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(-) Description

Title :  THE NADPH BINDING SITE ON BEEF LIVER CATALASE
 
Authors :  M. R. N. Murthy, T. J. Reid Iii, A. Sicignano, N. Tanaka, I. Fita, M. G. Ro
Date :  15 Nov 84  (Deposition) - 01 Apr 85  (Release) - 21 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Oxidoreductase, H2O2 Acceptor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Fita, M. G. Rossmann
The Nadph Binding Site On Beef Liver Catalase.
Proc. Natl. Acad. Sci. Usa V. 82 1604 1985
PubMed-ID: 3856839  |  Reference-DOI: 10.1073/PNAS.82.6.1604
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CATALASE
    Chains: A, B
    EC Number: 1.11.1.6
    Engineered: YES
    Organism Common: BOVINE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Tissue: LIVER

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): BA

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1HEM4Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2NDP4Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:71 , VAL A:72 , VAL A:73 , HIS A:74 , ARG A:111 , GLY A:130 , VAL A:145 , GLY A:146 , ASN A:147 , ALA A:157 , PHE A:160 , LEU A:298 , PHE A:333 , MET A:349 , ARG A:353 , ALA A:356 , TYR A:357 , THR A:360 , HIS A:361 , ARG A:364 , HOH A:509 , HOH A:511 , ASP B:64BINDING SITE FOR RESIDUE HEM A 507
2AC2SOFTWAREHIS A:193 , PHE A:197 , SER A:200 , ARG A:202 , HIS A:234 , LYS A:236 , ILE A:241 , VAL A:301 , TRP A:302 , PRO A:303 , HIS A:304 , GLN A:441 , THR A:444 , PHE A:445 , VAL A:449 , HOH A:512 , HOH A:513BINDING SITE FOR RESIDUE NDP A 508
3AC3SOFTWAREASP A:64 , ARG B:71 , VAL B:72 , VAL B:73 , HIS B:74 , ARG B:111 , GLY B:130 , VAL B:145 , GLY B:146 , ASN B:147 , ALA B:157 , PHE B:160 , LEU B:298 , PHE B:333 , MET B:349 , ARG B:353 , ALA B:356 , TYR B:357 , THR B:360 , HIS B:361 , ARG B:364 , HOH B:517 , HOH B:519BINDING SITE FOR RESIDUE HEM B 507
4AC4SOFTWAREHIS B:193 , PHE B:197 , SER B:200 , ARG B:202 , HIS B:234 , LYS B:236 , ILE B:241 , VAL B:301 , TRP B:302 , PRO B:303 , HIS B:304 , GLN B:441 , THR B:444 , PHE B:445 , VAL B:449 , HOH B:520 , HOH B:521BINDING SITE FOR RESIDUE NDP B 508

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 7CAT)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Tyr A:404 -Pro A:405
2Tyr B:404 -Pro B:405

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 7CAT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 7CAT)

(-) Exons   (0, 0)

(no "Exon" information available for 7CAT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:498
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains d7cata_ A: Catalase I                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhh.................................hhhhhhhhhhhhhhh........eeeeeeeeeee.................eeeeeeeeeee..............eeeeeee......eeeeeee.......hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeeeeee..eeeeeeeeeeeeee.....hhhhhhhhhhhh.hhhhhhhhhhhhhhh.eeeeeeeeee.............................eeeee.....hhhhhhh.................hhhhhhhhhhhhhhhhhhhh......................................................................hhhhhhhhhhh...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 7cat A   3 NRDPASDQMKHWKEQRAAQKPDVLTTGGGNPVGDKLNSLTVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDALLFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMDGYGSHTFKLVNADGEAVYCKFHYKTDQGIKNLSVEDAARLAHEDPDYGLRDLFNAIATGNYPSWTLYIQVMTFSEAEIFPFNPFDLTKVWPHGDYPLIPVGKLVLNRNPVNYFAEVEQLAFDPSNMPPGIEPSPDKMLQGRLFAYPDTHRHRLGPNYLQIPVNCPYRARVANYQRDGPMCMMDNQGGAPNYYPNSFSAPEHQPSALEHRTHFSGDVQRFNSANDDNVTQVRTFYLKVLNEEQRKRLCENIAGHLKDAQLFIQKKAVKNFSDVHPEYGSRIQALLDKYN 500
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492        


Chain B from PDB  Type:PROTEIN  Length:498
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains d7catb_ B: Catalase I                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..................................................hhhhhhhhhhhhhhh........eeeeeeeeeee.................eeeeeeeeeee..............eeeeeee......eeeeeee.......hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeeeeee..eeeeeeeeeeeeee.....hhhhhhhhhhhh.hhhhhhhhhhhhhhh.eeeeeeeeee.............................eeeee.....hhhhhhh.................hhhhhhhhhhhhhhhhhhhh......................................................................hhhhhhhhhhh...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 7cat B   3 NRDPASDQMKHWKEQRAAQKPDVLTTGGGNPVGDKLNSLTVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDALLFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMDGYGSHTFKLVNADGEAVYCKFHYKTDQGIKNLSVEDAARLAHEDPDYGLRDLFNAIATGNYPSWTLYIQVMTFSEAEIFPFNPFDLTKVWPHGDYPLIPVGKLVLNRNPVNYFAEVEQLAFDPSNMPPGIEPSPDKMLQGRLFAYPDTHRHRLGPNYLQIPVNCPYRARVANYQRDGPMCMMDNQGGAPNYYPNSFSAPEHQPSALEHRTHFSGDVQRFNSANDDNVTQVRTFYLKVLNEEQRKRLCENIAGHLKDAQLFIQKKAVKNFSDVHPEYGSRIQALLDKYN 500
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 7CAT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 7CAT)

(-) Gene Ontology  (38, 38)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CATA_BOVIN | P00432: 1tgu 1th2 1th3 1th4 3j7b 3nwl 3re8 3rgp 3rgs 4blc 5gkn 8cat

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 7CAT)