Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN TRYPTOPHANYL-TRNA SYNTHETASE
 
Authors :  X. -L. Yang, F. J. Otero, R. J. Skene, D. E. Mcree, L. Ribas De Pouplana, P. Schimmel
Date :  16 Oct 03  (Deposition) - 06 Jan 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Class Ic Trna Synthetase, Rossmann Fold Catalytical Domain, Anticodon Recognition Domain, Bound Trp-Amp, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  X. -L. Yang, F. J. Otero, R. J. Skene, D. E. Mcree, P. Schimmel, L. Ribas De Pouplana
Crystal Structures That Suggest Late Development Of Genetic Code Components For Differentiating Aromatic Side Chains
Proc. Natl. Acad. Sci. Usa V. 100 15376 2003
PubMed-ID: 14671330  |  Reference-DOI: 10.1073/PNAS.2136794100

(-) Compounds

Molecule 1 - TRYPTOPHANYL-TRNA SYNTHETASE
    ChainsA, B
    EC Number6.1.1.2
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET20B+
    Expression System StrainB834(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneWARS
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymTRYPTOPHAN--TRNA LIGASE, TRPRS, IFP53, HWRS

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 24)

Asymmetric/Biological Unit (3, 24)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE21Mod. Amino AcidSELENOMETHIONINE
3TYM1Ligand/IonTRYPTOPHANYL-5'AMP

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:159 , THR A:160 , GLY A:161 , ARG A:162 , GLY A:163 , GLY A:172 , HIS A:173 , PRO A:176 , GLN A:194 , GLU A:199 , GLN A:284 , ALA A:310 , ASP A:312 , GLN A:313 , PHE A:317 , PHE A:339 , PHE A:340 , LYS A:349 , MSE A:350 , HOH A:1002 , HOH A:1007 , HOH A:1018 , HOH A:1028 , HOH A:1044 , HOH A:1113BINDING SITE FOR RESIDUE TYM A 501
2AC2SOFTWARELYS A:253 , ARG A:326 , ILE A:327 , TYR B:201 , THR B:207 , LEU B:208 , HOH B:1138 , HOH B:1213 , HOH B:1285BINDING SITE FOR RESIDUE GOL B 601
3AC3SOFTWAREASP A:101 , LYS A:111 , GLY A:135 , PHE A:138BINDING SITE FOR RESIDUE GOL A 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1R6T)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1R6T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 3)

Asymmetric/Biological Unit (2, 3)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_052406A54SSYWC_HUMANPolymorphism2234521AA54S
2UniProtVAR_036466E455DSYWC_HUMANUnclassified  ---A/BE455D

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (3, 4)

Asymmetric/Biological Unit (3, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1WHEP_TRS_2PS51185 WHEP-TRS domain profile.SYWC_HUMAN8-64  1A:8-60
2WHEP_TRS_1PS00762 WHEP-TRS domain signature.SYWC_HUMAN19-47  1A:19-47
3AA_TRNA_LIGASE_IPS00178 Aminoacyl-transfer RNA synthetases class-I signature.SYWC_HUMAN164-174
 
  2A:164-174
B:164-174

(-) Exons   (10, 19)

Asymmetric/Biological Unit (10, 19)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2aENST000003928822aENSE00001513471chr14:100841927-100841620308SYWC_HUMAN-00--
1.3ENST000003928823ENSE00002192528chr14:100835595-100835424172SYWC_HUMAN1-33331A:7-33
-
27
-
1.4ENST000003928824ENSE00001607458chr14:100828258-100828045214SYWC_HUMAN34-105722A:34-105 (gaps)
B:97-105
72
9
1.5ENST000003928825ENSE00000941372chr14:100826999-100826891109SYWC_HUMAN105-141372A:105-141
B:105-141
37
37
1.6ENST000003928826ENSE00000941373chr14:100820903-100820784120SYWC_HUMAN141-181412A:141-181
B:141-181
41
41
1.7ENST000003928827ENSE00000941374chr14:100820206-100820024183SYWC_HUMAN181-242622A:181-242
B:181-242
62
62
1.8ENST000003928828ENSE00000941375chr14:100813183-100813083101SYWC_HUMAN242-276352A:242-276
B:242-276
35
35
1.9ENST000003928829ENSE00000941376chr14:100809724-100809612113SYWC_HUMAN276-313382A:276-313
B:276-313
38
38
1.10ENST0000039288210ENSE00000941377chr14:100808908-100808735174SYWC_HUMAN314-371582A:314-371
B:314-371 (gaps)
58
58
1.11ENST0000039288211ENSE00000941378chr14:100803539-100803399141SYWC_HUMAN372-418472A:372-418
B:372-418
47
47
1.12bENST0000039288212bENSE00001314927chr14:100801373-1008001251249SYWC_HUMAN419-471532A:419-467
B:419-467
49
49

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:440
 aligned with SYWC_HUMAN | P23381 from UniProtKB/Swiss-Prot  Length:471

    Alignment length:461
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466 
           SYWC_HUMAN     7 ASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGEDYKADCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLS 467
               SCOP domains d1r6ta1 A:7-60                                        ---------------------d1r6ta2 A:82-467 Tryptophanyl-tRNA synthetase (TrpRS)                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1r6tA01 A:7-60  [code=1.10.287.10, no name defined]   ---------------------1r6tA02 A:82-353 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1                                                                                                                                                                                                          1r6tA03 A:354-467 Tyrosyl-Transfer RNA Synthetase                                                                  CATH domains
               Pfam domains -----WHEP-TRS-1r6tA01 A:12-60                         ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh......---------------------..ee....ee.......hhhhhhhhhh.ee.hhhhhhhhhhhhh...hhhhhh..eeeeehhhhhhhhhhh...eeeeeee.......hhhhhhhhhhhhhhhhhhh..eeeeehhhhhhhhh..hhhhhhhhhhhhhhhhhh.......eeeeehhhhhhhh.hhhhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhhhhhh....eeeee...ee..eeeee..............hhhhhhhhhhhhh......hhhhhhhhh.....hhhhhhhhhhh.hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------S----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D------------ SAPs(SNPs)
                PROSITE (1) -WHEP_TRS_2  PDB: A:8-60 UniProt: 8-64                    ---------------------------------------------------------------------------------------------------AA_TRNA_LIG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ------------WHEP_TRS_1  PDB: A:19-47     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.3  PDB: A:7-33      Exon 1.4  PDB: A:34-105 (gaps) UniProt: 34-105                          -----------------------------------Exon 1.6  PDB: A:141-181 UniProt: 141-181------------------------------------------------------------Exon 1.8  PDB: A:242-276           -------------------------------------Exon 1.10  PDB: A:314-371 UniProt: 314-371                Exon 1.11  PDB: A:372-418 UniProt: 372-418     Exon 1.12b  PDB: A:419-467 UniProt: 419-471       Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------------------Exon 1.5  PDB: A:105-141             ---------------------------------------Exon 1.7  PDB: A:181-242 UniProt: 181-242                     ---------------------------------Exon 1.9  PDB: A:276-313              ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1r6t A   7 ASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKmLVSLKmSYKAAAGEDYKA---------------------EDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDmNQVLDAYENKKPFYLYTGRGPSSEAmHVGHLIPFIFTKWLQDVFNVPLVIQmTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYmGmSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRmTRDVAPRIGYPKPALLHSTFFPALQGAQTKmSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFmYLTFFLEDDDKLEQIRKDYTSGAmLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFmTPRKLA 467
                                    16        26        36     |  46 |      56   |     -         -     |  86        96       106       116       126       136      |146       156       166  |    176       186       196       206       216       226       236    | |246       256       266       276       286       296       306       316  |    326       336       346   |   356       366       376       386       396    |  406       416       426       436       446       456    |  466 
                                                              42-MSE |          60                    82                                                          143-MSE                   169-MSE                   195-MSE                                       241-MSE                                                                       319-MSE                        350-MSE                                            401-MSE                 425-MSE                             461-MSE  
                                                                    48-MSE                                                                                                                                                                                            243-MSE                                                                                                                                                                                                                            

Chain B from PDB  Type:PROTEIN  Length:362
 aligned with SYWC_HUMAN | P23381 from UniProtKB/Swiss-Prot  Length:471

    Alignment length:371
                                   106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466 
           SYWC_HUMAN    97 GIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLS 467
               SCOP domains d1r6tb_ B: Tryptophanyl-tRNA synthetase (TrpRS)                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1r6tB01 B:97-345 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1                                                                                                                                                                                   ---------1r6tB02 B:355-467 Tyrosyl-Transfer RNA Synthetase                                                                 CATH domains
           Pfam domains (1) ------------------------------------------------------tRNA-synt_1b-1r6tB01 B:151-443                                                                                                                                                                                                                                                                       ------------------------ Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------tRNA-synt_1b-1r6tB02 B:151-443                                                                                                                                                                                                                                                                       ------------------------ Pfam domains (2)
         Sec.struct. author ..hhhhhhhhhh.ee.hhhhhhhhhhhhh...hhhhhh..eeeeehhhhhhhhhhh....eeeeee.......hhhhhhhhhhhhhhhhhhh..eeeeehhhhhhhhh..hhhhhhhhhhhhhhhhhh.......eeeeehhhhhhhh.hhhhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh......eeeeee..hhhhhhhhhhhhhhh.....eeeee........---------.........hhhhhhhhhhhhh......hhhhhhhhh.....hhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D------------ SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------AA_TRNA_LIG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.4 -----------------------------------Exon 1.6  PDB: B:141-181 UniProt: 141-181------------------------------------------------------------Exon 1.8  PDB: B:242-276           -------------------------------------Exon 1.10  PDB: B:314-371 (gaps) UniProt: 314-371         Exon 1.11  PDB: B:372-418 UniProt: 372-418     Exon 1.12b  PDB: B:419-467 UniProt: 419-471       Transcript 1 (1)
           Transcript 1 (2) --------Exon 1.5  PDB: B:105-141             ---------------------------------------Exon 1.7  PDB: B:181-242 UniProt: 181-242                     ---------------------------------Exon 1.9  PDB: B:276-313              ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1r6t B  97 GIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDmNQVLDAYENKKPFYLYTGRGPSSEAmHVGHLIPFIFTKWLQDVFNVPLVIQmTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYmGmSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRmTRDVAPRIGYPKPALLHSTFFPALQG---------PNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFmYLTFFLEDDDKLEQIRKDYTSGAmLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFmTPRKLA 467
                                   106       116       126       136      |146       156       166  |    176       186       196       206       216       226       236    | |246       256       266       276       286       296       306       316  |    326       336        |-       356       366       376       386       396    |  406       416       426       436       446       456    |  466 
                                                                        143-MSE                   169-MSE                   195-MSE                                       241-MSE                                                                       319-MSE                   345       355                                           401-MSE                 425-MSE                             461-MSE  
                                                                                                                                                                            243-MSE                                                                                                                                                                                                                            

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 3)

Asymmetric/Biological Unit

(-) CATH Domains  (3, 5)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 3)

Asymmetric/Biological Unit
(-)
Clan: HUP (230)

(-) Gene Ontology  (16, 16)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (SYWC_HUMAN | P23381)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0004812    aminoacyl-tRNA ligase activity    Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004830    tryptophan-tRNA ligase activity    Catalysis of the reaction: ATP + L-tryptophan + tRNA(Trp) = AMP + diphosphate + L-tryptophanyl-tRNA(Trp).
biological process
    GO:0001525    angiogenesis    Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels.
    GO:0008285    negative regulation of cell proliferation    Any process that stops, prevents or reduces the rate or extent of cell proliferation.
    GO:0045765    regulation of angiogenesis    Any process that modulates the frequency, rate or extent of angiogenesis.
    GO:0006418    tRNA aminoacylation for protein translation    The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
    GO:0006436    tryptophanyl-tRNA aminoacylation    The process of coupling tryptophan to tryptophanyl-tRNA, catalyzed by tryptophanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    TYM  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1r6t)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1r6t
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  SYWC_HUMAN | P23381
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  6.1.1.2
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  SYWC_HUMAN | P23381
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SYWC_HUMAN | P233811o5t 1r6u 1ulh 2ake 2azx 2dr2 2quh 2qui 2quj 2quk

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1R6T)