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1R0L
Asym. Unit
Info
Asym.Unit (241 KB)
Biol.Unit 1 (121 KB)
Biol.Unit 2 (119 KB)
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(1)
Title
:
1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE FROM ZYMOMONAS MOBILIS IN COMPLEX WITH NADPH
Authors
:
S. Ricagno, S. Grolle, S. Bringer-Meyer, H. Sahm, Y. Lindqvist, G. Schneider
Date
:
22 Sep 03 (Deposition) - 13 Jul 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Reductoisomerase, Nadph Complex, Fosmidomycin, Non- Mevalonate Pathway, Zymomonas Mobilis, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Ricagno, S. Grolle, S. Bringer-Meyer, H. Sahm, Y. Lindqvist, G. Schneider
Crystal Structure Of 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase From Zymomonas Mobilis At 1. 9-A Resolution.
Biochim. Biophys. Acta V. 1698 37 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
1b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
1c: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPc)
1d: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NDP
4
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:11 , THR A:13 , GLY A:14 , ASN A:39 , ARG A:40 , ASN A:41 , ILE A:101 , ALA A:105 , HOH A:430
BINDING SITE FOR RESIDUE NDP A 400
2
AC2
SOFTWARE
GLY B:11 , ALA B:12 , THR B:13 , GLY B:14 , ASN B:39 , ARG B:40 , ASN B:41 , ALA B:60 , ILE B:101
BINDING SITE FOR RESIDUE NDP B 401
3
AC3
SOFTWARE
GLY C:11 , THR C:13 , GLY C:14 , ALA C:38 , ASN C:39 , ARG C:40 , ASN C:41 , ILE C:101 , ALA C:105 , HOH C:424
BINDING SITE FOR RESIDUE NDP C 402
4
AC4
SOFTWARE
GLY D:11 , THR D:13 , GLY D:14 , ALA D:38 , ASN D:39 , ARG D:40 , ASN D:41 , ALA D:60 , LEU D:86 , ILE D:102 , ALA D:105 , HOH D:423
BINDING SITE FOR RESIDUE NDP D 403
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d1r0la1 (A:291-385)
1b: SCOP_d1r0lb1 (B:291-385)
1c: SCOP_d1r0lc1 (C:291-385)
1d: SCOP_d1r0ld1 (D:291-385)
2a: SCOP_d1r0la3 (A:127-264)
2b: SCOP_d1r0lb3 (B:127-264)
2c: SCOP_d1r0lc3 (C:127-264)
2d: SCOP_d1r0ld3 (D:127-264)
3a: SCOP_d1r0la2 (A:3-126,A:265-290)
3b: SCOP_d1r0lb2 (B:3-126,B:265-290)
3c: SCOP_d1r0lc2 (C:3-126,C:265-290)
3d: SCOP_d1r0ld2 (D:3-126,D:265-290)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Left-handed superhelix
(73)
Superfamily
:
1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
(13)
Family
:
1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
(13)
Protein domain
:
1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
(13)
Zymomonas mobilis [TaxId: 542]
(2)
1a
d1r0la1
A:291-385
1b
d1r0lb1
B:291-385
1c
d1r0lc1
C:291-385
1d
d1r0ld1
D:291-385
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FwdE/GAPDH domain-like
(188)
Superfamily
:
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
(179)
Family
:
Dihydrodipicolinate reductase-like
(45)
Protein domain
:
1-deoxy-D-xylulose-5-phosphate reductoisomerase
(13)
Zymomonas mobilis [TaxId: 542]
(2)
2a
d1r0la3
A:127-264
2b
d1r0lb3
B:127-264
2c
d1r0lc3
C:127-264
2d
d1r0ld3
D:127-264
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
(179)
Protein domain
:
1-deoxy-D-xylulose-5-phosphate reductoisomerase
(13)
Zymomonas mobilis [TaxId: 542]
(2)
3a
d1r0la2
A:3-126,A:265-290
3b
d1r0lb2
B:3-126,B:265-290
3c
d1r0lc2
C:3-126,C:265-290
3d
d1r0ld2
D:3-126,D:265-290
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1r0lC01 (C:1-150)
1b: CATH_1r0lA01 (A:3-150)
1c: CATH_1r0lB01 (B:3-150)
1d: CATH_1r0lD01 (D:3-150)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Zymomonas mobilis. Organism_taxid: 542.
(3)
1a
1r0lC01
C:1-150
1b
1r0lA01
A:3-150
1c
1r0lB01
B:3-150
1d
1r0lD01
D:3-150
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Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_DXP_redisom_C_1r0lD01 (D:146-229)
1b: PFAM_DXP_redisom_C_1r0lD02 (D:146-229)
1c: PFAM_DXP_redisom_C_1r0lD03 (D:146-229)
1d: PFAM_DXP_redisom_C_1r0lD04 (D:146-229)
2a: PFAM_DXP_reductoisom_1r0lD05 (D:7-132)
2b: PFAM_DXP_reductoisom_1r0lD06 (D:7-132)
2c: PFAM_DXP_reductoisom_1r0lD07 (D:7-132)
2d: PFAM_DXP_reductoisom_1r0lD08 (D:7-132)
3a: PFAM_DXPR_C_1r0lD09 (D:261-379)
3b: PFAM_DXPR_C_1r0lD10 (D:261-379)
3c: PFAM_DXPR_C_1r0lD11 (D:261-379)
3d: PFAM_DXPR_C_1r0lD12 (D:261-379)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
DXP_redisom_C
(19)
Zymomonas mobilis
(2)
1a
DXP_redisom_C-1r0lD01
D:146-229
1b
DXP_redisom_C-1r0lD02
D:146-229
1c
DXP_redisom_C-1r0lD03
D:146-229
1d
DXP_redisom_C-1r0lD04
D:146-229
Family
:
DXP_reductoisom
(19)
Zymomonas mobilis
(2)
2a
DXP_reductoisom-1r0lD05
D:7-132
2b
DXP_reductoisom-1r0lD06
D:7-132
2c
DXP_reductoisom-1r0lD07
D:7-132
2d
DXP_reductoisom-1r0lD08
D:7-132
Clan
:
no clan defined [family: DXPR_C]
(19)
Family
:
DXPR_C
(19)
Zymomonas mobilis
(2)
3a
DXPR_C-1r0lD09
D:261-379
3b
DXPR_C-1r0lD10
D:261-379
3c
DXPR_C-1r0lD11
D:261-379
3d
DXPR_C-1r0lD12
D:261-379
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Asym.Unit (241 KB)
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Header - Biol.Unit 1
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