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(-) Description

Title :  1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE FROM ZYMOMONAS MOBILIS IN COMPLEX WITH NADPH
 
Authors :  S. Ricagno, S. Grolle, S. Bringer-Meyer, H. Sahm, Y. Lindqvist, G. Schneider
Date :  22 Sep 03  (Deposition) - 13 Jul 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Reductoisomerase, Nadph Complex, Fosmidomycin, Non- Mevalonate Pathway, Zymomonas Mobilis, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Ricagno, S. Grolle, S. Bringer-Meyer, H. Sahm, Y. Lindqvist, G. Schneider
Crystal Structure Of 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase From Zymomonas Mobilis At 1. 9-A Resolution.
Biochim. Biophys. Acta V. 1698 37 2004
PubMed-ID: 15063313  |  Reference-DOI: 10.1016/J.BBAPAP.2003.10.006
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE
    Chains: A, B, C, D
    EC Number: 1.1.1.267
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Strain: M15 [PREP4]
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: DXR
    Organism Scientific: ZYMOMONAS MOBILIS
    Organism Taxid: 542
    Synonym: DXP REDUCTOISOMERASE, 1-DEOXYXYLULOSE-5-PHOSPHATE REDUCTOISOMERASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1NDP4Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:11 , THR A:13 , GLY A:14 , ASN A:39 , ARG A:40 , ASN A:41 , ILE A:101 , ALA A:105 , HOH A:430BINDING SITE FOR RESIDUE NDP A 400
2AC2SOFTWAREGLY B:11 , ALA B:12 , THR B:13 , GLY B:14 , ASN B:39 , ARG B:40 , ASN B:41 , ALA B:60 , ILE B:101BINDING SITE FOR RESIDUE NDP B 401
3AC3SOFTWAREGLY C:11 , THR C:13 , GLY C:14 , ALA C:38 , ASN C:39 , ARG C:40 , ASN C:41 , ILE C:101 , ALA C:105 , HOH C:424BINDING SITE FOR RESIDUE NDP C 402
4AC4SOFTWAREGLY D:11 , THR D:13 , GLY D:14 , ALA D:38 , ASN D:39 , ARG D:40 , ASN D:41 , ALA D:60 , LEU D:86 , ILE D:102 , ALA D:105 , HOH D:423BINDING SITE FOR RESIDUE NDP D 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1R0L)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Trp A:276 -Pro A:277
2Trp B:276 -Pro B:277
3Trp C:276 -Pro C:277
4Trp D:276 -Pro D:277

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1R0L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1R0L)

(-) Exons   (0, 0)

(no "Exon" information available for 1R0L)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:378
 aligned with DXR_ZYMMO | Q9X5F2 from UniProtKB/Swiss-Prot  Length:388

    Alignment length:384
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382    
            DXR_ZYMMO     3 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSLAEMATVTPERAVQHPNWSMGAKISIDSATMMNKGLELIEAYHLFQIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSPDMRTPIGHTLAWPKRMETPAESLDFTKLRQMDFEAPDYERFPALTLAMESIKSGGARPAVMNAANEIAVAAFLDKKIGFLDIAKIVEKTLDHYTPATPSSLEDVFAIDNEARIQAAALMESL 386
               SCOP domains d1r0la2 A:3-126,A:265-290 1-deoxy-D-xylulose-5-phosphate reductoisomerase                                                   d1r0la3 A:127-264 1-deoxy-D-xylulose-5-phosphate reductoisomerase                                                                         d1r0la2 A:3-126,A:265-290 d1r0la1 A:291-385 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain           - SCOP domains
               CATH domains 1r0lA01 A:3-150 NAD(P)-binding Rossmann-like Domain                                                                                                 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee...hhhhhhhhhhhhhh...eeeeeeee..hhhhhhhhhhhhh..eeee.hhhhhhhhhhhh.....eeeehhhhhhhhh.....eeee..hhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhh.eeee.hhhhhhhhhhh...hhh.eeeeeeee........hhhhhhhhhhhhhh.------..hhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeee.....eeeeeee....eeeee....hhhhhhhhhhh...........hhhhhheee.........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1r0l A   3 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSLAEMATVTPERAVQ------GAKISIDSATMMNKGLELIEAFHLFQIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSPDMRTPIGHTLAWPKRMETPAESLDFTKLRQMDFEAPDYERFPALTLAMESIKSGGARPAVMNAANEIAVAAFLDKKIGFLDIAKIVEKTLDHYTPATPSSLEDVFAIDNEARIQAAALMESL 386
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192     |   -  |    212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382    
                                                                                                                                                                                                                             198    205                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:379
 aligned with DXR_ZYMMO | Q9X5F2 from UniProtKB/Swiss-Prot  Length:388

    Alignment length:384
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382    
            DXR_ZYMMO     3 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSLAEMATVTPERAVQHPNWSMGAKISIDSATMMNKGLELIEAYHLFQIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSPDMRTPIGHTLAWPKRMETPAESLDFTKLRQMDFEAPDYERFPALTLAMESIKSGGARPAVMNAANEIAVAAFLDKKIGFLDIAKIVEKTLDHYTPATPSSLEDVFAIDNEARIQAAALMESL 386
               SCOP domains d1r0lb2 B:3-126,B:265-290 1-deoxy-D-xylulose-5-phosphate reductoisomerase                                                   d1r0lb3 B:127-264 1-deoxy-D-xylulose-5-phosphate reductoisomerase                                                                         d1r0lb2 B:3-126,B:265-290 d1r0lb1 B:291-385 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain           - SCOP domains
               CATH domains 1r0lB01 B:3-150 NAD(P)-binding Rossmann-like Domain                                                                                                 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee...hhhhhhhhhhhhhh...eeeeeeee..hhhhhhhhhhhhh..eeee.hhhhhhhhhhhh.....eeeehhhhhhhhhh....eeee...hhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhh.eeee.hhhhhhhhhhh...hhh.eeeeeeee........hhhhhh..hhhhhhh..-----.hhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeee.....eeeeeee....eeeee....hhhhhhhhhhh...........hhhhhheee.........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1r0l B   3 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSLAEMATVTPERAVQHP-----AKISIDSATMMNKGLELIEAFHLFQIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSPDMRTPIGHTLAWPKRMETPAESLDFTKLRQMDFEAPDYERFPALTLAMESIKSGGARPAVMNAANEIAVAAFLDKKIGFLDIAKIVEKTLDHYTPATPSSLEDVFAIDNEARIQAAALMESL 386
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       | -   |   212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382    
                                                                                                                                                                                                                               200   206                                                                                                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:378
 aligned with DXR_ZYMMO | Q9X5F2 from UniProtKB/Swiss-Prot  Length:388

    Alignment length:386
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380      
            DXR_ZYMMO     1 MSQPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSLAEMATVTPERAVQHPNWSMGAKISIDSATMMNKGLELIEAYHLFQIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSPDMRTPIGHTLAWPKRMETPAESLDFTKLRQMDFEAPDYERFPALTLAMESIKSGGARPAVMNAANEIAVAAFLDKKIGFLDIAKIVEKTLDHYTPATPSSLEDVFAIDNEARIQAAALMESL 386
               SCOP domains --d1r0lc2 C:3-126,C:265-290 1-deoxy-D-xylulose-5-phosphate reductoisomerase                                                   d1r0lc3 C:127-264 1-deoxy-D-xylulose-5-phosphate reductoisomerase                                                                         d1r0lc2 C:3-126,C:265-290 d1r0lc1 C:291-385 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain           - SCOP domains
               CATH domains 1r0lC01 C:1-150 NAD(P)-binding Rossmann-like Domain                                                                                                   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee...hhhhhhhhhhhhh....eeeeeeee..hhhhhhhhhhhhh..eeee.hhhhhhhhhhhh.....eeeehhhhhhhhhh....eeee...hhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhh.eeee.hhhhhhhhhhh...hhh.eeeeeeee........hhhhhh........--------hhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeee.....eeeeeee....eeeee....hhhhhhhhhhh...........hhhhhheee.........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1r0l C   1 MSQPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSLAEMATVTPERAV--------AKISIDSATMMNKGLELIEAFHLFQIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSPDMRTPIGHTLAWPKRMETPAESLDFTKLRQMDFEAPDYERFPALTLAMESIKSGGARPAVMNAANEIAVAAFLDKKIGFLDIAKIVEKTLDHYTPATPSSLEDVFAIDNEARIQAAALMESL 386
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190      |  -     | 210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380      
                                                                                                                                                                                                                              197      206                                                                                                                                                                                    


Chain D from PDB  Type:PROTEIN  Length:378
 aligned with DXR_ZYMMO | Q9X5F2 from UniProtKB/Swiss-Prot  Length:388

    Alignment length:384
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382    
            DXR_ZYMMO     3 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSLAEMATVTPERAVQHPNWSMGAKISIDSATMMNKGLELIEAYHLFQIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSPDMRTPIGHTLAWPKRMETPAESLDFTKLRQMDFEAPDYERFPALTLAMESIKSGGARPAVMNAANEIAVAAFLDKKIGFLDIAKIVEKTLDHYTPATPSSLEDVFAIDNEARIQAAALMESL 386
               SCOP domains d1r0ld2 D:3-126,D:265-290 1-deoxy-D-xylulose-5-phosphate reductoisomerase                                                   d1r0ld3 D:127-264 1-deoxy-D-xylulose-5-phosphate reductoisomerase                                                                         d1r0ld2 D:3-126,D:265-290 d1r0ld1 D:291-385 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain           - SCOP domains
               CATH domains 1r0lD01 D:3-150 NAD(P)-binding Rossmann-like Domain                                                                                                 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----DXP_reductoisom-1r0lD05 D:7-132                                                                                               -------------DXP_redisom_C-1r0lD01 D:146-229                                                     -------------------------------DXPR_C-1r0lD09 D:261-379                                                                                               ------- Pfam domains (1)
           Pfam domains (2) ----DXP_reductoisom-1r0lD06 D:7-132                                                                                               -------------DXP_redisom_C-1r0lD02 D:146-229                                                     -------------------------------DXPR_C-1r0lD10 D:261-379                                                                                               ------- Pfam domains (2)
           Pfam domains (3) ----DXP_reductoisom-1r0lD07 D:7-132                                                                                               -------------DXP_redisom_C-1r0lD03 D:146-229                                                     -------------------------------DXPR_C-1r0lD11 D:261-379                                                                                               ------- Pfam domains (3)
           Pfam domains (4) ----DXP_reductoisom-1r0lD08 D:7-132                                                                                               -------------DXP_redisom_C-1r0lD04 D:146-229                                                     -------------------------------DXPR_C-1r0lD12 D:261-379                                                                                               ------- Pfam domains (4)
         Sec.struct. author ..eeeeee...hhhhhhhhhhhhhh...eeeeeeee..hhhhhhhhhhhhh..eeee.hhhhhhhhhhhh.....eeeehhhhhhhhhh....eeee...hhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhh.eeee.hhhhhhhhhhh...hhh.eeeeeeee........hhhhhh..hhhhhh..------hhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeee.....eeeeeee....eeeee....hhhhhhhhhhh...........hhhhhheee.........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1r0l D   3 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSLAEMATVTPERAVQH------AKISIDSATMMNKGLELIEAFHLFQIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSPDMRTPIGHTLAWPKRMETPAESLDFTKLRQMDFEAPDYERFPALTLAMESIKSGGARPAVMNAANEIAVAAFLDKKIGFLDIAKIVEKTLDHYTPATPSSLEDVFAIDNEARIQAAALMESL 386
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192      |  -   |   212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382    
                                                                                                                                                                                                                              199    206
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 12)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (3, 12)

Asymmetric Unit
(-)
Clan: NADP_Rossmann (1239)
(-)
Clan: no clan defined [family: DXPR_C] (19)
(-)
Family: DXPR_C (19)
(-)
Zymomonas mobilis (2)
3aDXPR_C-1r0lD09D:261-379
3bDXPR_C-1r0lD10D:261-379
3cDXPR_C-1r0lD11D:261-379
3dDXPR_C-1r0lD12D:261-379

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (DXR_ZYMMO | Q9X5F2)
molecular function
    GO:0030604    1-deoxy-D-xylulose-5-phosphate reductoisomerase activity    Catalysis of the reaction: 2-C-methyl-D-erythritol 4-phosphate + NADP(+) = 1-deoxy-D-xylulose 5-phosphate + H(+) + NADPH.
    GO:0070402    NADPH binding    Interacting selectively and non-covalently with the reduced form, NADPH, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0019288    isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway    The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate.
    GO:0008299    isoprenoid biosynthetic process    The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0016114    terpenoid biosynthetic process    The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure.

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  1r0l
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  DXR_ZYMMO | Q9X5F2
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    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  1.1.1.267
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
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  (no 'MIM ID' available)
    Disease Information: OMIM
 
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    Age Related Information: GenAge

(-) Analysis Tools

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    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
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Access by UniProt ID/Accession number
  DXR_ZYMMO | Q9X5F2
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DXR_ZYMMO | Q9X5F2: 1r0k

(-) Related Entries Specified in the PDB File

1r0k SAME PROTEIN AS APOENZYME