1PUM - JenaLib

Asymmetric Unit (29, 29)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ILE B:11 , ASN B:44 , NAG B:265 , GOL B:1016	BINDING SITE FOR RESIDUE NDG B 264
02	AC2	SOFTWARE	PHE A:214 , PRO A:217 , ILE B:11 , ASN B:44 , ASN B:136 , NDG B:264 , HOH B:1077	BINDING SITE FOR RESIDUE NAG B 265
03	AC3	SOFTWARE	TRP B:94 , ASN B:96 , TYR B:126 , LEU B:228 , NAG B:267 , GOL B:1019 , HOH B:1100	BINDING SITE FOR RESIDUE NAG B 266
04	AC4	SOFTWARE	TRP B:94 , NAG B:266 , GOL B:1021	BINDING SITE FOR RESIDUE NAG B 267
05	AC5	SOFTWARE	LYS A:90 , ASP A:91 , ASN A:112	BINDING SITE FOR RESIDUE NAG A 1004
06	AC6	SOFTWARE	ASP B:27 , PHE B:29 , ASN B:61 , FUL B:269 , HOH B:1082 , HOH B:1194	BINDING SITE FOR RESIDUE NAG B 268
07	AC7	SOFTWARE	NAG B:268	BINDING SITE FOR RESIDUE FUL B 269
08	AC8	SOFTWARE	ASP B:23 , VAL B:24 , ARG B:25 , ASP B:26 , ASP B:27 , GLN B:36 , TRP B:38 , LYS B:41 , ASN B:47 , HOH B:1150 , HOH B:1192	BINDING SITE FOR RESIDUE GAL B 1008
09	AC9	SOFTWARE	ASP B:235 , GLN B:238 , ILE B:247 , TYR B:249 , ASN B:256 , HOH B:1239	BINDING SITE FOR RESIDUE GAL B 1009
10	BC1	SOFTWARE	LEU A:4 , SER A:5	BINDING SITE FOR RESIDUE CL A 1026
11	BC2	SOFTWARE	HIS A:208 , ASN A:216	BINDING SITE FOR RESIDUE CL A 1027
12	BC3	SOFTWARE	GLY A:95 , ALA A:96 , GLU A:97 , THR A:98	BINDING SITE FOR RESIDUE SO4 A 1028
13	BC4	SOFTWARE	TYR A:76 , TYR A:115 , ILE A:160 , GLU A:165 , ARG A:168	BINDING SITE FOR RESIDUE SO4 A 1029
14	BC5	SOFTWARE	ARG A:41 , GLN A:42 , THR A:44 , ILE A:45	BINDING SITE FOR RESIDUE GOL A 1010
15	BC6	SOFTWARE	PRO A:171 , ARG A:175 , GLN A:178 , ASP B:150	BINDING SITE FOR RESIDUE GOL A 1011
16	BC7	SOFTWARE	SER A:148 , THR A:149 , ARG A:150 , ASN B:105	BINDING SITE FOR RESIDUE GOL A 1012
17	BC8	SOFTWARE	ARG A:234 , ASP A:235 , GOL A:1024 , LEU B:133 , LEU B:176 , TYR B:177 , GLY B:178	BINDING SITE FOR RESIDUE GOL B 1013
18	BC9	SOFTWARE	GLY A:63 , ASP A:64 , SER A:65 , ARG A:143	BINDING SITE FOR RESIDUE GOL A 1014
19	CC1	SOFTWARE	GLU B:142 , GLU B:170 , ARG B:173 , LYS B:185	BINDING SITE FOR RESIDUE GOL B 1015
20	CC2	SOFTWARE	PRO B:46 , LEU B:49 , THR B:51 , ARG B:59 , SER B:60 , ASN B:61 , NDG B:264 , HOH B:1030	BINDING SITE FOR RESIDUE GOL B 1016
21	CC3	SOFTWARE	ASP A:84 , ARG A:143	BINDING SITE FOR RESIDUE GOL A 1017
22	CC4	SOFTWARE	THR A:59 , ARG B:196 , SER B:198	BINDING SITE FOR RESIDUE GOL B 1018
23	CC5	SOFTWARE	ASN B:96 , ASN B:227 , LEU B:228 , GLY B:231 , NAG B:266 , HOH B:1221	BINDING SITE FOR RESIDUE GOL B 1019
24	CC6	SOFTWARE	ARG A:177 , GLY B:147 , PHE B:148 , ARG B:149 , ASP B:150 , PRO B:255 , MET B:258	BINDING SITE FOR RESIDUE GOL B 1020
25	CC7	SOFTWARE	GLN B:92 , TRP B:94 , PRO B:102 , ASN B:105 , NAG B:267	BINDING SITE FOR RESIDUE GOL B 1021
26	CC8	SOFTWARE	ARG B:59 , ASN B:82 , ARG B:86 , HOH B:1090	BINDING SITE FOR RESIDUE GOL B 1022
27	CC9	SOFTWARE	PRO A:129 , GLN A:134 , HOH A:7792 , HOH A:7835 , PHE B:79 , ALA B:84 , VAL B:85 , HOH B:1049	BINDING SITE FOR RESIDUE GOL B 1023
28	DC1	SOFTWARE	VAL A:228 , ARG A:234 , ASP A:235 , ARG B:141 , PRO B:261 , GOL B:1013 , HOH B:1105	BINDING SITE FOR RESIDUE GOL A 1024
29	DC2	SOFTWARE	GLU A:119 , HIS A:124 , ARG A:125 , ASP A:126	BINDING SITE FOR RESIDUE GOL A 1025

SS Bonds (4, 4)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (19, 19)

Asymmetric/Biological Unit (19, 19)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_ML1_VISAL_001 *	E	48	D	ML1_VISAL	---	---	A	A	15	D
02	UniProt	VAR_ML1_VISAL_013 *	N	319	S	ML1_VISAL	---	---	B	N	18	S
03	UniProt	VAR_ML1_VISAL_014 *	G	357	N	ML1_VISAL	---	---	B	G	56	N
04	UniProt	VAR_ML1_VISAL_002 *	N	145	T	ML1_VISAL	---	---	A	N	112	T
05	UniProt	VAR_ML1_VISAL_003 *	P	149	T	ML1_VISAL	---	---	A	P	116	T
06	UniProt	VAR_ML1_VISAL_004 *	T	173	S	ML1_VISAL	---	---	A	T	140	S
07	UniProt	VAR_ML1_VISAL_005 *	F	177	Y	ML1_VISAL	---	---	A	F	144	Y
08	UniProt	VAR_ML1_VISAL_006 *	T	184	A	ML1_VISAL	---	---	A	T	151	A
09	UniProt	VAR_ML1_VISAL_015 *	G	458	Q	ML1_VISAL	---	---	B	G	157	Q
10	UniProt	VAR_ML1_VISAL_007 *	Y	212	D	ML1_VISAL	---	---	A	Y	179	D
11	UniProt	VAR_ML1_VISAL_008 *	A	217	E	ML1_VISAL	---	---	A	A	184	E
12	UniProt	VAR_ML1_VISAL_009 *	V	223	M	ML1_VISAL	---	---	A	V	190	M
13	UniProt	VAR_ML1_VISAL_016 *	C	495	V	ML1_VISAL	---	---	B	N	194	V
14	UniProt	VAR_ML1_VISAL_010 *	I	251	F	ML1_VISAL	---	---	A	I	218	F
15	UniProt	VAR_ML1_VISAL_017 *	G	524	Y	ML1_VISAL	---	---	B	G	223	Y
16	UniProt	VAR_ML1_VISAL_018 *	N	531	S	ML1_VISAL	---	---	B	N	230	S
17	UniProt	VAR_ML1_VISAL_019 *	N	531	T	ML1_VISAL	---	---	B	N	230	T
18	UniProt	VAR_ML1_VISAL_011 *	T	264	S	ML1_VISAL	---	---	A	T	231	S
19	UniProt	VAR_ML1_VISAL_012 *	D	268	S	ML1_VISAL	---	---	A	D	235	S
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:249
 aligned with ML1_VISAL | P81446 from UniProtKB/Swiss-Prot  Length:564

    Alignment length:249
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273         
           ML1_VISAL     34 YERLRLRVTHQTTGEEYFRFITLLRDYVSSGSFSNEIPLLRQSTIPVSDAQRFVLVELTNEGGDSITAAIDVTNLYVVAYQAGDQSYFLRDAPRGAETHLFTGTTRSSLPFNGSYPDLERYAGHRDQIPLGIDQLIQSVTALRFPGGSTRTQARSILILIQMISEAARFNPILWRARQYINSGASFLPDVYMLELETSWGQQSTQVQQSTDGVFNNPIRLAIPPGNFVTLTNVRDVIASLAIMLFVCGE  282
               SCOP domains d1puma_ A: Mistletoe lectin I A-chain                                                                                                                                                                                                                     SCOP domains
               CATH domains 1pumA01 A:1-167 Ricin (A subunit), domain 1                                                                                                                            1pumA02 A:168-247 Ricin (A Subunit), domain 2                                   -- CATH domains
               Pfam domains -----RIP-1pumA01 A:6-209                                                                                                                                                                                         ---------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhhhhhhhhhhhhhhheeeeee..eeee............eeeeeeee....eeeeeee.....eeeeee..eeee......hhhhh.....eeee.....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh...eeeeeeeee.....eeeeeehhhhh............ Sec.struct. author
                 SAPs(SNPs) --------------D------------------------------------------------------------------------------------------------T---T-----------------------S---Y------A---------------------------D----E-----M---------------------------F------------S---S-------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1pum A    1 YERLSLRTVQQTTGAEYFSFITLLRDFVSSGSFSNQIPLLRQSTIPVSEGQRFVLVELTNAGGDSITAAIDVTNLYVVAYRAGDQSYFLKDAPAGAETQDFAGTTRSSLPFNGSYPDLERYAGHRDQIPLGIDQLIASVTALRFPGGSTRTQARSILILIQMISEAARFNPILWRARQYINSGASFLPDVYMLELETSWGQQSTQVQHSTDGVFNNPIALALSPGSVVTLTNVRDVIASLAIMLFVCGE  249
                                    10        20        30        40        50        60        70        80        90  |||  100       110       120       130       140       150       160       170       180       190       200       210       220       230       240         
                                                                                                                       93||                                                                                                                                                          
                                                                                                                      7777|                                                                                                                                                          
                                                                                                                         95

Chain B from PDB  Type:PROTEIN  Length:263
 aligned with ML1_VISAL | P81446 from UniProtKB/Swiss-Prot  Length:564

    Alignment length:263
                                   311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561   
           ML1_VISAL    302 DDVTCSASEPTVRIVGRNGMCVDVRDDDFHDGNQIQLWPSKSNNDPNQLWTIKRDGTIRSNGSCLTTYGYTAGVYVMIFDCNTAVREATLWEIWGNGTIINPRSNLVLAASSGIKGTTLTVQTLDYTLGQGWLAGNDTAPREVTIYGFRDLCMESNGGSVWVETCVISQQNQRWALYGDGSIRPKQNQDQCLTCGRDSVSTVINIVSCSAGSSGQRWVFTNEGAILNLKNGLAMDVAQANPKLRRIIIYPATGKPNQMWLPVP  564
               SCOP domains d1pumb1 B:1-137 Plant cytotoxin B-chain (lectin)                                                                                         d1pumb2 B:138-263 Plant cytotoxin B-chain (lectin)                                                                             SCOP domains
               CATH domains -1pumB01 B:2-139  [code=2.80.10.50, no name defined]                                                                                       1pumB02 B:140-263  [code=2.80.10.50, no name defined]                                                                        CATH domains
           Pfam domains (1) ------------------------------------------------------------------------------------------------------------------------------------------Ricin_B_lectin-1pumB01 B:139-259                                                                                         ---- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------------------------------------------------------Ricin_B_lectin-1pumB02 B:139-259                                                                                         ---- Pfam domains (2)
         Sec.struct. author ..........ee.eehhhhheeee.hhh......eeee......hhhhheee.....eee..eeeee........eeee.....hhhhhh.ee.....eee....eeee..........eee....hhhhh.ee......eeeeeehhhhheeeee..eeeee.....hhh.eeee.....eee.....eeee..........eeee....hhhh.eee.....eee.....eeee.hhhhhhh.eeee....hhhhh.eee. Sec.struct. author
             SAPs(SNPs) (1) -----------------S-------------------------------------N----------------------------------------------------------------------------------------------------Q------------------------------------V----------------------------Y------S--------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------- SAPs(SNPs) (2)
                    PROSITE -------RICIN_B_LECTIN  PDB: B:8-135 UniProt: 309-436                                                                                   ---RICIN_B_LECTIN  PDB: B:139-262 UniProt: 440-563                                                                             - PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1pum B    1 DDVTCSASEPIVRIVGRNGMTVDVRDDDFQDGNQIQLWPSKSNNDPNQLWTIKKDGTIRSNGSCLTTYGYTAGVYVMIFDCNTAVREATIWQIWGNGTIINPRSNLVLAASSGIKGTTLTVQTLDYTLGQGWLAGNDTAPREVTIYGFRDLCMESAGGSVWVETCTAGQENQRWALYGDGSIRPKQNQSQCLTNGRDSVSTVINIVSCSAGSSGQRWVFTNAGAILNLKNGLAMDVAQANPALARIIIYPATGNPNQMWLPVP  263
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 3)

CATH Domains (3, 4)

Pfam Domains (2, 3)

Gene Ontology (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (ML1_VISAL | P81446)

molecular function
	GO:0030246	carbohydrate binding	Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0030598	rRNA N-glycosylase activity	Catalysis of the hydrolysis of the N-glycosylic bond at A-4324 in 28S rRNA from rat ribosomes or corresponding sites in 28S RNA from other species.
biological process
	GO:0006952	defense response	Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
	GO:0017148	negative regulation of translation	Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.

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	Cis Peptide Bonds
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	1pum
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (7, 29)

Sites (29, 29)