06 (D:27-412)
2c: PFAM_Catalase_1tguD07 (D:27-412)
2d: PFAM_Catalase_1tguD08 (D:27-412)
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(
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(
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Catalase-rel]
(18)
Family
:
Catalase-rel
(18)
Bos taurus (Bovine)
(6)
1a
Catalase-rel-1tguD01
D:430-497
1b
Catalase-rel-1tguD02
D:430-497
1c
Catalase-rel-1tguD03
D:430-497
1d
Catalase-rel-1tguD04
D:430-497
Clan
:
no clan defined [family: Catalase]
(19)
Family
:
Catalase
(19)
Bos taurus (Bovine)
(6)
2a
Catalase-1tguD05
D:27-412
2b
Catalase-1tguD06
D:27-412
2c
Catalase-1tguD07
D:27-412
2d
Catalase-1tguD08
D:27-412
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