1R4N - JenaLib

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:516
 aligned with ULA1_HUMAN | Q13564 from UniProtKB/Swiss-Prot  Length:534

    Alignment length:529
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525         
           ULA1_HUMAN     6 KLLKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQTSATFQL 534
               SCOP domains d1r4na_ A: Amyloid beta precursor protein-binding protein 1, APPBP1                                                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1r4nA01 A:6-178,A:388-534 NAD(P)-binding Rossmann-like Domain                                                                                                                -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1r4nA01 A:6-178,A:388-534 NAD(P)-binding Rossmann-like Domain                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh...eee...hhhhhhhhhhhhh....eeeee.....hhhhhh.....hhhhh..hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhh...eeeeeee..eeeeeee...eee.................hhhhhhhhhh.--------.....hhhhhhhhhhhhhhhh.........hhhhhhhhhhhh....-----...hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhheee...hhhhhhh....hhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh........eeee....eeee... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------F------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.1a    ----------------------------------Exon 2.4  PDB: A:53-7----------Exon 2.6  PDB: A:84-107 Exon 2.7  PDB: A:108-134   ------------------------------------Exon 2.9  PDB: A:171-199 [INCOMPLETE]Exon 2.10            Exon 2.11             ------------------------------Exon 2.13           Exon 2.14  PDB: A:301-345 UniProt: 301-345   -------------------------Exon 2.16     ----------------------------Exon 2.18  PDB: A:413-444       -------------------------------------Exon 2.20         ----------------------------------- Transcript 2 (1)
           Transcript 2 (2) ------------Exon 2.3a  PDB: A:18-53             -------------------Exon 2.5   --------------------------------------------------Exon 2.8  PDB: A:134-171              ------------------------------------------------------------------------------Exon 2.12  PDB: A:250-280 (gaps----------------------------------------------------------------Exon 2.15  PDB: A:345-370 -------------Exon 2.17  PDB: A:384-413     ------------------------------Exon 2.19  PDB: A:444-482              ----------------Exon 2.21b  PDB: A:499-534           Transcript 2 (2)
                 1r4n A   6 KLLKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQSY--------DHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILK-----PEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQTSATFQL 534
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195   |     -  |    215       225       235       245       | -   |   265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525         
                                                                                                                                                                                                                           199      208                                          253   259

Chain B from PDB  Type:PROTEIN  Length:418
 aligned with UBA3_HUMAN | Q8TBC4 from UniProtKB/Swiss-Prot  Length:463

    Alignment length:430
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462
           UBA3_HUMAN    33 DWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFT 462
               SCOP domains d1r4nb_ B: UBA3                                                                                                                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1r4nB01 B:12-209,B:289-339 NAD(P)-binding Rossmann-like Domain                                                                                                                                        --1r4nB02 B:212-288 Ubiquitin activating enzymes (Uba3). Chain: B, domain 2    1r4nB01 B:12-209,B:289-339                         1r4nB03 B:340-602                                           ------       ---------- ------------------ CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhh..............hhhhhhhhhh.eeee...hhhhhhhhhhhhh...eeeee.....hhhhh......hhhhh..hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhh...eeee...hhhhhhhhhhhhhhh..ee..ee.hhhh..eeeeeee..eeeeeee..........hhhhh......hhhhhhh...hhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh........eeee.........................ee...........hhhhhhhh........eeee.----.eeeee..hhhhhh...-------..hhhhhh..-...ee.........eeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UBIQUITIN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 3 (1) Exon 3.3a  PDB: B:12-40      Exon 3.4a  PDB: B:41-67    Exon 3.5a  PDB: B:68-95     --------------------------Exon 3.7a       ---------------------Exon 3.9  PDB: B:159-210 UniProt: 180-231           Exon 3.10  PDB: B:211-245          -------------------------------------Exon 3.12          -----------Exon 3.14  PDB: B:313-340   Exon 3.15  PDB: B:341-374         ---------------------Exon 3.17          --------------------------- Transcript 3 (1)
           Transcript 3 (2) -----------------------------------------------------------------------------------Exon 3.6  PDB: B:95-122     --------------Exon 3.8              --------------------------------------------------------------------------------------Exon 3.11a  PDB: B:245-283             -----------------Exon 3.13    ------------------------------------------------------------Exon 3.16             ------------------Exon 3.18b UniProt: 435-463  Transcript 3 (2)
                 1r4n B  12 DWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITAT----NRTLYLQSVTSIEERTR-------KELGLVDGQE-AVADVTTPQTVLFKLHFT 917
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381  |    391    || 604   |     - |     801| |    907       917
                                                                                                                                                                                                                                                                                                                                                                                                              384  389    396|     608     700   706| | |                 
                                                                                                                                                                                                                                                                                                                                                                                                                           600                    800 | |                 
                                                                                                                                                                                                                                                                                                                                                                                                                                                    802 |                 
                                                                                                                                                                                                                                                                                                                                                                                                                                                      900

Chain C from PDB  Type:PROTEIN  Length:516
 aligned with ULA1_HUMAN | Q13564 from UniProtKB/Swiss-Prot  Length:534

    Alignment length:529
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525         
           ULA1_HUMAN     6 KLLKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQTSATFQL 534
               SCOP domains d1r4nc_ C: Amyloid beta precursor protein-binding protein 1, APPBP1                                                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1r4nC01 C:6-178,C:388-534 NAD(P)-binding Rossmann-like Domain                                                                                                                -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1r4nC01 C:6-178,C:388-534 NAD(P)-binding Rossmann-like Domain                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh...eee...hhhhhhhhhhhhh....eeeee.....hhhhhh.....hhhhh..hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhh...eeeeeee..eeeeeee...eee.................hhhhhhhhhh.--------.....hhhhhhhhhhhhhhhh.........hhhhhhhhhhhh....-----...hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhheee...hhhhhhh....hhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh........eeee....eeee... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------F------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.1a    ----------------------------------Exon 2.4  PDB: C:53-7----------Exon 2.6  PDB: C:84-107 Exon 2.7  PDB: C:108-134   ------------------------------------Exon 2.9  PDB: C:171-199 [INCOMPLETE]Exon 2.10            Exon 2.11             ------------------------------Exon 2.13           Exon 2.14  PDB: C:301-345 UniProt: 301-345   -------------------------Exon 2.16     ----------------------------Exon 2.18  PDB: C:413-444       -------------------------------------Exon 2.20         ----------------------------------- Transcript 2 (1)
           Transcript 2 (2) ------------Exon 2.3a  PDB: C:18-53             -------------------Exon 2.5   --------------------------------------------------Exon 2.8  PDB: C:134-171              ------------------------------------------------------------------------------Exon 2.12  PDB: C:250-280 (gaps----------------------------------------------------------------Exon 2.15  PDB: C:345-370 -------------Exon 2.17  PDB: C:384-413     ------------------------------Exon 2.19  PDB: C:444-482              ----------------Exon 2.21b  PDB: C:499-534           Transcript 2 (2)
                 1r4n C   6 KLLKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQSY--------DHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILK-----PEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQTSATFQL 534
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195   |     -  |    215       225       235       245       | -   |   265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525         
                                                                                                                                                                                                                           199      208                                          253   259

Chain D from PDB  Type:PROTEIN  Length:418
 aligned with UBA3_HUMAN | Q8TBC4 from UniProtKB/Swiss-Prot  Length:463

    Alignment length:430
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462
           UBA3_HUMAN    33 DWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFT 462
               SCOP domains d1r4nd_ D: UBA3                                                                                                                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1r4nD01 D:12-209,D:289-339 NAD(P)-binding Rossmann-like Domain                                                                                                                                        --1r4nD02 D:212-288 Ubiquitin activating enzymes (Uba3). Chain: B, domain 2    1r4nD01 D:12-209,D:289-339                         1r4nD03 D:340-602                                           ------       ---------- ------------------ CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhh..............hhhhhhhhhheeeee...hhhhhhhhhhhhh...eeeee.....hhhhh......hhhhh..hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhh...eeee...hhhhhhhhhhhhhhh..ee..ee.hhhh..eeeeeee..eeeeeee..........hhhhh......hhhhhhh...hhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh........eeee.........................ee...........hhhhhhhh........eeee.----.eeeee..hhhhhh...-------..hhhhhh..-...ee...........ee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UBIQUITIN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 3 (1) Exon 3.3a  PDB: D:12-40      Exon 3.4a  PDB: D:41-67    Exon 3.5a  PDB: D:68-95     --------------------------Exon 3.7a       ---------------------Exon 3.9  PDB: D:159-210 UniProt: 180-231           Exon 3.10  PDB: D:211-245          -------------------------------------Exon 3.12          -----------Exon 3.14  PDB: D:313-340   Exon 3.15  PDB: D:341-374         ---------------------Exon 3.17          --------------------------- Transcript 3 (1)
           Transcript 3 (2) -----------------------------------------------------------------------------------Exon 3.6  PDB: D:95-122     --------------Exon 3.8              --------------------------------------------------------------------------------------Exon 3.11a  PDB: D:245-283             -----------------Exon 3.13    ------------------------------------------------------------Exon 3.16             ------------------Exon 3.18b UniProt: 435-463  Transcript 3 (2)
                 1r4n D  12 DWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITAT----NRTLYLQSVTSIEERTR-------KELGLVDGQE-AVADVTTPQTVLFKLHFT 917
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381  |    391    || 604   |     - |     801| |    907       917
                                                                                                                                                                                                                                                                                                                                                                                                              384  389    396|     608     700   706| | |                 
                                                                                                                                                                                                                                                                                                                                                                                                                           600                    800 | |                 
                                                                                                                                                                                                                                                                                                                                                                                                                                                    802 |                 
                                                                                                                                                                                                                                                                                                                                                                                                                                                      900

Chain E from PDB  Type:PROTEIN  Length:516
 aligned with ULA1_HUMAN | Q13564 from UniProtKB/Swiss-Prot  Length:534

    Alignment length:529
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525         
           ULA1_HUMAN     6 KLLKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQTSATFQL 534
               SCOP domains d1r4ne_ E: Amyloid beta precursor protein-binding protein 1, APPBP1                                                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1r4nE01 E:6-178,E:388-534 NAD(P)-binding Rossmann-like Domain                                                                                                                -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1r4nE01 E:6-178,E:388-534 NAD(P)-binding Rossmann-like Domain                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh...eee...hhhhhhhhhhhhh....eeeee.....hhhhhhhh...hhhhh..hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhh...eeeeeee..eeeeeee...eee.................hhhhhhhhhh.--------.....hhhhhhhhhhhhhhhh.........hhhhhhhhhhhh....-----...hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhheee...hhhhhhh....hhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh........eeee....eeee... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------F------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.1a    ----------------------------------Exon 2.4  PDB: E:53-7----------Exon 2.6  PDB: E:84-107 Exon 2.7  PDB: E:108-134   ------------------------------------Exon 2.9  PDB: E:171-199 [INCOMPLETE]Exon 2.10            Exon 2.11             ------------------------------Exon 2.13           Exon 2.14  PDB: E:301-345 UniProt: 301-345   -------------------------Exon 2.16     ----------------------------Exon 2.18  PDB: E:413-444       -------------------------------------Exon 2.20         ----------------------------------- Transcript 2 (1)
           Transcript 2 (2) ------------Exon 2.3a  PDB: E:18-53             -------------------Exon 2.5   --------------------------------------------------Exon 2.8  PDB: E:134-171              ------------------------------------------------------------------------------Exon 2.12  PDB: E:250-280 (gaps----------------------------------------------------------------Exon 2.15  PDB: E:345-370 -------------Exon 2.17  PDB: E:384-413     ------------------------------Exon 2.19  PDB: E:444-482              ----------------Exon 2.21b  PDB: E:499-534           Transcript 2 (2)
                 1r4n E   6 KLLKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQSY--------DHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILK-----PEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQTSATFQL 534
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195   |     -  |    215       225       235       245       | -   |   265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525         
                                                                                                                                                                                                                           199      208                                          253   259

Chain F from PDB  Type:PROTEIN  Length:418
 aligned with UBA3_HUMAN | Q8TBC4 from UniProtKB/Swiss-Prot  Length:463

    Alignment length:430
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462
           UBA3_HUMAN    33 DWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFT 462
               SCOP domains d1r4nf_ F: UBA3                                                                                                                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1r4nF01 F:12-209,F:289-339 NAD(P)-binding Rossmann-like Domain                                                                                                                                        --1r4nF02 F:212-288 Ubiquitin activating enzymes (Uba3). Chain: B, domain 2    1r4nF01 F:12-209,F:289-339                         1r4nF03 F:340-602                                           ------       ---------- ------------------ CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhh..............hhhhhhhhhh.eeee...hhhhhhhhhhhhh...eeeee.....hhhhh......hhhhh..hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhh...eeee...hhhhhhhhhhhhhhh..ee..ee.hhhh..eeeeeee..eeeeeee..........hhhhh......hhhhhhh...hhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh........eeee.........................ee...........hhhhhhhh........eeee.----.eeeee..hhhhhh...-------..hhhhhh..-...ee...........ee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UBIQUITIN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 3 (1) Exon 3.3a  PDB: F:12-40      Exon 3.4a  PDB: F:41-67    Exon 3.5a  PDB: F:68-95     --------------------------Exon 3.7a       ---------------------Exon 3.9  PDB: F:159-210 UniProt: 180-231           Exon 3.10  PDB: F:211-245          -------------------------------------Exon 3.12          -----------Exon 3.14  PDB: F:313-340   Exon 3.15  PDB: F:341-374         ---------------------Exon 3.17          --------------------------- Transcript 3 (1)
           Transcript 3 (2) -----------------------------------------------------------------------------------Exon 3.6  PDB: F:95-122     --------------Exon 3.8              --------------------------------------------------------------------------------------Exon 3.11a  PDB: F:245-283             -----------------Exon 3.13    ------------------------------------------------------------Exon 3.16             ------------------Exon 3.18b UniProt: 435-463  Transcript 3 (2)
                 1r4n F  12 DWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITAT----NRTLYLQSVTSIEERTR-------KELGLVDGQE-AVADVTTPQTVLFKLHFT 917
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381  |    391    || 604   |     - |     801| |    907       917
                                                                                                                                                                                                                                                                                                                                                                                                              384  389    396|     608     700   706| | |                 
                                                                                                                                                                                                                                                                                                                                                                                                                           600                    800 | |                 
                                                                                                                                                                                                                                                                                                                                                                                                                                                    802 |                 
                                                                                                                                                                                                                                                                                                                                                                                                                                                      900

Chain G from PDB  Type:PROTEIN  Length:516
 aligned with ULA1_HUMAN | Q13564 from UniProtKB/Swiss-Prot  Length:534

    Alignment length:529
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525         
           ULA1_HUMAN     6 KLLKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQTSATFQL 534
               SCOP domains d1r4ng_ G: Amyloid beta precursor protein-binding protein 1, APPBP1                                                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1r4nG01 G:6-178,G:388-534 NAD(P)-binding Rossmann-like Domain                                                                                                                -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1r4nG01 G:6-178,G:388-534 NAD(P)-binding Rossmann-like Domain                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh...eee...hhhhhhhhhhhhh....eeeee.....hhhhhh.....hhhhh..hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhh...eeeeeee..eeeeeee...eee.................hhhhhhhhhh.--------.....hhhhhhhhhhhhhhhh.........hhhhhhhhhhhh....-----...hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhheee...hhhhhhh....hhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh........eeee....eeee... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------F------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.1a    ----------------------------------Exon 2.4  PDB: G:53-7----------Exon 2.6  PDB: G:84-107 Exon 2.7  PDB: G:108-134   ------------------------------------Exon 2.9  PDB: G:171-199 [INCOMPLETE]Exon 2.10            Exon 2.11             ------------------------------Exon 2.13           Exon 2.14  PDB: G:301-345 UniProt: 301-345   -------------------------Exon 2.16     ----------------------------Exon 2.18  PDB: G:413-444       -------------------------------------Exon 2.20         ----------------------------------- Transcript 2 (1)
           Transcript 2 (2) ------------Exon 2.3a  PDB: G:18-53             -------------------Exon 2.5   --------------------------------------------------Exon 2.8  PDB: G:134-171              ------------------------------------------------------------------------------Exon 2.12  PDB: G:250-280 (gaps----------------------------------------------------------------Exon 2.15  PDB: G:345-370 -------------Exon 2.17  PDB: G:384-413     ------------------------------Exon 2.19  PDB: G:444-482              ----------------Exon 2.21b  PDB: G:499-534           Transcript 2 (2)
                 1r4n G   6 KLLKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQSY--------DHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILK-----PEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQTSATFQL 534
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195   |     -  |    215       225       235       245       | -   |   265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525         
                                                                                                                                                                                                                           199      208                                          253   259

Chain H from PDB  Type:PROTEIN  Length:418
 aligned with UBA3_HUMAN | Q8TBC4 from UniProtKB/Swiss-Prot  Length:463

    Alignment length:430
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462
           UBA3_HUMAN    33 DWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFT 462
               SCOP domains d1r4nh_ H: UBA3                                                                                                                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1r4nH01 H:12-209,H:289-339 NAD(P)-binding Rossmann-like Domain                                                                                                                                        --1r4nH02 H:212-288 Ubiquitin activating enzymes (Uba3). Chain: B, domain 2    1r4nH01 H:12-209,H:289-339                         1r4nH03 H:340-602                                           ------       ---------- ------------------ CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhh..............hhhhhhhhhh.eeee...hhhhhhhhhhhhh...eeeee.....hhhhh......hhhhh..hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhh...eeee...hhhhhhhhhhhhhhh..ee..ee.hhhh..eeeeeee..eeeeeee..........hhhhh......hhhhhhh...hhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh........eeee.........................ee...........hhhhhhhh........eeee.----.eeeee..hhhhhh...-------..hhhhhh..-...ee...........ee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UBIQUITIN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 3 (1) Exon 3.3a  PDB: H:12-40      Exon 3.4a  PDB: H:41-67    Exon 3.5a  PDB: H:68-95     --------------------------Exon 3.7a       ---------------------Exon 3.9  PDB: H:159-210 UniProt: 180-231           Exon 3.10  PDB: H:211-245          -------------------------------------Exon 3.12          -----------Exon 3.14  PDB: H:313-340   Exon 3.15  PDB: H:341-374         ---------------------Exon 3.17          --------------------------- Transcript 3 (1)
           Transcript 3 (2) -----------------------------------------------------------------------------------Exon 3.6  PDB: H:95-122     --------------Exon 3.8              --------------------------------------------------------------------------------------Exon 3.11a  PDB: H:245-283             -----------------Exon 3.13    ------------------------------------------------------------Exon 3.16             ------------------Exon 3.18b UniProt: 435-463  Transcript 3 (2)
                 1r4n H  12 DWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITAT----NRTLYLQSVTSIEERTR-------KELGLVDGQE-AVADVTTPQTVLFKLHFT 917
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381  |    391    || 604   |     - |     801| |    907       917
                                                                                                                                                                                                                                                                                                                                                                                                              384  389    396|     608     700   706| | |                 
                                                                                                                                                                                                                                                                                                                                                                                                                           600                    800 | |                 
                                                                                                                                                                                                                                                                                                                                                                                                                                                    802 |                 
                                                                                                                                                                                                                                                                                                                                                                                                                                                      900

Chain I from PDB  Type:PROTEIN  Length:76
 aligned with NEDD8_HUMAN | Q15843 from UniProtKB/Swiss-Prot  Length:81

    Alignment length:76
                                    10        20        30        40        50        60        70      
          NEDD8_HUMAN     1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG  76
               SCOP domains d1r4ni_ I: Nedd8                                                             SCOP domains
               CATH domains 1r4nI00 I:101-176                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee......eeee.....hhhhhhhhhhhhhh.hhhhh.eee..ee......hhhhh.....eeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: I:101-176 UniProt: 1-76                                    PROSITE (1)
                PROSITE (2) --------------------------UBIQUITIN_1  PDB: I:127-15------------------------ PROSITE (2)
           Transcript 1 (1) 1.1a  Exon 1.4        Exon 1.5a  PDB: I:123-150   -------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------Exon 1.6e  PDB: I:150-176   Transcript 1 (2)
                 1r4n I 101 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 176
                                   110       120       130       140       150       160       170

Chain J from PDB  Type:PROTEIN  Length:76
 aligned with NEDD8_HUMAN | Q15843 from UniProtKB/Swiss-Prot  Length:81

    Alignment length:76
                                    10        20        30        40        50        60        70      
          NEDD8_HUMAN     1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG  76
               SCOP domains d1r4nj_ J: Nedd8                                                             SCOP domains
               CATH domains 1r4nJ00 J:101-176                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee......eeee.....hhhhhhhhhhhhhh.hhhhh.ee..........hhhhhh.....eeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: J:101-176 UniProt: 1-76                                    PROSITE (1)
                PROSITE (2) --------------------------UBIQUITIN_1  PDB: J:127-15------------------------ PROSITE (2)
           Transcript 1 (1) 1.1a  Exon 1.4        Exon 1.5a  PDB: J:123-150   -------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------Exon 1.6e  PDB: J:150-176   Transcript 1 (2)
                 1r4n J 101 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 176
                                   110       120       130       140       150       160       170

Chain K from PDB  Type:PROTEIN  Length:76
 aligned with NEDD8_HUMAN | Q15843 from UniProtKB/Swiss-Prot  Length:81

    Alignment length:76
                                    10        20        30        40        50        60        70      
          NEDD8_HUMAN     1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG  76
               SCOP domains d1r4nk_ K: Nedd8                                                             SCOP domains
               CATH domains 1r4nK00 K:101-176                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee......eeee.....hhhhhhhhhhhhhh.hhhhh.ee..........hhhhhh.....eeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: K:101-176 UniProt: 1-76                                    PROSITE (1)
                PROSITE (2) --------------------------UBIQUITIN_1  PDB: K:127-15------------------------ PROSITE (2)
           Transcript 1 (1) 1.1a  Exon 1.4        Exon 1.5a  PDB: K:123-150   -------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------Exon 1.6e  PDB: K:150-176   Transcript 1 (2)
                 1r4n K 101 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 176
                                   110       120       130       140       150       160       170

Chain L from PDB  Type:PROTEIN  Length:76
 aligned with NEDD8_HUMAN | Q15843 from UniProtKB/Swiss-Prot  Length:81

    Alignment length:76
                                    10        20        30        40        50        60        70      
          NEDD8_HUMAN     1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG  76
               SCOP domains d1r4nl_ L: Nedd8                                                             SCOP domains
               CATH domains 1r4nL00 L:101-176                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee......eeee.....hhhhhhhhhhhhhh.hhhhh.eee..ee.....hhhhhh.....eeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: L:101-176 UniProt: 1-76                                    PROSITE (1)
                PROSITE (2) --------------------------UBIQUITIN_1  PDB: L:127-15------------------------ PROSITE (2)
           Transcript 1 (1) 1.1a  Exon 1.4        Exon 1.5a  PDB: L:123-150   -------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------Exon 1.6e  PDB: L:150-176   Transcript 1 (2)
                 1r4n L 101 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 176
                                   110       120       130       140       150       160       170

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit(hide GO term definitions)

Chain A,C,E,G (ULA1_HUMAN | Q13564)

molecular function
	GO:0019781	NEDD8 activating enzyme activity	Catalysis of the initiation of the NEDD8 (RUB1) conjugation cascade.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0046982	protein heterodimerization activity	Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
	GO:0008641	small protein activating enzyme activity	Catalysis of the activation of small proteins, such as ubiquitin or ubiquitin-like proteins, through the formation of an ATP-dependent high-energy thiolester bond.
	GO:0031625	ubiquitin protein ligase binding	Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
biological process
	GO:0006915	apoptotic process	A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
	GO:0007049	cell cycle	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
	GO:0033314	mitotic DNA replication checkpoint	A cell cycle checkpoint that acts during a mitotic cell cycle and prevents the initiation of mitosis until DNA replication is complete, thereby ensuring that progeny inherit a full complement of the genome.
	GO:0051402	neuron apoptotic process	Any apoptotic process in a neuron, the basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system.
	GO:0045116	protein neddylation	Covalent attachment of the ubiquitin-like protein NEDD8 (RUB1) to another protein.
	GO:0042981	regulation of apoptotic process	Any process that modulates the occurrence or rate of cell death by apoptotic process.
	GO:0043523	regulation of neuron apoptotic process	Any process that modulates the occurrence or rate of cell death by apoptotic process in neurons.
	GO:0007165	signal transduction	The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain B,D,F,H (UBA3_HUMAN | Q8TBC4)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0019781	NEDD8 activating enzyme activity	Catalysis of the initiation of the NEDD8 (RUB1) conjugation cascade.
	GO:0016881	acid-amino acid ligase activity	Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
	GO:0016922	ligand-dependent nuclear receptor binding	Interacting selectively and non-covalently, in a ligand dependent manner, with a nuclear receptor protein.
	GO:0016874	ligase activity	Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0046982	protein heterodimerization activity	Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
	GO:0008641	small protein activating enzyme activity	Catalysis of the activation of small proteins, such as ubiquitin or ubiquitin-like proteins, through the formation of an ATP-dependent high-energy thiolester bond.
biological process
	GO:0038061	NIK/NF-kappaB signaling	The process in which a signal is passed on to downstream components within the cell through the NIK-dependent processing and activation of NF-KappaB. Begins with activation of the NF-KappaB-inducing kinase (NIK), which in turn phosphorylates and activates IkappaB kinase alpha (IKKalpha). IKKalpha phosphorylates the NF-Kappa B2 protein (p100) leading to p100 processing and release of an active NF-KappaB (p52).
	GO:0007049	cell cycle	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
	GO:0006464	cellular protein modification process	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
	GO:0007113	endomitotic cell cycle	A mitotic cell cycle in which chromosomes are replicated and sister chromatids separate, but spindle formation, nuclear membrane breakdown and nuclear division do not occur, resulting in an increased number of chromosomes in the cell.
	GO:0000278	mitotic cell cycle	Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent.
	GO:0045892	negative regulation of transcription, DNA-templated	Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0045116	protein neddylation	Covalent attachment of the ubiquitin-like protein NEDD8 (RUB1) to another protein.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0051726	regulation of cell cycle	Any process that modulates the rate or extent of progression through the cell cycle.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain I,J,K,L (NEDD8_HUMAN | Q15843)

molecular function
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0031625	ubiquitin protein ligase binding	Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
biological process
	GO:0009653	anatomical structure morphogenesis	The process in which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form.
	GO:0006464	cellular protein modification process	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
	GO:0008104	protein localization	Any process in which a protein is transported to, or maintained in, a specific location.
	GO:0045116	protein neddylation	Covalent attachment of the ubiquitin-like protein NEDD8 (RUB1) to another protein.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0006357	regulation of transcription from RNA polymerase II promoter	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
	GO:0014070	response to organic cyclic compound	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus.
	GO:0007179	transforming growth factor beta receptor signaling pathway	A series of molecular signals initiated by the binding of an extracellular ligand to a transforming growth factor beta receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.
	GO:0006511	ubiquitin-dependent protein catabolic process	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

SS Bonds (8, 8)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 4)

PROSITE Motifs (3, 12)

Exons (40, 160)

Sequences/Alignments

Classification and Annotation

SCOP Domains (3, 12)

CATH Domains (4, 20)

Pfam Domains (0, 0)

Gene Ontology (37, 52)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File