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(-) Description

Title :  CRYSTAL STRUCTURE OF RC-LH1 CORE COMPLEX FROM RHODOPSEUDOMONAS PALUSTRIS
 
Authors :  A. W. Roszak, T. D. Howard, J. Southall, A. T. Gardiner, C. J. Law, N. W. Isaacs, R. J. Cogdell
Date :  08 Jul 03  (Deposition) - 02 Mar 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  4.80
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1,2,3,4,5,6,7,8
Keywords :  Bacterial Photosynthetic Core Complex, Integral Membrane Proteins, Light Harvesting Complex, Reaction Centre, Photosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. W. Roszak, T. D. Howard, J. Southall, A. T. Gardiner, C. J. Law, N. W. Isaacs, R. J. Cogdell
Crystal Structure Of The Rc-Lh1 Core Complex From Rhodopseudomonas Palustris.
Science V. 302 1969 2003
PubMed-ID: 14671305  |  Reference-DOI: 10.1126/SCIENCE.1088892
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - REACTION CENTER PROTEIN L CHAIN
    Chains: A
    Organism Scientific: RHODOPSEUDOMONAS PALUSTRIS
    Organism Taxid: 1076
    Strain: STRAIN 2.1.6
    Synonym: PHOTOSYNTHETIC REACTION CENTER L SUBUNIT
 
Molecule 2 - REACTION CENTER PROTEIN M CHAIN
    Chains: B
    Organism Scientific: RHODOPSEUDOMONAS PALUSTRIS
    Organism Taxid: 1076
    Strain: STRAIN 2.1.6
    Synonym: PHOTOSYNTHETIC REACTION CENTER M SUBUNIT
 
Molecule 3 - REACTION CENTER PROTEIN H CHAIN
    Chains: C
    Organism Scientific: RHODOPSEUDOMONAS PALUSTRIS
    Organism Taxid: 1076
    Strain: STRAIN 2.1.6
    Synonym: PHOTOSYNTHETIC REACTION CENTER H SUBUNIT
 
Molecule 4 - LIGHT-HARVESTING PROTEIN B-800/850, ALPHA CHAIN
    Chains: D, F, H, J, L, N, P, R, T, V, X, Z, 1, 3, 5, 7
    Organism Scientific: RHODOPSEUDOMONAS PALUSTRIS
    Organism Taxid: 1076
    Strain: STRAIN 2.1.6
    Synonym: ANTENNA PIGMENT PROTEIN, ALPHA CHAIN
 
Molecule 5 - LIGHT-HARVESTING PROTEIN B-800/850, BETA CHAIN
    Chains: E, G, I, K, M, O, Q, S, U, W, Y, 2, 4, 6, 8
    Organism Scientific: RHODOPSEUDOMONAS PALUSTRIS
    Organism Taxid: 1076
    Strain: STRAIN 2.1.6
    Synonym: ANTENNA PIGMENT PROTEIN, BETA CHAIN

 Structural Features

(-) Chains, Units

  12345678910111213141516171819202122232425262728293031323334
Asymmetric/Biological Unit : ABCDEFGHIJKLMNOPQRSTUVWXYZ12345678

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 1727)

Asymmetric/Biological Unit (4, 1727)
No.NameCountTypeFull Name
1BCL34Ligand/IonBACTERIOCHLOROPHYLL A
2BPH2Ligand/IonBACTERIOPHEOPHYTIN A
3FE1Ligand/IonFE (III) ION
4UNK1690Mod. Amino Acid

(-) Sites  (36, 36)

Asymmetric Unit (36, 36)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREUNK A:174 , UNK A:178 , BCL A:302 , BPH A:401 , BCL B:303BINDING SITE FOR RESIDUE BCL A 301
02AC2SOFTWAREUNK A:124 , UNK A:157 , UNK A:176 , UNK A:244 , BCL A:301 , BCL B:303 , BCL B:304 , BPH B:402BINDING SITE FOR RESIDUE BCL A 302
03AC3SOFTWAREBCL A:301 , BCL A:302 , BPH A:401 , UNK B:153 , UNK B:187 , UNK B:190 , UNK B:205 , UNK B:206 , UNK B:280BINDING SITE FOR RESIDUE BCL B 303
04AC4SOFTWAREBCL A:302 , UNK B:203 , UNK B:207 , UNK B:210 , BPH B:402BINDING SITE FOR RESIDUE BCL B 304
05AC5SOFTWAREUNK A:181 , BCL A:301 , UNK B:67 , UNK B:129 , UNK B:150 , UNK B:273 , BCL B:303BINDING SITE FOR RESIDUE BPH A 401
06AC6SOFTWAREUNK A:121 , BCL A:302 , UNK B:210 , BCL B:304BINDING SITE FOR RESIDUE BPH B 402
07AC7SOFTWAREUNK E:22 , UNK E:25 , UNK E:26 , UNK E:29 , UNK E:30BINDING SITE FOR RESIDUE BCL E 1
08AC8SOFTWAREUNK D:27 , UNK E:26 , UNK E:33 , BCL G:3BINDING SITE FOR RESIDUE BCL D 2
09AC9SOFTWAREBCL D:2 , BCL F:4 , UNK G:29BINDING SITE FOR RESIDUE BCL G 3
10BC1SOFTWAREUNK F:27 , BCL G:3 , UNK G:33 , BCL I:5BINDING SITE FOR RESIDUE BCL F 4
11BC2SOFTWAREBCL F:4 , BCL H:6 , UNK I:22 , UNK I:26 , UNK I:29BINDING SITE FOR RESIDUE BCL I 5
12BC3SOFTWAREUNK H:23 , UNK H:27 , UNK H:30 , BCL I:5BINDING SITE FOR RESIDUE BCL H 6
13BC4SOFTWAREBCL J:8 , UNK K:26 , UNK K:29 , UNK K:30BINDING SITE FOR RESIDUE BCL K 36
14BC5SOFTWAREUNK J:23 , UNK J:27 , UNK J:30 , UNK K:33 , BCL K:36 , BCL M:36BINDING SITE FOR RESIDUE BCL J 8
15BC6SOFTWAREBCL J:8 , BCL L:10 , UNK M:29BINDING SITE FOR RESIDUE BCL M 36
16BC7SOFTWAREUNK L:23 , UNK L:27 , UNK M:33 , BCL M:36 , BCL N:11BINDING SITE FOR RESIDUE BCL L 10
17BC8SOFTWAREBCL L:10 , UNK N:24 , UNK N:27 , BCL N:38 , UNK O:33BINDING SITE FOR RESIDUE BCL N 11
18BC9SOFTWAREBCL N:11 , UNK N:27 , UNK N:30 , BCL P:38BINDING SITE FOR RESIDUE BCL N 38
19CC1SOFTWAREBCL N:38 , UNK P:23 , UNK P:24 , UNK P:27 , BCL P:39 , UNK Q:22 , UNK Q:26BINDING SITE FOR RESIDUE BCL P 38
20CC2SOFTWAREUNK P:27 , UNK P:30 , BCL P:38 , BCL S:36BINDING SITE FOR RESIDUE BCL P 39
21CC3SOFTWAREBCL P:39 , UNK R:27 , BCL R:38 , UNK S:22 , UNK S:26 , UNK S:29BINDING SITE FOR RESIDUE BCL S 36
22CC4SOFTWAREUNK R:30 , UNK R:34 , BCL S:36 , BCL U:36BINDING SITE FOR RESIDUE BCL R 38
23CC5SOFTWAREBCL R:38BINDING SITE FOR RESIDUE BCL U 36
24CC6SOFTWAREUNK T:30 , BCL V:38BINDING SITE FOR RESIDUE BCL T 38
25CC7SOFTWAREUNK T:30 , UNK T:33 , BCL T:38 , UNK V:27 , UNK W:29BINDING SITE FOR RESIDUE BCL V 38
26CC8SOFTWAREUNK W:19BINDING SITE FOR RESIDUE BCL W 36
27CC9SOFTWAREUNK Y:22 , UNK Y:26 , UNK Y:29 , BCL Y:37BINDING SITE FOR RESIDUE BCL Y 36
28DC1SOFTWAREBCL Y:36BINDING SITE FOR RESIDUE BCL Y 37
29DC2SOFTWAREBCL 1:38 , UNK 2:29BINDING SITE FOR RESIDUE BCL 2 36
30DC3SOFTWAREUNK 1:23 , UNK 1:27 , UNK 2:22 , UNK 2:33 , BCL 2:36 , BCL 3:38BINDING SITE FOR RESIDUE BCL 1 38
31DC4SOFTWAREBCL 1:38 , BCL 3:39BINDING SITE FOR RESIDUE BCL 3 38
32DC5SOFTWAREUNK 3:23 , UNK 3:27 , UNK 3:30 , BCL 3:38BINDING SITE FOR RESIDUE BCL 3 39
33DC6SOFTWAREUNK 6:29BINDING SITE FOR RESIDUE BCL 6 36
34DC7SOFTWAREUNK 5:23 , UNK 5:26 , UNK 5:27 , UNK 5:30 , UNK 6:26BINDING SITE FOR RESIDUE BCL 5 38
35DC8SOFTWAREUNK 8:26 , UNK 8:29BINDING SITE FOR RESIDUE BCL 8 36
36DC9SOFTWAREUNK 7:27BINDING SITE FOR RESIDUE BCL 7 38

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1PYH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1PYH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1PYH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1PYH)

(-) Exons   (0, 0)

(no "Exon" information available for 1PYH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain 1 from PDB  Type:PROTEIN  Length:26
                                                          
               SCOP domains d1pyh1_ 1:                 SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                 1pyh 1  12 xxxxxxxxxxxxxxxxxxxxxxxxxx  37
                            ||||||||21||||||||31||||||
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Chain 2 from PDB  Type:PROTEIN  Length:30
                                                              
               SCOP domains d1pyh2_ 2: RC-LH1 core complex SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                 1pyh 2   6 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  35
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                                  13-UNK   22-UNK   31-UNK


Chain 3 from PDB  Type:PROTEIN  Length:26
                                                          
               SCOP domains d1pyh3_ 3:                 SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                 1pyh 3  12 xxxxxxxxxxxxxxxxxxxxxxxxxx  37
                            ||||||||21||||||||31||||||
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                                  19-UNK   28-UNK   37-UNK


Chain 4 from PDB  Type:PROTEIN  Length:30
                                                              
               SCOP domains d1pyh4_ 4: RC-LH1 core complex SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                 1pyh 4   6 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  35
                            ||||||||15||||||||25||||||||35
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                                  13-UNK   22-UNK   31-UNK


Chain 5 from PDB  Type:PROTEIN  Length:26
                                                          
               SCOP domains d1pyh5_ 5:                 SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                 1pyh 5  12 xxxxxxxxxxxxxxxxxxxxxxxxxx  37
                            ||||||||21||||||||31||||||
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Chain 6 from PDB  Type:PROTEIN  Length:30
                                                              
               SCOP domains d1pyh6_ 6: RC-LH1 core complex SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                 1pyh 6   6 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  35
                            ||||||||15||||||||25||||||||35
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Chain 7 from PDB  Type:PROTEIN  Length:26
                                                          
               SCOP domains d1pyh7_ 7:                 SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                 1pyh 7  12 xxxxxxxxxxxxxxxxxxxxxxxxxx  37
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Chain 8 from PDB  Type:PROTEIN  Length:30
                                                              
               SCOP domains d1pyh8_ 8: RC-LH1 core complex SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                 1pyh 8   6 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  35
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Chain A from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains d1pyha_ A: RC-LH1 core complex                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh..............ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pyh A   1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 281
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Chain B from PDB  Type:PROTEIN  Length:302
                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d1pyhb_ B: RC-LH1 core complex                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee...........hhhhh......hhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.....hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pyh B   1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 302
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Chain C from PDB  Type:PROTEIN  Length:241
                                                                                                                                                                                                                                                                                 
               SCOP domains d1pyhc_ C: RC-LH1 core complex                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh..........................eeee......eeee...........eee........eee..hhhhhhhhhhh.................eee.hhh...eeeee......eee.....eeeeeeeeeee....eeeeeeeee....eeeee.hhhee....ee....hhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pyh C  10 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 250
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Chain D from PDB  Type:PROTEIN  Length:26
                                                          
               SCOP domains d1pyhd_ D:                 SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                 1pyh D  12 xxxxxxxxxxxxxxxxxxxxxxxxxx  37
                            ||||||||21||||||||31||||||
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                                17-UNK   26-UNK   35-UNK
                                 18-UNK   27-UNK   36-UNK
                                  19-UNK   28-UNK   37-UNK


Chain E from PDB  Type:PROTEIN  Length:30
                                                              
               SCOP domains d1pyhe_ E: RC-LH1 core complex SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                 1pyh E   6 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  35
                            ||||||||15||||||||25||||||||35
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                                11-UNK   20-UNK   29-UNK  
                                 12-UNK   21-UNK   30-UNK 
                                  13-UNK   22-UNK   31-UNK


Chain F from PDB  Type:PROTEIN  Length:26
                                                          
               SCOP domains d1pyhf_ F:                 SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                 1pyh F  12 xxxxxxxxxxxxxxxxxxxxxxxxxx  37
                            ||||||||21||||||||31||||||
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                              15-UNK   24-UNK   33-UNK
                               16-UNK   25-UNK   34-UNK
                                17-UNK   26-UNK   35-UNK
                                 18-UNK   27-UNK   36-UNK
                                  19-UNK   28-UNK   37-UNK


Chain G from PDB  Type:PROTEIN  Length:30
                                                              
               SCOP domains d1pyhg_ G: RC-LH1 core complex SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                 1pyh G   6 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  35
                            ||||||||15||||||||25||||||||35
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                               9-UNK   18-UNK   27-UNK    
                               10-UNK   19-UNK   28-UNK   
                                11-UNK   20-UNK   29-UNK  
                                 12-UNK   21-UNK   30-UNK 
                                  13-UNK   22-UNK   31-UNK


Chain H from PDB  Type:PROTEIN  Length:26
                                                          
               SCOP domains d1pyhh_ H:                 SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                 1pyh H  12 xxxxxxxxxxxxxxxxxxxxxxxxxx  37
                            ||||||||21||||||||31||||||
                            |||||||20-UNK|||29-UNK||||
                           12-UNK|||21-UNK|||30-UNK|||
                            13-UNK|| 22-UNK|| 31-UNK||
                             14-UNK|  23-UNK|  32-UNK|
                              15-UNK   24-UNK   33-UNK
                               16-UNK   25-UNK   34-UNK
                                17-UNK   26-UNK   35-UNK
                                 18-UNK   27-UNK   36-UNK
                                  19-UNK   28-UNK   37-UNK


Chain I from PDB  Type:PROTEIN  Length:30
                                                              
               SCOP domains d1pyhi_ I: RC-LH1 core complex SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                 1pyh I   6 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  35
                            ||||||||15||||||||25||||||||35
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                               9-UNK   18-UNK   27-UNK    
                               10-UNK   19-UNK   28-UNK   
                                11-UNK   20-UNK   29-UNK  
                                 12-UNK   21-UNK   30-UNK 
                                  13-UNK   22-UNK   31-UNK


Chain J from PDB  Type:PROTEIN  Length:26
                                                          
               SCOP domains d1pyhj_ J:                 SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                 1pyh J  12 xxxxxxxxxxxxxxxxxxxxxxxxxx  37
                            ||||||||21||||||||31||||||
                            |||||||20-UNK|||29-UNK||||
                           12-UNK|||21-UNK|||30-UNK|||
                            13-UNK|| 22-UNK|| 31-UNK||
                             14-UNK|  23-UNK|  32-UNK|
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                               16-UNK   25-UNK   34-UNK
                                17-UNK   26-UNK   35-UNK
                                 18-UNK   27-UNK   36-UNK
                                  19-UNK   28-UNK   37-UNK


Chain K from PDB  Type:PROTEIN  Length:30
                                                              
               SCOP domains d1pyhk_ K: RC-LH1 core complex SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                 1pyh K   6 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  35
                            ||||||||15||||||||25||||||||35
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                            6-UNK|||15-UNK|||24-UNK|||33-UNK
                             7-UNK|| 16-UNK|| 25-UNK|| 34-UNK
                              8-UNK|  17-UNK|  26-UNK|  35-UNK
                               9-UNK   18-UNK   27-UNK    
                               10-UNK   19-UNK   28-UNK   
                                11-UNK   20-UNK   29-UNK  
                                 12-UNK   21-UNK   30-UNK 
                                  13-UNK   22-UNK   31-UNK


Chain L from PDB  Type:PROTEIN  Length:26
                                                          
               SCOP domains d1pyhl_ L:                 SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                 1pyh L  12 xxxxxxxxxxxxxxxxxxxxxxxxxx  37
                            ||||||||21||||||||31||||||
                            |||||||20-UNK|||29-UNK||||
                           12-UNK|||21-UNK|||30-UNK|||
                            13-UNK|| 22-UNK|| 31-UNK||
                             14-UNK|  23-UNK|  32-UNK|
                              15-UNK   24-UNK   33-UNK
                               16-UNK   25-UNK   34-UNK
                                17-UNK   26-UNK   35-UNK
                                 18-UNK   27-UNK   36-UNK
                                  19-UNK   28-UNK   37-UNK


Chain M from PDB  Type:PROTEIN  Length:30
                                                              
               SCOP domains d1pyhm_ M: RC-LH1 core complex SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                 1pyh M   6 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  35
                            ||||||||15||||||||25||||||||35
                            |||||||14-UNK|||23-UNK|||32-UNK
                            6-UNK|||15-UNK|||24-UNK|||33-UNK
                             7-UNK|| 16-UNK|| 25-UNK|| 34-UNK
                              8-UNK|  17-UNK|  26-UNK|  35-UNK
                               9-UNK   18-UNK   27-UNK    
                               10-UNK   19-UNK   28-UNK   
                                11-UNK   20-UNK   29-UNK  
                                 12-UNK   21-UNK   30-UNK 
                                  13-UNK   22-UNK   31-UNK


Chain N from PDB  Type:PROTEIN  Length:26
                                                          
               SCOP domains d1pyhn_ N:                 SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                 1pyh N  12 xxxxxxxxxxxxxxxxxxxxxxxxxx  37
                            ||||||||21||||||||31||||||
                            |||||||20-UNK|||29-UNK||||
                           12-UNK|||21-UNK|||30-UNK|||
                            13-UNK|| 22-UNK|| 31-UNK||
                             14-UNK|  23-UNK|  32-UNK|
                              15-UNK   24-UNK   33-UNK
                               16-UNK   25-UNK   34-UNK
                                17-UNK   26-UNK   35-UNK
                                 18-UNK   27-UNK   36-UNK
                                  19-UNK   28-UNK   37-UNK


Chain O from PDB  Type:PROTEIN  Length:30
                                                              
               SCOP domains d1pyho_ O: RC-LH1 core complex SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                 1pyh O   6 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  35
                            ||||||||15||||||||25||||||||35
                            |||||||14-UNK|||23-UNK|||32-UNK
                            6-UNK|||15-UNK|||24-UNK|||33-UNK
                             7-UNK|| 16-UNK|| 25-UNK|| 34-UNK
                              8-UNK|  17-UNK|  26-UNK|  35-UNK
                               9-UNK   18-UNK   27-UNK    
                               10-UNK   19-UNK   28-UNK   
                                11-UNK   20-UNK   29-UNK  
                                 12-UNK   21-UNK   30-UNK 
                                  13-UNK   22-UNK   31-UNK


Chain P from PDB  Type:PROTEIN  Length:26
                                                          
               SCOP domains d1pyhp_ P:                 SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                 1pyh P  12 xxxxxxxxxxxxxxxxxxxxxxxxxx  37
                            ||||||||21||||||||31||||||
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                           12-UNK|||21-UNK|||30-UNK|||
                            13-UNK|| 22-UNK|| 31-UNK||
                             14-UNK|  23-UNK|  32-UNK|
                              15-UNK   24-UNK   33-UNK
                               16-UNK   25-UNK   34-UNK
                                17-UNK   26-UNK   35-UNK
                                 18-UNK   27-UNK   36-UNK
                                  19-UNK   28-UNK   37-UNK


Chain Q from PDB  Type:PROTEIN  Length:30
                                                              
               SCOP domains d1pyhq_ Q: RC-LH1 core complex SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                 1pyh Q   6 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  35
                            ||||||||15||||||||25||||||||35
                            |||||||14-UNK|||23-UNK|||32-UNK
                            6-UNK|||15-UNK|||24-UNK|||33-UNK
                             7-UNK|| 16-UNK|| 25-UNK|| 34-UNK
                              8-UNK|  17-UNK|  26-UNK|  35-UNK
                               9-UNK   18-UNK   27-UNK    
                               10-UNK   19-UNK   28-UNK   
                                11-UNK   20-UNK   29-UNK  
                                 12-UNK   21-UNK   30-UNK 
                                  13-UNK   22-UNK   31-UNK


Chain R from PDB  Type:PROTEIN  Length:26
                                                          
               SCOP domains d1pyhr_ R:                 SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                 1pyh R  12 xxxxxxxxxxxxxxxxxxxxxxxxxx  37
                            ||||||||21||||||||31||||||
                            |||||||20-UNK|||29-UNK||||
                           12-UNK|||21-UNK|||30-UNK|||
                            13-UNK|| 22-UNK|| 31-UNK||
                             14-UNK|  23-UNK|  32-UNK|
                              15-UNK   24-UNK   33-UNK
                               16-UNK   25-UNK   34-UNK
                                17-UNK   26-UNK   35-UNK
                                 18-UNK   27-UNK   36-UNK
                                  19-UNK   28-UNK   37-UNK


Chain S from PDB  Type:PROTEIN  Length:30
                                                              
               SCOP domains d1pyhs_ S: RC-LH1 core complex SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                 1pyh S   6 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  35
                            ||||||||15||||||||25||||||||35
                            |||||||14-UNK|||23-UNK|||32-UNK
                            6-UNK|||15-UNK|||24-UNK|||33-UNK
                             7-UNK|| 16-UNK|| 25-UNK|| 34-UNK
                              8-UNK|  17-UNK|  26-UNK|  35-UNK
                               9-UNK   18-UNK   27-UNK    
                               10-UNK   19-UNK   28-UNK   
                                11-UNK   20-UNK   29-UNK  
                                 12-UNK   21-UNK   30-UNK 
                                  13-UNK   22-UNK   31-UNK


Chain T from PDB  Type:PROTEIN  Length:26
                                                          
               SCOP domains d1pyht_ T:                 SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                 1pyh T  12 xxxxxxxxxxxxxxxxxxxxxxxxxx  37
                            ||||||||21||||||||31||||||
                            |||||||20-UNK|||29-UNK||||
                           12-UNK|||21-UNK|||30-UNK|||
                            13-UNK|| 22-UNK|| 31-UNK||
                             14-UNK|  23-UNK|  32-UNK|
                              15-UNK   24-UNK   33-UNK
                               16-UNK   25-UNK   34-UNK
                                17-UNK   26-UNK   35-UNK
                                 18-UNK   27-UNK   36-UNK
                                  19-UNK   28-UNK   37-UNK


Chain U from PDB  Type:PROTEIN  Length:30
                                                              
               SCOP domains d1pyhu_ U: RC-LH1 core complex SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                 1pyh U   6 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  35
                            ||||||||15||||||||25||||||||35
                            |||||||14-UNK|||23-UNK|||32-UNK
                            6-UNK|||15-UNK|||24-UNK|||33-UNK
                             7-UNK|| 16-UNK|| 25-UNK|| 34-UNK
                              8-UNK|  17-UNK|  26-UNK|  35-UNK
                               9-UNK   18-UNK   27-UNK    
                               10-UNK   19-UNK   28-UNK   
                                11-UNK   20-UNK   29-UNK  
                                 12-UNK   21-UNK   30-UNK 
                                  13-UNK   22-UNK   31-UNK


Chain V from PDB  Type:PROTEIN  Length:26
                                                          
               SCOP domains d1pyhv_ V:                 SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                 1pyh V  12 xxxxxxxxxxxxxxxxxxxxxxxxxx  37
                            ||||||||21||||||||31||||||
                            |||||||20-UNK|||29-UNK||||
                           12-UNK|||21-UNK|||30-UNK|||
                            13-UNK|| 22-UNK|| 31-UNK||
                             14-UNK|  23-UNK|  32-UNK|
                              15-UNK   24-UNK   33-UNK
                               16-UNK   25-UNK   34-UNK
                                17-UNK   26-UNK   35-UNK
                                 18-UNK   27-UNK   36-UNK
                                  19-UNK   28-UNK   37-UNK


Chain W from PDB  Type:PROTEIN  Length:30
                                                              
               SCOP domains d1pyhw_ W: RC-LH1 core complex SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                 1pyh W   6 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  35
                            ||||||||15||||||||25||||||||35
                            |||||||14-UNK|||23-UNK|||32-UNK
                            6-UNK|||15-UNK|||24-UNK|||33-UNK
                             7-UNK|| 16-UNK|| 25-UNK|| 34-UNK
                              8-UNK|  17-UNK|  26-UNK|  35-UNK
                               9-UNK   18-UNK   27-UNK    
                               10-UNK   19-UNK   28-UNK   
                                11-UNK   20-UNK   29-UNK  
                                 12-UNK   21-UNK   30-UNK 
                                  13-UNK   22-UNK   31-UNK


Chain X from PDB  Type:PROTEIN  Length:26
                                                          
               SCOP domains d1pyhx_ X:                 SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                 1pyh X  12 xxxxxxxxxxxxxxxxxxxxxxxxxx  37
                            ||||||||21||||||||31||||||
                            |||||||20-UNK|||29-UNK||||
                           12-UNK|||21-UNK|||30-UNK|||
                            13-UNK|| 22-UNK|| 31-UNK||
                             14-UNK|  23-UNK|  32-UNK|
                              15-UNK   24-UNK   33-UNK
                               16-UNK   25-UNK   34-UNK
                                17-UNK   26-UNK   35-UNK
                                 18-UNK   27-UNK   36-UNK
                                  19-UNK   28-UNK   37-UNK


Chain Y from PDB  Type:PROTEIN  Length:30
                                                              
               SCOP domains d1pyhy_ Y: RC-LH1 core complex SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                 1pyh Y   6 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  35
                            ||||||||15||||||||25||||||||35
                            |||||||14-UNK|||23-UNK|||32-UNK
                            6-UNK|||15-UNK|||24-UNK|||33-UNK
                             7-UNK|| 16-UNK|| 25-UNK|| 34-UNK
                              8-UNK|  17-UNK|  26-UNK|  35-UNK
                               9-UNK   18-UNK   27-UNK    
                               10-UNK   19-UNK   28-UNK   
                                11-UNK   20-UNK   29-UNK  
                                 12-UNK   21-UNK   30-UNK 
                                  13-UNK   22-UNK   31-UNK


Chain Z from PDB  Type:PROTEIN  Length:26
                                                          
               SCOP domains d1pyhz_ Z:                 SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                 1pyh Z  12 xxxxxxxxxxxxxxxxxxxxxxxxxx  37
                            ||||||||21||||||||31||||||
                            |||||||20-UNK|||29-UNK||||
                           12-UNK|||21-UNK|||30-UNK|||
                            13-UNK|| 22-UNK|| 31-UNK||
                             14-UNK|  23-UNK|  32-UNK|
                              15-UNK   24-UNK   33-UNK
                               16-UNK   25-UNK   34-UNK
                                17-UNK   26-UNK   35-UNK
                                 18-UNK   27-UNK   36-UNK
                                  19-UNK   28-UNK   37-UNK
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

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(-) SCOP Domains  (1, 34)

Asymmetric/Biological Unit
(-)
Class: Low resolution protein structures (283)

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