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1QP9
Biol. Unit 1
Info
Asym.Unit (89 KB)
Biol.Unit 1 (44 KB)
Biol.Unit 2 (43 KB)
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(1)
Title
:
STRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7
Authors
:
A. Lukens, D. King, R. Marmorstein
Date
:
01 Jun 99 (Deposition) - 09 Oct 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,E,F (1x)
Biol. Unit 2: C,D,G,H (1x)
Keywords
:
Zinc Binuclear Cluster, Coiled-Coil, Heptad Repeat, Transcription/Dna Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. K. Lukens, D. A. King, R. Marmorstein
Structure Of Hap1-Pc7 Bound To Dna: Implications For Dna Recognition And Allosteric Effects Of Dna-Binding On Transcriptional Activation.
Nucleic Acids Res. V. 28 3853 2000
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
1h: ZINC ION (ZNh)
1i: ZINC ION (ZNi)
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:64 , CYS A:67 , CYS A:74 , CYS A:81 , ZN A:132
BINDING SITE FOR RESIDUE ZN A 131
2
AC2
SOFTWARE
CYS A:64 , CYS A:81 , CYS A:84 , CYS A:93 , ZN A:131
BINDING SITE FOR RESIDUE ZN A 132
3
AC3
SOFTWARE
CYS B:64 , CYS B:67 , CYS B:74 , CYS B:81 , ZN B:132
BINDING SITE FOR RESIDUE ZN B 131
4
AC4
SOFTWARE
CYS B:64 , CYS B:81 , CYS B:84 , CYS B:93 , ZN B:131
BINDING SITE FOR RESIDUE ZN B 132
5
AC9
SOFTWARE
HIS B:80 , HIS B:91 , HIS D:80 , HIS D:91
BINDING SITE FOR RESIDUE ZN B 133
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: ZN2_CY6_FUNGAL_1 (A:64-93,B:64-93)
2: ZN2_CY6_FUNGAL_2 (A:64-95,B:64-95)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZN2_CY6_FUNGAL_1
PS00463
Zn(2)-C6 fungal-type DNA-binding domain signature.
HAP1_YEASK
63-93
2
A:64-93
B:64-93
-
-
HAP1_YEAST
63-93
2
A:64-93
B:64-93
-
-
HAP1_YEASX
63-93
2
A:64-93
B:64-93
-
-
2
ZN2_CY6_FUNGAL_2
PS50048
Zn(2)-C6 fungal-type DNA-binding domain profile.
HAP1_YEASK
63-95
2
A:64-95
B:64-95
-
-
HAP1_YEAST
63-95
2
A:64-95
B:64-95
-
-
HAP1_YEASX
63-95
2
A:64-95
B:64-95
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1qp9a2 (A:98-130)
1b: SCOP_d1qp9b2 (B:98-129)
1c: SCOP_d1qp9c2 (C:98-128)
1d: SCOP_d1qp9d2 (D:98-129)
2a: SCOP_d1qp9a1 (A:55-97)
2b: SCOP_d1qp9b1 (B:56-97)
2c: SCOP_d1qp9c1 (C:58-97)
2d: SCOP_d1qp9d1 (D:55-97)
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Protein Domains
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Organisms
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Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
Leucine zipper domain
(105)
Family
:
Leucine zipper domain
(105)
Protein domain
:
HAP1
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(3)
1a
d1qp9a2
A:98-130
1b
d1qp9b2
B:98-129
1c
d1qp9c2
C:98-128
1d
d1qp9d2
D:98-129
Class
:
Small proteins
(3458)
Fold
:
Zn2/Cys6 DNA-binding domain
(15)
Superfamily
:
Zn2/Cys6 DNA-binding domain
(15)
Family
:
Zn2/Cys6 DNA-binding domain
(15)
Protein domain
:
Hap1 (Cyp1)
(4)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(4)
2a
d1qp9a1
A:55-97
2b
d1qp9b1
B:56-97
2c
d1qp9c1
C:58-97
2d
d1qp9d1
D:55-97
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Zn_clus_1qp9D01 (D:62-100)
1b: PFAM_Zn_clus_1qp9D02 (D:62-100)
1c: PFAM_Zn_clus_1qp9D03 (D:62-100)
1d: PFAM_Zn_clus_1qp9D04 (D:62-100)
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Clan
:
no clan defined [family: Zn_clus]
(4)
Family
:
Zn_clus
(4)
Saccharomyces cerevisiae (Bakers yeast)
(2)
1a
Zn_clus-1qp9D01
D:62-100
1b
Zn_clus-1qp9D02
D:62-100
1c
Zn_clus-1qp9D03
D:62-100
1d
Zn_clus-1qp9D04
D:62-100
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Asymmetric Unit 1
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Asym.Unit (89 KB)
Header - Asym.Unit
Biol.Unit 1 (44 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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