Chain A from PDB Type:PROTEIN Length:380
aligned with DXR_ZYMMO | Q9X5F2 from UniProtKB/Swiss-Prot Length:388
Alignment length:386
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291 301 311 321 331 341 351 361 371 381
DXR_ZYMMO 2 SQPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSLAEMATVTPERAVQHPNWSMGAKISIDSATMMNKGLELIEAYHLFQIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSPDMRTPIGHTLAWPKRMETPAESLDFTKLRQMDFEAPDYERFPALTLAMESIKSGGARPAVMNAANEIAVAAFLDKKIGFLDIAKIVEKTLDHYTPATPSSLEDVFAIDNEARIQAAALMESLP 387
SCOP domains -d1r0ka2 A:3-126,A:265-290 1-deoxy-D-xylulose-5-phosphate reductoisomerase d1r0ka3 A:127-264 1-deoxy-D-xylulose-5-phosphate reductoisomerase d1r0ka2 A:3-126,A:265-290 d1r0ka1 A:291-385 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain -- SCOP domains
CATH domains 1r0kA01 A:2-150 NAD(P)-binding Rossmann-like Domain --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...eeeeee...hhhhhhhhhhhhhh...eeeeeeee..hhhhhhhhhhhh...eeee.hhhhhhhhhhhh.....eeeehhhhhhhhhh....eeee...hhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhh.eeee.hhhhhhhhhhh...hhh.eeeeeeee........hhhhhh..hhhhhhh------hhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeee.....eeeeeee....eeeee....hhhhhhhhhhh...........hhhhhheee........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1r0k A 2 SQPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSLAEMATVTPERAVQ------GAKISIDSATMMNKGLELIEAFHLFQIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSPDMRTPIGHTLAWPKRMETPAESLDFTKLRQMDFEAPDYERFPALTLAMESIKSGGARPAVMNAANEIAVAAFLDKKIGFLDIAKIVEKTLDHYTPATPSSLEDVFAIDNEARIQAAALMESLP 387
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 | - | 211 221 231 241 251 261 271 281 291 301 311 321 331 341 351 361 371 381
198 205
Chain B from PDB Type:PROTEIN Length:382
aligned with DXR_ZYMMO | Q9X5F2 from UniProtKB/Swiss-Prot Length:388
Alignment length:384
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 222 232 242 252 262 272 282 292 302 312 322 332 342 352 362 372 382
DXR_ZYMMO 3 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSLAEMATVTPERAVQHPNWSMGAKISIDSATMMNKGLELIEAYHLFQIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSPDMRTPIGHTLAWPKRMETPAESLDFTKLRQMDFEAPDYERFPALTLAMESIKSGGARPAVMNAANEIAVAAFLDKKIGFLDIAKIVEKTLDHYTPATPSSLEDVFAIDNEARIQAAALMESL 386
SCOP domains d1r0kb2 B:3-126,B:265-290 1-deoxy-D-xylulose-5-phosphate reductoisomerase d1r0kb3 B:127-264 1-deoxy-D-xylulose-5-phosphate reductoisomerase d1r0kb2 B:3-126,B:265-290 d1r0kb1 B:291-385 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain - SCOP domains
CATH domains 1r0kB01 B:3-150 NAD(P)-binding Rossmann-like Domain -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ..eeeeee...hhhhhhhhhhhhh....eeeeeeee..hhhhhhhhhhhh...eeee.hhhhhhhhhhhhh....eeeehhhhhhhhhh....eeee...hhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhh.eeee.hhhhhhhhhhh...hhh.eeeeeeee........hhhhhh..hhhhhh...--..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeee.....eeeeeee....eeeee....hhhhhhhhhhh...........hhhhhheee.........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1r0k B 3 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSLAEMATVTPERAVQHP--SMGAKISIDSATMMNKGLELIEAFHLFQIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSPDMRTPIGHTLAWPKRMETPAESLDFTKLRQMDFEAPDYERFPALTLAMESIKSGGARPAVMNAANEIAVAAFLDKKIGFLDIAKIVEKTLDHYTPATPSSLEDVFAIDNEARIQAAALMESL 386
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 | -| 212 222 232 242 252 262 272 282 292 302 312 322 332 342 352 362 372 382
200 |
203
Chain C from PDB Type:PROTEIN Length:379
aligned with DXR_ZYMMO | Q9X5F2 from UniProtKB/Swiss-Prot Length:388
Alignment length:386
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 222 232 242 252 262 272 282 292 302 312 322 332 342 352 362 372 382
DXR_ZYMMO 3 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSLAEMATVTPERAVQHPNWSMGAKISIDSATMMNKGLELIEAYHLFQIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSPDMRTPIGHTLAWPKRMETPAESLDFTKLRQMDFEAPDYERFPALTLAMESIKSGGARPAVMNAANEIAVAAFLDKKIGFLDIAKIVEKTLDHYTPATPSSLEDVFAIDNEARIQAAALMESLPA 388
SCOP domains d1r0kc2 C:3-126,C:265-290 1-deoxy-D-xylulose-5-phosphate reductoisomerase d1r0kc3 C:127-264 1-deoxy-D-xylulose-5-phosphate reductoisomerase d1r0kc2 C:3-126,C:265-290 d1r0kc1 C:291-385 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain --- SCOP domains
CATH domains 1r0kC01 C:3-150 NAD(P)-binding Rossmann-like Domain ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeeeee...hhhhhhhhhhhhhh...eeeeeeee..hhhhhhhhhhhh...eeee.hhhhhhhhhhhh.....eeeehhhhhhhhhh....eeee...hhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhh.eeee.hhhhhhhhhhh...hhh.eeeeeeee........hhhhhh..hhhhhh-------hhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeee.....eeeeeee....eeeee....hhhhhhhhhhh...........hhhhhheee.........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1r0k C 3 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSLAEMATVTPERAV-------GAKISIDSATMMNKGLELIEAFHLFQIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSPDMRTPIGHTLAWPKRMETPAESLDFTKLRQMDFEAPDYERFPALTLAMESIKSGGARPAVMNAANEIAVAAFLDKKIGFLDIAKIVEKTLDHYTPATPSSLEDVFAIDNEARIQAAALMESLPA 388
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 | - | 212 222 232 242 252 262 272 282 292 302 312 322 332 342 352 362 372 382
197 205
Chain D from PDB Type:PROTEIN Length:380
aligned with DXR_ZYMMO | Q9X5F2 from UniProtKB/Swiss-Prot Length:388
Alignment length:383
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 222 232 242 252 262 272 282 292 302 312 322 332 342 352 362 372 382
DXR_ZYMMO 3 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSLAEMATVTPERAVQHPNWSMGAKISIDSATMMNKGLELIEAYHLFQIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSPDMRTPIGHTLAWPKRMETPAESLDFTKLRQMDFEAPDYERFPALTLAMESIKSGGARPAVMNAANEIAVAAFLDKKIGFLDIAKIVEKTLDHYTPATPSSLEDVFAIDNEARIQAAALMES 385
SCOP domains d1r0kd2 D:3-126,D:265-290 1-deoxy-D-xylulose-5-phosphate reductoisomerase d1r0kd3 D:127-264 1-deoxy-D-xylulose-5-phosphate reductoisomerase d1r0kd2 D:3-126,D:265-290 d1r0kd1 D:291-385 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain SCOP domains
CATH domains 1r0kD01 D:3-150 NAD(P)-binding Rossmann-like Domain ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains (1) ----DXP_reductoisom-1r0kD05 D:7-132 -------------DXP_redisom_C-1r0kD01 D:146-229 -------------------------------DXPR_C-1r0kD09 D:261-379 ------ Pfam domains (1)
Pfam domains (2) ----DXP_reductoisom-1r0kD06 D:7-132 -------------DXP_redisom_C-1r0kD02 D:146-229 -------------------------------DXPR_C-1r0kD10 D:261-379 ------ Pfam domains (2)
Pfam domains (3) ----DXP_reductoisom-1r0kD07 D:7-132 -------------DXP_redisom_C-1r0kD03 D:146-229 -------------------------------DXPR_C-1r0kD11 D:261-379 ------ Pfam domains (3)
Pfam domains (4) ----DXP_reductoisom-1r0kD08 D:7-132 -------------DXP_redisom_C-1r0kD04 D:146-229 -------------------------------DXPR_C-1r0kD12 D:261-379 ------ Pfam domains (4)
Sec.struct. author ..eeeeee...hhhhhhhhhhhhhh...eeeeeeee..hhhhhhhhhhhh...eeee.hhhhhhhhhhhh.....eeeehhhhhhhhhh....eeee...hhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhh.eeee.hhhhhhhhhhh...hhh.eeeeeeee........hhhhhh..hhhhhh...---.hhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeee.....eeeeeee....eeeee....hhhhhhhhhhh...........hhhhhheee........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1r0k D 3 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSLAEMATVTPERAVQHP---MGAKISIDSATMMNKGLELIEAFHLFQIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSPDMRTPIGHTLAWPKRMETPAESLDFTKLRQMDFEAPDYERFPALTLAMESIKSGGARPAVMNAANEIAVAAFLDKKIGFLDIAKIVEKTLDHYTPATPSSLEDVFAIDNEARIQAAALMES 385
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 | - | 212 222 232 242 252 262 272 282 292 302 312 322 332 342 352 362 372 382
200 204
Legend: |
|
→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |