1S7N - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   RIBOSOMAL L7/L12 ALPHA-N-PROTEIN ACETYLTRANSFERASE IN COMPLEX WITH COENZYME A (COA FREE SULFHYDRYL)

Authors :   M. W. Vetting, L. P. De Carvalho, S. L. Roderick, J. S Blanchard

Date :   29 Jan 04 (Deposition) - 15 Mar 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Acetyltransferase, Gnat, Alpha-N-Protein Acetyltransferase, Coenzyme A, L7/L12, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. W. Vetting, L. P. De Carvalho, S. L. Roderick, J. S. Blanchard
A Novel Dimeric Structure Of The Riml Nalpha-Acetyltransferase From Salmonella Typhimurium.
J. Biol. Chem. V. 280 22108 2005
PubMed-ID: 15817456 | Reference-DOI: 10.1074/JBC.M502401200

Molecule 1 - ACETYL TRANSFERASE
	Chains	:	A, B, C, D
	EC Number	:	2.3.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A+
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	RIML
	Organism Scientific	:	SALMONELLA TYPHIMURIUM
	Organism Taxid	:	99287
	Strain	:	LT2
	Synonym	:	ACETYLATING ENZYME FOR N-TERMINAL OF RIBOSOMAL PROTEIN L7/L12, RIML

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	COA	4	Ligand/Ion	COENZYME A

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	COA	2	Ligand/Ion	COENZYME A

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	COA	2	Ligand/Ion	COENZYME A

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TRP A:34 , SER A:38 , TYR A:98 , TRP A:99 , LEU A:100 , GLN A:105 , GLY A:106 , GLN A:107 , GLY A:108 , ILE A:109 , MET A:110 , SER A:111 , LYS A:133 , CYS A:134 , ASN A:138 , ALA A:140 , SER A:141 , VAL A:144 , ARG A:147 , HOH A:614 , HOH A:616 , HOH A:622 , HOH A:625 , HOH A:643 , HOH A:649	BINDING SITE FOR RESIDUE COA A 601
2	AC2	SOFTWARE	TRP B:34 , SER B:38 , TYR B:98 , TRP B:99 , LEU B:100 , GLN B:105 , GLY B:106 , GLN B:107 , GLY B:108 , ILE B:109 , MET B:110 , SER B:111 , GLN B:112 , LYS B:133 , CYS B:134 , ASN B:138 , ALA B:140 , SER B:141 , ARG B:147 , HOH B:618 , HOH B:637 , HOH B:639 , HOH B:679 , HOH B:708	BINDING SITE FOR RESIDUE COA B 601
3	AC3	SOFTWARE	TRP C:34 , SER C:38 , LEU C:39 , TYR C:98 , TRP C:99 , LEU C:100 , GLN C:105 , GLY C:106 , GLN C:107 , GLY C:108 , ILE C:109 , MET C:110 , SER C:111 , CYS C:134 , ASN C:138 , ALA C:140 , SER C:141 , VAL C:144 , ARG C:147 , HOH C:619 , HOH C:622 , HOH C:624 , HOH C:626 , HOH C:649 , HOH C:652 , HOH C:661	BINDING SITE FOR RESIDUE COA C 601
4	AC4	SOFTWARE	TRP D:34 , SER D:38 , LEU D:39 , TYR D:98 , TRP D:99 , LEU D:100 , GLN D:105 , GLY D:106 , GLN D:107 , GLY D:108 , ILE D:109 , MET D:110 , SER D:111 , CYS D:134 , ASN D:138 , ALA D:140 , SER D:141 , VAL D:144 , ARG D:147 , HOH D:604 , HOH D:605 , HOH D:627 , HOH D:631 , HOH D:632 , HOH D:683	BINDING SITE FOR RESIDUE COA D 601

(no "SS Bond" information available for 1S7N)

(no "Cis Peptide Bond" information available for 1S7N)

(no "SAP(SNP)/Variant" information available for 1S7N)

(no "PROSITE Motif" information available for 1S7N)

(no "Exon" information available for 1S7N)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:177
 aligned with Q8ZPC0_SALTY | Q8ZPC0 from UniProtKB/TrEMBL  Length:179

    Alignment length:177
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       
         Q8ZPC0_SALTY     2 VEIIPVSTTLELRAADESHVPALHQLVLKNKAWLQQSLDWPQYVTSQEETRKHVQGNILLHQRGYAKMYLIFCQNEMAGVLSFNAIEPINKAAYIGYWLDESFQGQGIMSQSLQALMTHYARRGDIRRFVIKCRVDNQASNAVARRNHFTLEGCMKQAEYLNGDYHDVNMYARIIDA 178
               SCOP domains d1s7na_ A: automated matches                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....eeeee.hhhhhhhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeee..eeeeeeeeeeee....eeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeeeeeeeee..eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s7n A   2 VEIIPVSTTLELRAADESHVPALHQLVLKNKAWLQQSLDWPQYVTSQEETRKHVQGNILLHQRGYAKMYLIFCQNEMAGVLSFNAIEPINKAAYIGYWLDESFQGQGIMSQSLQALMTHYARRGDIRRFVIKCRVDNQASNAVARRNHFTLEGCMKQAEYLNGDYHDVNMYARIIDA 178
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171

Chain B from PDB  Type:PROTEIN  Length:179
 aligned with Q8ZPC0_SALTY | Q8ZPC0 from UniProtKB/TrEMBL  Length:179

    Alignment length:179
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170         
         Q8ZPC0_SALTY     1 MVEIIPVSTTLELRAADESHVPALHQLVLKNKAWLQQSLDWPQYVTSQEETRKHVQGNILLHQRGYAKMYLIFCQNEMAGVLSFNAIEPINKAAYIGYWLDESFQGQGIMSQSLQALMTHYARRGDIRRFVIKCRVDNQASNAVARRNHFTLEGCMKQAEYLNGDYHDVNMYARIIDAD 179
               SCOP domains d1s7nb_ B: automated matches                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee....eeeee.hhhhhhhhhhhhhhhhhhhh...hhhhhh.hhhhhhhhhhhhhhhhhh...eeeeeee..eeeeeeeeeeee....eeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeeeeeeeee..eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s7n B   1 MVEIIPVSTTLELRAADESHVPALHQLVLKNKAWLQQSLDWPQYVTSQEETRKHVQGNILLHQRGYAKMYLIFCQNEMAGVLSFNAIEPINKAAYIGYWLDESFQGQGIMSQSLQALMTHYARRGDIRRFVIKCRVDNQASNAVARRNHFTLEGCMKQAEYLNGDYHDVNMYARIIDAD 179
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

Chain C from PDB  Type:PROTEIN  Length:176
 aligned with Q8ZPC0_SALTY | Q8ZPC0 from UniProtKB/TrEMBL  Length:179

    Alignment length:176
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172      
         Q8ZPC0_SALTY     3 EIIPVSTTLELRAADESHVPALHQLVLKNKAWLQQSLDWPQYVTSQEETRKHVQGNILLHQRGYAKMYLIFCQNEMAGVLSFNAIEPINKAAYIGYWLDESFQGQGIMSQSLQALMTHYARRGDIRRFVIKCRVDNQASNAVARRNHFTLEGCMKQAEYLNGDYHDVNMYARIIDA 178
               SCOP domains d1s7nc_ C: automated matches                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee....eeeee.hhhhhhhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhhhhhhhhhhh...eeeeeee..eeeeeeeeeeee....eeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeeeeeeeee..eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s7n C   3 EIIPVSTTLELRAADESHVPALHQLVLKNKAWLQQSLDWPQYVTSQEETRKHVQGNILLHQRGYAKMYLIFCQNEMAGVLSFNAIEPINKAAYIGYWLDESFQGQGIMSQSLQALMTHYARRGDIRRFVIKCRVDNQASNAVARRNHFTLEGCMKQAEYLNGDYHDVNMYARIIDA 178
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain D from PDB  Type:PROTEIN  Length:177
 aligned with Q8ZPC0_SALTY | Q8ZPC0 from UniProtKB/TrEMBL  Length:179

    Alignment length:177
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       
         Q8ZPC0_SALTY     3 EIIPVSTTLELRAADESHVPALHQLVLKNKAWLQQSLDWPQYVTSQEETRKHVQGNILLHQRGYAKMYLIFCQNEMAGVLSFNAIEPINKAAYIGYWLDESFQGQGIMSQSLQALMTHYARRGDIRRFVIKCRVDNQASNAVARRNHFTLEGCMKQAEYLNGDYHDVNMYARIIDAD 179
               SCOP domains d1s7nd_ D: automated matches                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------Acetyltransf_3-1s7nD01 D:10-151                                                                                                               ---------------------------- Pfam domains (1)
           Pfam domains (2) -------Acetyltransf_3-1s7nD02 D:10-151                                                                                                               ---------------------------- Pfam domains (2)
           Pfam domains (3) -------Acetyltransf_3-1s7nD03 D:10-151                                                                                                               ---------------------------- Pfam domains (3)
           Pfam domains (4) -------Acetyltransf_3-1s7nD04 D:10-151                                                                                                               ---------------------------- Pfam domains (4)
         Sec.struct. author .eee....eeeee.hhhhhhhhhhhhhhhhhhhh...hhhhhh.hhhhhhhhhhhhhhhhhh...eeeeeee..eeeeeeeeeeee....eeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeeeeeeeee..eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s7n D   3 EIIPVSTTLELRAADESHVPALHQLVLKNKAWLQQSLDWPQYVTSQEETRKHVQGNILLHQRGYAKMYLIFCQNEMAGVLSFNAIEPINKAAYIGYWLDESFQGQGIMSQSLQALMTHYARRGDIRRFVIKCRVDNQASNAVARRNHFTLEGCMKQAEYLNGDYHDVNMYARIIDAD 179
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Acyl-CoA N-acyltransferases (Nat) (250)

Superfamily: Acyl-CoA N-acyltransferases (Nat) (250)

Family: automated matches (63)

Protein domain: automated matches (63)

Salmonella typhimurium [TaxId: 99287] (4)

1a	d1s7na_	A:
1b	d1s7nb_	B:
1c	d1s7nc_	C:
1d	d1s7nd_	D:

(no "CATH Domain" information available for 1S7N)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Acetyltrans (109)

Family: Acetyltransf_3 (9)

Salmonella typhimurium (3)

1a	Acetyltransf_3-1s7nD01	D:10-151
1b	Acetyltransf_3-1s7nD02	D:10-151
1c	Acetyltransf_3-1s7nD03	D:10-151
1d	Acetyltransf_3-1s7nD04	D:10-151

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (Q8ZPC0_SALTY | Q8ZPC0)

molecular function
	GO:0008080	N-acetyltransferase activity	Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
	GO:0017198	N-terminal peptidyl-serine acetylation	The acetylation of the N-terminal serine of proteins to form the derivative N-acetyl-L-serine.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1s7n)

Biological Units
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	1s7n
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	2.3.1.-
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UniProtKB/TrEMBL
	Q8ZPC0_SALTY \| Q8ZPC0	:	1s7f 1s7k 1s7l 1z9u

1s7f	THE SAME PROTEIN IN DIFFERENT SPACE GROUP (APO FORM1)
1s7k	THE SAME PROTEIN IN DIFFERENT SPACE GROUP (APO FORM2)
1s7l	THE SAME PROTEIN IN COMPLEX WITH COA BUT IN A DIFFERENT SPACE GROUP, AND WITH THE SULFHYDRYL OF COA IN A DISULFIDE BOND WITH CYS134

Description

Compounds

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Ligands, Modified Residues, Ions (1, 4)

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SS Bonds (0, 0)

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