1QP9 | PD0148 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   STRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7

Authors :   A. Lukens, D. King, R. Marmorstein

Date :   01 Jun 99 (Deposition) - 09 Oct 00 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,E,F  (1x)
Biol. Unit 2: C,D,G,H  (1x)

Keywords :   Zinc Binuclear Cluster, Coiled-Coil, Heptad Repeat, Transcription/Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. K. Lukens, D. A. King, R. Marmorstein
Structure Of Hap1-Pc7 Bound To Dna: Implications For Dna Recognition And Allosteric Effects Of Dna-Binding On Transcriptional Activation.
Nucleic Acids Res. V. 28 3853 2000
PubMed-ID: 11024163 | Reference-DOI: 10.1093/NAR/28.20.3853
(for further references see the PDB file header)

*Molecule 1 - DNA (5'- D(APCPGPCPTPAPTPTPAPTPCPGPCPTPAPTPTPAPGP T)-3')*
	Chains	:	E, G
	Engineered	:	YES
	Other Details	:	SEQUENCE NATURALLY OCCURING IN YEAST
	Synonym	:	DNA TARGET OF CYC7
	Synthetic	:	YES

*Molecule 2 - DNA (5'- D(APCPTPAPAPTPAPGPCPGPAPTPAPAPTPAPGPCPGP T)-3')*
	Chains	:	F, H
	Engineered	:	YES
	Other Details	:	SEQUENCE NATURALLY OCCURING IN YEAST
	Synonym	:	DNA TARGET OF CYC7
	Synthetic	:	YES

Molecule 3 - CYP1(HAP1-PC7) ACTIVATORY PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PRSET-A
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	HAP1-PC7 DNA BINDING DOMAIN, RESIDUES 55-130
	Mutation	:	YES
	Organism Common	:	BAKER'S YEAST
	Organism Scientific	:	SACCHAROMYCES CEREVISIAE
	Organism Taxid	:	4932

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B			E	F
Biological Unit 2 (1x)	:			C	D			G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 9)

No.	Name	Count	Type	Full Name
1	ZN	9	Ligand/Ion	ZINC ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:64 , CYS A:67 , CYS A:74 , CYS A:81 , ZN A:132	BINDING SITE FOR RESIDUE ZN A 131
2	AC2	SOFTWARE	CYS A:64 , CYS A:81 , CYS A:84 , CYS A:93 , ZN A:131	BINDING SITE FOR RESIDUE ZN A 132
3	AC3	SOFTWARE	CYS B:64 , CYS B:67 , CYS B:74 , CYS B:81 , ZN B:132	BINDING SITE FOR RESIDUE ZN B 131
4	AC4	SOFTWARE	CYS B:64 , CYS B:81 , CYS B:84 , CYS B:93 , ZN B:131	BINDING SITE FOR RESIDUE ZN B 132
5	AC5	SOFTWARE	CYS C:64 , CYS C:67 , CYS C:74 , CYS C:81 , ZN C:132	BINDING SITE FOR RESIDUE ZN C 131
6	AC6	SOFTWARE	CYS C:64 , CYS C:81 , CYS C:84 , CYS C:93 , ZN C:131	BINDING SITE FOR RESIDUE ZN C 132
7	AC7	SOFTWARE	CYS D:64 , CYS D:67 , CYS D:74 , CYS D:81 , ZN D:132	BINDING SITE FOR RESIDUE ZN D 131
8	AC8	SOFTWARE	CYS D:64 , CYS D:81 , CYS D:84 , CYS D:93 , ZN D:131	BINDING SITE FOR RESIDUE ZN D 132
9	AC9	SOFTWARE	HIS B:80 , HIS B:91 , HIS D:80 , HIS D:91	BINDING SITE FOR RESIDUE ZN B 133

(no "SS Bond" information available for 1QP9)

Asymmetric Unit

No.	Residues
1	Arg A:78	-	Pro A:79
2	Arg B:78	-	Pro B:79
3	Arg C:78	-	Pro C:79
4	Arg D:78	-	Pro D:79

(no "SAP(SNP)/Variant" information available for 1QP9)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZN2_CY6_FUNGAL_1	PS00463	Zn(2)-C6 fungal-type DNA-binding domain signature.	HAP1_YEASK	63-93	4	A:64-93 B:64-93 C:64-93 D:64-93
				HAP1_YEAST	63-93	4	A:64-93 B:64-93 C:64-93 D:64-93
				HAP1_YEASX	63-93	4	A:64-93 B:64-93 C:64-93 D:64-93
2	ZN2_CY6_FUNGAL_2	PS50048	Zn(2)-C6 fungal-type DNA-binding domain profile.	HAP1_YEASK	63-95	4	A:64-95 B:64-95 C:64-95 D:64-95
				HAP1_YEAST	63-95	4	A:64-95 B:64-95 C:64-95 D:64-95
				HAP1_YEASX	63-95	4	A:64-95 B:64-95 C:64-95 D:64-95

Biological Unit 1 (2, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZN2_CY6_FUNGAL_1	PS00463	Zn(2)-C6 fungal-type DNA-binding domain signature.	HAP1_YEASK	63-93	2	A:64-93 B:64-93 - -
				HAP1_YEAST	63-93	2	A:64-93 B:64-93 - -
				HAP1_YEASX	63-93	2	A:64-93 B:64-93 - -
2	ZN2_CY6_FUNGAL_2	PS50048	Zn(2)-C6 fungal-type DNA-binding domain profile.	HAP1_YEASK	63-95	2	A:64-95 B:64-95 - -
				HAP1_YEAST	63-95	2	A:64-95 B:64-95 - -
				HAP1_YEASX	63-95	2	A:64-95 B:64-95 - -

Biological Unit 2 (2, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZN2_CY6_FUNGAL_1	PS00463	Zn(2)-C6 fungal-type DNA-binding domain signature.	HAP1_YEASK	63-93	2	- - C:64-93 D:64-93
				HAP1_YEAST	63-93	2	- - C:64-93 D:64-93
				HAP1_YEASX	63-93	2	- - C:64-93 D:64-93
2	ZN2_CY6_FUNGAL_2	PS50048	Zn(2)-C6 fungal-type DNA-binding domain profile.	HAP1_YEASK	63-95	2	- - C:64-95 D:64-95
				HAP1_YEAST	63-95	2	- - C:64-95 D:64-95
				HAP1_YEASX	63-95	2	- - C:64-95 D:64-95

(no "Exon" information available for 1QP9)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:76
 aligned with HAP1_YEASK | G2WJ80 from UniProtKB/Swiss-Prot  Length:1480

    Alignment length:76
                                    64        74        84        94       104       114       124      
           HAP1_YEASK    55 RKRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTLSK 130
               SCOP domains d1qp9a1 A:55-97 Hap1 (Cyp1)                d1qp9a2 A:98-130 HAP1             SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhh.........hhhhhhh.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------ZN2_CY6_FUNGAL_1  PDB: A:64-93 ------------------------------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------ZN2_CY6_FUNGAL_2  PDB: A:64-95   ----------------------------------- PROSITE (3)
                 Transcript ---------------------------------------------------------------------------- Transcript
                 1qp9 A  55 RKRNRIPLGCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTLSK 130
                                    64        74        84        94       104       114       124

Chain A from PDB  Type:PROTEIN  Length:76
 aligned with HAP1_YEAST | P0CE41 from UniProtKB/Swiss-Prot  Length:1502

    Alignment length:76
                                    64        74        84        94       104       114       124      
           HAP1_YEAST    55 RKRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTLSK 130
               SCOP domains d1qp9a1 A:55-97 Hap1 (Cyp1)                d1qp9a2 A:98-130 HAP1             SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhh.........hhhhhhh.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------ZN2_CY6_FUNGAL_1  PDB: A:64-93 ------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) --------ZN2_CY6_FUNGAL_2  PDB: A:64-95   ----------------------------------- PROSITE (5)
                 Transcript ---------------------------------------------------------------------------- Transcript
                 1qp9 A  55 RKRNRIPLGCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTLSK 130
                                    64        74        84        94       104       114       124

Chain A from PDB  Type:PROTEIN  Length:76
 aligned with HAP1_YEASX | P0CS82 from UniProtKB/Swiss-Prot  Length:1483

    Alignment length:76
                                    64        74        84        94       104       114       124      
           HAP1_YEASX    55 RKRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTLSK 130
               SCOP domains d1qp9a1 A:55-97 Hap1 (Cyp1)                d1qp9a2 A:98-130 HAP1             SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhh.........hhhhhhh.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) --------ZN2_CY6_FUNGAL_2  PDB: A:64-95   ----------------------------------- PROSITE (4)
                PROSITE (5) ---------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) --------ZN2_CY6_FUNGAL_1  PDB: A:64-93 ------------------------------------- PROSITE (6)
                 Transcript ---------------------------------------------------------------------------- Transcript
                 1qp9 A  55 RKRNRIPLGCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTLSK 130
                                    64        74        84        94       104       114       124

Chain B from PDB  Type:PROTEIN  Length:74
 aligned with HAP1_YEASK | G2WJ80 from UniProtKB/Swiss-Prot  Length:1480

    Alignment length:74
                                    65        75        85        95       105       115       125    
           HAP1_YEASK    56 KRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTLS 129
               SCOP domains d1qp9b1 B:56-97 Hap1 (Cyp1)               d1qp9b2 B:98-129 HAP1            SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhh..........hhhhhh.hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------ZN2_CY6_FUNGAL_1  PDB: B:64-93 ------------------------------------ PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------ZN2_CY6_FUNGAL_2  PDB: B:64-95   ---------------------------------- PROSITE (3)
                 Transcript -------------------------------------------------------------------------- Transcript
                 1qp9 B  56 KRNRIPLGCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTLS 129
                                    65        75        85        95       105       115       125

Chain B from PDB  Type:PROTEIN  Length:74
 aligned with HAP1_YEAST | P0CE41 from UniProtKB/Swiss-Prot  Length:1502

    Alignment length:74
                                    65        75        85        95       105       115       125    
           HAP1_YEAST    56 KRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTLS 129
               SCOP domains d1qp9b1 B:56-97 Hap1 (Cyp1)               d1qp9b2 B:98-129 HAP1            SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhh..........hhhhhh.hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------ZN2_CY6_FUNGAL_1  PDB: B:64-93 ------------------------------------ PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) -------ZN2_CY6_FUNGAL_2  PDB: B:64-95   ---------------------------------- PROSITE (5)
                 Transcript -------------------------------------------------------------------------- Transcript
                 1qp9 B  56 KRNRIPLGCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTLS 129
                                    65        75        85        95       105       115       125

Chain B from PDB  Type:PROTEIN  Length:74
 aligned with HAP1_YEASX | P0CS82 from UniProtKB/Swiss-Prot  Length:1483

    Alignment length:74
                                    65        75        85        95       105       115       125    
           HAP1_YEASX    56 KRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTLS 129
               SCOP domains d1qp9b1 B:56-97 Hap1 (Cyp1)               d1qp9b2 B:98-129 HAP1            SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhh..........hhhhhh.hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------ZN2_CY6_FUNGAL_2  PDB: B:64-95   ---------------------------------- PROSITE (4)
                PROSITE (5) -------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) -------ZN2_CY6_FUNGAL_1  PDB: B:64-93 ------------------------------------ PROSITE (6)
                 Transcript -------------------------------------------------------------------------- Transcript
                 1qp9 B  56 KRNRIPLGCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTLS 129
                                    65        75        85        95       105       115       125

Chain C from PDB  Type:PROTEIN  Length:71
 aligned with HAP1_YEASK | G2WJ80 from UniProtKB/Swiss-Prot  Length:1480

    Alignment length:71
                                    67        77        87        97       107       117       127 
           HAP1_YEASK    58 NRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
               SCOP domains d1qp9c1 C:58-97 Hap1 (Cyp1)             d1qp9c2 C:98-128 HAP1           SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhh..........hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----ZN2_CY6_FUNGAL_1  PDB: C:64-93 ----------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -----ZN2_CY6_FUNGAL_2  PDB: C:64-95   --------------------------------- PROSITE (3)
                 Transcript ----------------------------------------------------------------------- Transcript
                 1qp9 C  58 NRIPLGCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
                                    67        77        87        97       107       117       127

Chain C from PDB  Type:PROTEIN  Length:71
 aligned with HAP1_YEAST | P0CE41 from UniProtKB/Swiss-Prot  Length:1502

    Alignment length:71
                                    67        77        87        97       107       117       127 
           HAP1_YEAST    58 NRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
               SCOP domains d1qp9c1 C:58-97 Hap1 (Cyp1)             d1qp9c2 C:98-128 HAP1           SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhh..........hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -----ZN2_CY6_FUNGAL_1  PDB: C:64-93 ----------------------------------- PROSITE (2)
                PROSITE (3) ----------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ----------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) -----ZN2_CY6_FUNGAL_2  PDB: C:64-95   --------------------------------- PROSITE (5)
                 Transcript ----------------------------------------------------------------------- Transcript
                 1qp9 C  58 NRIPLGCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
                                    67        77        87        97       107       117       127

Chain C from PDB  Type:PROTEIN  Length:71
 aligned with HAP1_YEASX | P0CS82 from UniProtKB/Swiss-Prot  Length:1483

    Alignment length:71
                                    67        77        87        97       107       117       127 
           HAP1_YEASX    58 NRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
               SCOP domains d1qp9c1 C:58-97 Hap1 (Cyp1)             d1qp9c2 C:98-128 HAP1           SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhh..........hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -----ZN2_CY6_FUNGAL_2  PDB: C:64-95   --------------------------------- PROSITE (4)
                PROSITE (5) ----------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) -----ZN2_CY6_FUNGAL_1  PDB: C:64-93 ----------------------------------- PROSITE (6)
                 Transcript ----------------------------------------------------------------------- Transcript
                 1qp9 C  58 NRIPLGCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTL 128
                                    67        77        87        97       107       117       127

Chain D from PDB  Type:PROTEIN  Length:75
 aligned with HAP1_YEASK | G2WJ80 from UniProtKB/Swiss-Prot  Length:1480

    Alignment length:75
                                    64        74        84        94       104       114       124     
           HAP1_YEASK    55 RKRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTLS 129
               SCOP domains d1qp9d1 D:55-97 Hap1 (Cyp1)                d1qp9d2 D:98-129 HAP1            SCOP domains
               CATH domains --------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------Zn_clus-1qp9D01 D:62-100               ----------------------------- Pfam domains (1)
           Pfam domains (2) -------Zn_clus-1qp9D02 D:62-100               ----------------------------- Pfam domains (2)
           Pfam domains (3) -------Zn_clus-1qp9D03 D:62-100               ----------------------------- Pfam domains (3)
           Pfam domains (4) -------Zn_clus-1qp9D04 D:62-100               ----------------------------- Pfam domains (4)
         Sec.struct. author .........hhhhhhh..........hhhhhhh.hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------ZN2_CY6_FUNGAL_1  PDB: D:64-93 ------------------------------------ PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------ZN2_CY6_FUNGAL_2  PDB: D:64-95   ---------------------------------- PROSITE (3)
                 Transcript --------------------------------------------------------------------------- Transcript
                 1qp9 D  55 RKRNRIPLGCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTLS 129
                                    64        74        84        94       104       114       124

Chain D from PDB  Type:PROTEIN  Length:75
 aligned with HAP1_YEAST | P0CE41 from UniProtKB/Swiss-Prot  Length:1502

    Alignment length:75
                                    64        74        84        94       104       114       124     
           HAP1_YEAST    55 RKRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTLS 129
               SCOP domains d1qp9d1 D:55-97 Hap1 (Cyp1)                d1qp9d2 D:98-129 HAP1            SCOP domains
               CATH domains --------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------Zn_clus-1qp9D01 D:62-100               ----------------------------- Pfam domains (1)
           Pfam domains (2) -------Zn_clus-1qp9D02 D:62-100               ----------------------------- Pfam domains (2)
           Pfam domains (3) -------Zn_clus-1qp9D03 D:62-100               ----------------------------- Pfam domains (3)
           Pfam domains (4) -------Zn_clus-1qp9D04 D:62-100               ----------------------------- Pfam domains (4)
         Sec.struct. author .........hhhhhhh..........hhhhhhh.hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------ZN2_CY6_FUNGAL_1  PDB: D:64-93 ------------------------------------ PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) --------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) --------ZN2_CY6_FUNGAL_2  PDB: D:64-95   ---------------------------------- PROSITE (5)
                 Transcript --------------------------------------------------------------------------- Transcript
                 1qp9 D  55 RKRNRIPLGCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTLS 129
                                    64        74        84        94       104       114       124

Chain D from PDB  Type:PROTEIN  Length:75
 aligned with HAP1_YEASX | P0CS82 from UniProtKB/Swiss-Prot  Length:1483

    Alignment length:75
                                    64        74        84        94       104       114       124     
           HAP1_YEASX    55 RKRNRIPLSCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTLS 129
               SCOP domains d1qp9d1 D:55-97 Hap1 (Cyp1)                d1qp9d2 D:98-129 HAP1            SCOP domains
               CATH domains --------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------Zn_clus-1qp9D01 D:62-100               ----------------------------- Pfam domains (1)
           Pfam domains (2) -------Zn_clus-1qp9D02 D:62-100               ----------------------------- Pfam domains (2)
           Pfam domains (3) -------Zn_clus-1qp9D03 D:62-100               ----------------------------- Pfam domains (3)
           Pfam domains (4) -------Zn_clus-1qp9D04 D:62-100               ----------------------------- Pfam domains (4)
         Sec.struct. author .........hhhhhhh..........hhhhhhh.hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) --------ZN2_CY6_FUNGAL_2  PDB: D:64-95   ---------------------------------- PROSITE (4)
                PROSITE (5) --------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) --------ZN2_CY6_FUNGAL_1  PDB: D:64-93 ------------------------------------ PROSITE (6)
                 Transcript --------------------------------------------------------------------------- Transcript
                 1qp9 D  55 RKRNRIPLGCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTLS 129
                                    64        74        84        94       104       114       124

Chain E from PDB  Type:DNA  Length:20
                                                    
                 1qp9 E   1 ACGCTATTATCGCTATTAGT  20
                                    10        20

Chain F from PDB  Type:DNA  Length:20
                                                    
                 1qp9 F   1 ACTAATAGCGATAATAGCGT  20
                                    10        20

Chain G from PDB  Type:DNA  Length:20
                                                    
                 1qp9 G   1 ACGCTATTATCGCTATTAGT  20
                                    10        20

Chain H from PDB  Type:DNA  Length:17
                                                 
                 1qp9 H   3 TAATAGCGATAATAGCG  19
                                    12

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Coiled coil proteins (689)

Fold: Parallel coiled-coil (407)

Superfamily: Leucine zipper domain (105)

Family: Leucine zipper domain (105)

Protein domain: HAP1 (3)

Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] (3)

1a	d1qp9a2	A:98-130
1b	d1qp9b2	B:98-129
1c	d1qp9c2	C:98-128
1d	d1qp9d2	D:98-129

Class: Small proteins (3458)

Fold: Zn2/Cys6 DNA-binding domain (15)

Superfamily: Zn2/Cys6 DNA-binding domain (15)

Family: Zn2/Cys6 DNA-binding domain (15)

Protein domain: Hap1 (Cyp1) (4)

Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] (4)

2a	d1qp9a1	A:55-97
2b	d1qp9b1	B:56-97
2c	d1qp9c1	C:58-97
2d	d1qp9d1	D:55-97

(no "CATH Domain" information available for 1QP9)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Zn_clus] (4)

Family: Zn_clus (4)

Saccharomyces cerevisiae (Bakers yeast) (2)

1a	Zn_clus-1qp9D01	D:62-100
1b	Zn_clus-1qp9D02	D:62-100
1c	Zn_clus-1qp9D03	D:62-100
1d	Zn_clus-1qp9D04	D:62-100

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (HAP1_YEAST | P0CE41)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0000978	RNA polymerase II core promoter proximal region sequence-specific DNA binding	Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II.
	GO:0000981	RNA polymerase II transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0001077	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0000436	carbon catabolite activation of transcription from RNA polymerase II promoter	Any process involving carbon catabolites that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
	GO:0071169	establishment of protein localization to chromatin	The directed movement of a protein to a part of a chromosome that is organized into chromatin.
	GO:0061428	negative regulation of transcription from RNA polymerase II promoter in response to hypoxia	Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hypoxia stimulus.
	GO:0043457	regulation of cellular respiration	Any process that modulates the frequency, rate or extent of cellular respiration, the enzymatic release of energy from organic compounds.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006366	transcription from RNA polymerase II promoter	The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain A,B,C,D (HAP1_YEASX | P0CS82)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0000981	RNA polymerase II transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0043457	regulation of cellular respiration	Any process that modulates the frequency, rate or extent of cellular respiration, the enzymatic release of energy from organic compounds.
	GO:0006357	regulation of transcription from RNA polymerase II promoter	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain A,B,C,D (HAP1_YEASK | G2WJ80)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0000981	RNA polymerase II transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0043457	regulation of cellular respiration	Any process that modulates the frequency, rate or extent of cellular respiration, the enzymatic release of energy from organic compounds.
	GO:0006357	regulation of transcription from RNA polymerase II promoter	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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	1qp9
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(no "Related Entries Specified in the PDB File" available for 1QP9)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 9)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 8)

Exons (0, 0)

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SCOP Domains (2, 8)

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Pfam Domains (1, 4)

Gene Ontology (17, 34)

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