Chain A from PDB Type:PROTEIN Length:182
aligned with TBP1_ARATH | P28147 from UniProtKB/Swiss-Prot Length:200
Alignment length:182
26 36 46 56 66 76 86 96 106 116 126 136 146 156 166 176 186 196
TBP1_ARATH 17 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKI 198
SCOP domains d1qnaa1 A:17-115 TATA-box binding protein (TBP), C-terminal domain d1qnaa2 A:116-198 TATA-box binding protein (TBP), C-terminal domain SCOP domains
CATH domains --1qnaA01 1qnaA02 A:30-115 TATA-Binding Protein 1qnaA01 A:19-29,A:116-197 TATA-Binding Protein - CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .......eeeeeeeeee.....hhhhhhhhh..eee......eeeeee....eeeeee...eeeee...hhhhhhhhhhhhhhhhhhh............eeeeeee.....hhhhhhhhh.............eeeee....eeeee....eeeeeee.hhhhhhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------------------------TFIID PDB: A:52-101 UniProt: 52-101 -----------------------------------------TFIID PDB: A:143-192 UniProt: 143-192 ------ PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1qna A 17 HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKI 198
26 36 46 56 66 76 86 96 106 116 126 136 146 156 166 176 186 196
Chain B from PDB Type:PROTEIN Length:186
aligned with TBP1_ARATH | P28147 from UniProtKB/Swiss-Prot Length:200
Alignment length:186
21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191
TBP1_ARATH 12 VDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRK 197
SCOP domains d1qnab1 B:12-115 TATA-box binding protein (TBP), C-terminal domain d1qnab2 B:116-197 TATA-box binding protein (TBP), C-terminal domain SCOP domains
CATH domains -------1qnaB01 1qnaB02 B:30-115 TATA-Binding Protein 1qnaB01 B:19-29,B:116-197 TATA-Binding Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ............eeeeeeeeee.....hhhhhhhhh..eee......eeeeee....eeeeee...eeeeeee.hhhhhhhhhhhhhhhhhhh............eeeeeee.....hhhhhhhhh.............eeeee....eeeee....eeeeeee.hhhhhhhhhhhhhhhhh.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ----------------------------------------TFIID PDB: B:52-101 UniProt: 52-101 -----------------------------------------TFIID PDB: B:143-192 UniProt: 143-192 ----- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1qna B 12 VDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRK 197
21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191
Chain C from PDB Type:DNA Length:14
1qna C 201 GCTTTAAAAGGGCA 214
210
Chain D from PDB Type:DNA Length:14
1qna D 215 TGCCCTTTTAAAGC 228
224
Chain E from PDB Type:DNA Length:14
1qna E 201 GCTTTAAAAGGGCA 214
210
Chain F from PDB Type:DNA Length:14
1qna F 215 TGCCCTTTTAAAGC 228
224
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(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |