1M2T - JenaLib

Asymmetric Unit (17, 17)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:112 , ASP A:117 , FUC A:501 , NAG A:502 , HOH A:9651 , HOH A:9705	BINDING SITE FOR RESIDUE NAG A 500
02	AC2	SOFTWARE	NAG A:500 , NAG A:502	BINDING SITE FOR RESIDUE FUC A 501
03	AC3	SOFTWARE	NAG A:500 , FUC A:501 , HOH A:9651	BINDING SITE FOR RESIDUE NAG A 502
04	AC4	SOFTWARE	ASP B:274 , PHE B:276 , ASN B:308 , FUC B:601 , HOH B:740 , HOH B:963	BINDING SITE FOR RESIDUE NAG B 600
05	AC5	SOFTWARE	NAG B:600	BINDING SITE FOR RESIDUE FUC B 601
06	AC6	SOFTWARE	TRP B:341 , ASN B:343 , TYR B:373 , HOH B:847 , HOH B:848 , HOH B:850 , HOH B:919 , HOH B:934 , HOH B:952 , HOH B:961 , HOH B:962 , HOH B:985	BINDING SITE FOR RESIDUE NAG B 602
07	AC7	SOFTWARE	PHE A:214 , PRO A:217 , ILE B:258 , VAL B:259 , ASN B:291 , ASN B:383 , NAG B:604 , HOH B:716 , HOH B:878 , HOH B:937	BINDING SITE FOR RESIDUE NAG B 603
08	AC8	SOFTWARE	ILE B:258 , ASN B:291 , LEU B:296 , NAG B:603 , HOH B:878 , HOH B:960	BINDING SITE FOR RESIDUE NAG B 604
09	AC9	SOFTWARE	LEU A:75 , TYR A:76 , VAL A:77 , GLY A:113 , ILE A:160 , SER A:164 , ARG A:168	BINDING SITE FOR RESIDUE ADE A 9550
10	BC1	SOFTWARE	GLY A:63 , THR A:65 , GLY A:83 , ARG A:143 , HOH A:9648	BINDING SITE FOR RESIDUE GOL A 600
11	BC2	SOFTWARE	GLN A:148 , THR A:149 , LYS A:150 , ASN B:352	BINDING SITE FOR RESIDUE GOL A 601
12	BC3	SOFTWARE	PRO A:171 , TRP A:174 , ARG A:175 , GLN A:178 , HOH B:993	BINDING SITE FOR RESIDUE GOL A 700
13	BC4	SOFTWARE	ASP B:482 , VAL B:483 , ALA B:484 , GLN B:485 , TYR B:496 , ASN B:503 , HOH B:938	BINDING SITE FOR RESIDUE GOL B 701
14	BC5	SOFTWARE	ARG A:234 , ASP A:235 , HOH A:9583 , HOH A:9586 , ARG B:388 , TYR B:424	BINDING SITE FOR RESIDUE GOL A 702
15	BC6	SOFTWARE	ASP B:270 , VAL B:271 , ARG B:272 , ASP B:273 , ASP B:274 , GLN B:283 , TRP B:285 , LYS B:288 , ASN B:294 , HOH B:951	BINDING SITE FOR RESIDUE GOL B 703
16	BC7	SOFTWARE	ARG A:177 , HOH A:9560 , GLY B:394 , PHE B:395 , ARG B:396 , ASP B:397 , PRO B:502 , MET B:505	BINDING SITE FOR RESIDUE GOL B 704
17	BC8	SOFTWARE	GLN A:134 , PHE B:326 , ALA B:331 , VAL B:332 , HOH B:751 , HOH B:898 , HOH B:939	BINDING SITE FOR RESIDUE GOL B 705

SS Bonds (4, 4)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (19, 19)

Asymmetric/Biological Unit (19, 19)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_ML1_VISAL_001 *	E	48	D	ML1_VISAL	---	---	A	A	15	D
02	UniProt	VAR_ML1_VISAL_002 *	N	145	T	ML1_VISAL	---	---	A	N	112	T
03	UniProt	VAR_ML1_VISAL_003 *	P	149	T	ML1_VISAL	---	---	A	P	116	T
04	UniProt	VAR_ML1_VISAL_004 *	T	173	S	ML1_VISAL	---	---	A	T	140	S
05	UniProt	VAR_ML1_VISAL_005 *	F	177	Y	ML1_VISAL	---	---	A	F	144	Y
06	UniProt	VAR_ML1_VISAL_006 *	T	184	A	ML1_VISAL	---	---	A	T	151	A
07	UniProt	VAR_ML1_VISAL_007 *	Y	212	D	ML1_VISAL	---	---	A	Y	179	D
08	UniProt	VAR_ML1_VISAL_008 *	A	217	E	ML1_VISAL	---	---	A	A	184	E
09	UniProt	VAR_ML1_VISAL_009 *	V	223	M	ML1_VISAL	---	---	A	V	190	M
10	UniProt	VAR_ML1_VISAL_010 *	I	251	F	ML1_VISAL	---	---	A	I	218	F
11	UniProt	VAR_ML1_VISAL_011 *	T	264	S	ML1_VISAL	---	---	A	T	231	S
12	UniProt	VAR_ML1_VISAL_012 *	D	268	S	ML1_VISAL	---	---	A	D	235	S
13	UniProt	VAR_ML1_VISAL_013 *	N	319	S	ML1_VISAL	---	---	B	N	265	S
14	UniProt	VAR_ML1_VISAL_014 *	G	357	N	ML1_VISAL	---	---	B	G	303	N
15	UniProt	VAR_ML1_VISAL_015 *	G	458	Q	ML1_VISAL	---	---	B	G	404	Q
16	UniProt	VAR_ML1_VISAL_016 *	C	495	V	ML1_VISAL	---	---	B	N	441	V
17	UniProt	VAR_ML1_VISAL_017 *	G	524	Y	ML1_VISAL	---	---	B	G	470	Y
18	UniProt	VAR_ML1_VISAL_018 *	N	531	S	ML1_VISAL	---	---	B	N	477	S
19	UniProt	VAR_ML1_VISAL_019 *	N	531	T	ML1_VISAL	---	---	B	N	477	T
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:248
 aligned with ML1_VISAL | P81446 from UniProtKB/Swiss-Prot  Length:564

    Alignment length:248
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273        
            ML1_VISAL    34 YERLRLRVTHQTTGEEYFRFITLLRDYVSSGSFSNEIPLLRQSTIPVSDAQRFVLVELTNEGGDSITAAIDVTNLYVVAYQAGDQSYFLRDAPRGAETHLFTGTTRSSLPFNGSYPDLERYAGHRDQIPLGIDQLIQSVTALRFPGGSTRTQARSILILIQMISEAARFNPILWRARQYINSGASFLPDVYMLELETSWGQQSTQVQQSTDGVFNNPIRLAIPPGNFVTLTNVRDVIASLAIMLFVCG 281
               SCOP domains d1m2ta_ A: Mistletoe lectin I A-chain                                                                                                                                                                                                                    SCOP domains
               CATH domains 1m2tA01 A:1-167 Ricin (A subunit), domain 1                                                                                                                            1m2tA02 A:168-248 Ricin (A Subunit), domain 2                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhhhhhhhhhhhhhhheeeeee..eeee............eeeeeeee....eeeeeee.....eeeeee..eeee......hhhhh.....eeee.....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh....eeeeeeeeee...eeeeeee.hhh............ Sec.struct. author
                 SAPs(SNPs) --------------D------------------------------------------------------------------------------------------------T---T-----------------------S---Y------A---------------------------D----E-----M---------------------------F------------S---S------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m2t A   1 YERLRLRTDQQTTGAEYFSFITVLRDYVSSGSFSNNIPLLRQSTVPVSEGQRFVLVELTNAGGDTITAAIDVTNLYVVAYEAGNQSYFLSDAPAGAETQDFSGTTSSSQPFNGSYPDLERYAGHRDQIPLGIDQLIQSVTALRFPGGQTKTQARSILILIQMISEAARFNPILWRARQYINSGASFLPDVYMLELETSWGQQSTQVQHSTDGVFNNPIALAIAPGVIVTLTNIRDVIASLAIMLFVCG 248
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240

Chain B from PDB  Type:PROTEIN  Length:262
 aligned with ML1_VISAL | P81446 from UniProtKB/Swiss-Prot  Length:564

    Alignment length:262
                                   312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562  
            ML1_VISAL   303 DVTCSASEPTVRIVGRNGMCVDVRDDDFHDGNQIQLWPSKSNNDPNQLWTIKRDGTIRSNGSCLTTYGYTAGVYVMIFDCNTAVREATLWEIWGNGTIINPRSNLVLAASSGIKGTTLTVQTLDYTLGQGWLAGNDTAPREVTIYGFRDLCMESNGGSVWVETCVISQQNQRWALYGDGSIRPKQNQDQCLTCGRDSVSTVINIVSCSAGSSGQRWVFTNEGAILNLKNGLAMDVAQANPKLRRIIIYPATGKPNQMWLPVP 564
               SCOP domains d1m2tb1 B:249-384 Plant cytotoxin B-chain (lectin)                                                                                      d1m2tb2 B:385-510 Plant cytotoxin B-chain (lectin)                                                                             SCOP domains
               CATH domains 1m2tB01 B:249-386  [code=2.80.10.50, no name defined]                                                                                     1m2tB02 B:387-510  [code=2.80.10.50, no name defined]                                                                        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........ee.eehhhhheeee.hhh......eeee......hhhhheee.....eee..eeeee........eeeee....hhhhhh.ee.....eee....eeee..........eee....hhhhh.ee......eeeeeehhhhheeeee..eeeee.....hhhh.eee.....eee.....eeee..........eeee....hhhh.eee.....eee.....eeee.hhhhhhh.eeee....hhhhh.eee. Sec.struct. author
             SAPs(SNPs) (1) ----------------S-------------------------------------N----------------------------------------------------------------------------------------------------Q------------------------------------V----------------------------Y------S--------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------- SAPs(SNPs) (2)
                    PROSITE ------RICIN_B_LECTIN  PDB: B:255-382 UniProt: 309-436                                                                                 ---RICIN_B_LECTIN  PDB: B:386-509 UniProt: 440-563                                                                             - PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m2t B 249 AVTCTASEPIVRIVGRNGMTVDVRDDDFHDGNQIQLWPSKSNNDPNQLWTIKKDGTIRSNGSCLTTYGYTAGVYVMIFDCNTAVREATIWQIWGNGTIINPRSNLVLAASSGIKGTTLTVQTLDYTLGQGWLAGNDTAPRETTIYGFRDLCMESAGGSVYVETCTAGQENQRWALYGDGSIRPKQLQSQCLTNGRDSISTVINIVSCSAGSSGQRWVFTNEGAILNLKNGLAMDVAQANPSLQRIIIYPATGNPNQMWLPVP 510
                                   258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 3)

CATH Domains (3, 4)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (ML1_VISAL | P81446)

molecular function
	GO:0030246	carbohydrate binding	Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0030598	rRNA N-glycosylase activity	Catalysis of the hydrolysis of the N-glycosylic bond at A-4324 in 28S rRNA from rat ribosomes or corresponding sites in 28S RNA from other species.
biological process
	GO:0006952	defense response	Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
	GO:0017148	negative regulation of translation	Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1m2t)

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	1m2t
		Family and Domain Information	:	ProDom \| SYSTERS
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	ML1_VISAL \| P81446
		Comparative Protein Structure Models	:	ModBase
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	3.2.2.22
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 17)

Sites (17, 17)