1ONK - JenaLib

Asymmetric Unit (20, 20)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PHE A:214 , THR B:11 , ASN B:44 , ASN B:136 , HOH B:3115 , HOH B:3168 , HOH B:3314	BINDING SITE FOR RESIDUE NAG B 5001
02	AC2	SOFTWARE	TRP B:94 , ASN B:96 , TYR B:126 , LEU B:228 , HOH B:3124 , HOH B:3175 , HOH B:3238 , HOH B:3341 , GOL B:4017	BINDING SITE FOR RESIDUE NAG B 5002
03	AC3	SOFTWARE	GLU A:119 , HIS A:124 , ARG A:125 , ASP A:126	BINDING SITE FOR RESIDUE PO4 A 4001
04	AC4	SOFTWARE	PHE B:29 , ASN B:61 , HOH B:3140 , HOH B:3143	BINDING SITE FOR RESIDUE AZI B 4002
05	AC5	SOFTWARE	ASN A:112	BINDING SITE FOR RESIDUE AZI A 4003
06	AC6	SOFTWARE	HIS B:30 , ASP B:31	BINDING SITE FOR RESIDUE AZI B 4004
07	AC7	SOFTWARE	ALA B:84 , VAL B:85 , HOH B:3149	BINDING SITE FOR RESIDUE AZI B 4005
08	AC8	SOFTWARE	ASP A:211 , ASN A:232 , HOH A:3257 , HOH A:3275 , ILE B:93 , TRP B:132 , LEU B:133 , ALA B:134	BINDING SITE FOR RESIDUE AZI A 4006
09	AC9	SOFTWARE	VAL B:218 , PHE B:219 , HOH B:3151 , HOH B:3153	BINDING SITE FOR RESIDUE AZI B 4007
10	BC1	SOFTWARE	ASP B:235 , ILE B:247 , TYR B:249 , ASN B:256	BINDING SITE FOR RESIDUE AZI B 4008
11	BC2	SOFTWARE	GLN A:178 , HOH A:3340 , ASP B:150	BINDING SITE FOR RESIDUE AZI A 4009
12	BC3	SOFTWARE	GLY A:83 , ASP A:84 , ARG A:143	BINDING SITE FOR RESIDUE AZI A 4010
13	BC4	SOFTWARE	LEU A:55	BINDING SITE FOR RESIDUE GOL A 4011
14	BC5	SOFTWARE	SER A:30 , ARG A:41 , GLN A:42	BINDING SITE FOR RESIDUE GOL A 4012
15	BC6	SOFTWARE	ARG A:143 , HOH A:3042	BINDING SITE FOR RESIDUE GOL A 4013
16	BC7	SOFTWARE	GLY A:95 , GLU A:97 , THR A:98	BINDING SITE FOR RESIDUE GOL A 4014
17	BC8	SOFTWARE	ARG A:175 , ASP A:189 , TYR A:191 , ILE A:222 , VAL B:262	BINDING SITE FOR RESIDUE GOL A 4015
18	BC9	SOFTWARE	ASP B:23 , VAL B:24 , ARG B:25 , ASP B:26 , GLN B:36 , TRP B:38 , LYS B:41 , ASN B:47 , HOH B:3107 , HOH B:3207	BINDING SITE FOR RESIDUE GOL B 4016
19	CC1	SOFTWARE	ASN B:96 , LEU B:228 , HOH B:3243 , NAG B:5002	BINDING SITE FOR RESIDUE GOL B 4017
20	CC2	SOFTWARE	ARG A:154 , TYR B:68 , ALA B:72 , GLN B:122 , THR B:123 , HOH B:3103 , HOH B:3182 , HOH B:3187	BINDING SITE FOR RESIDUE GOL B 4018

SS Bonds (4, 4)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (19, 19)

Asymmetric Unit (19, 19)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_ML1_VISAL_001 *	E	48	D	ML1_VISAL	---	---	A	E	15	D
02	UniProt	VAR_ML1_VISAL_013 *	N	319	S	ML1_VISAL	---	---	B	N	18	S
03	UniProt	VAR_ML1_VISAL_014 *	G	357	N	ML1_VISAL	---	---	B	G	56	N
04	UniProt	VAR_ML1_VISAL_002 *	N	145	T	ML1_VISAL	---	---	A	N	112	T
05	UniProt	VAR_ML1_VISAL_003 *	P	149	T	ML1_VISAL	---	---	A	P	116	T
06	UniProt	VAR_ML1_VISAL_004 *	T	173	S	ML1_VISAL	---	---	A	T	140	S
07	UniProt	VAR_ML1_VISAL_005 *	F	177	Y	ML1_VISAL	---	---	A	F	144	Y
08	UniProt	VAR_ML1_VISAL_006 *	T	184	A	ML1_VISAL	---	---	A	T	151	A
09	UniProt	VAR_ML1_VISAL_015 *	G	458	Q	ML1_VISAL	---	---	B	G	157	Q
10	UniProt	VAR_ML1_VISAL_007 *	Y	212	D	ML1_VISAL	---	---	A	Y	179	D
11	UniProt	VAR_ML1_VISAL_008 *	A	217	E	ML1_VISAL	---	---	A	A	184	E
12	UniProt	VAR_ML1_VISAL_009 *	V	223	M	ML1_VISAL	---	---	A	V	190	M
13	UniProt	VAR_ML1_VISAL_016 *	C	495	V	ML1_VISAL	---	---	B	S	194	V
14	UniProt	VAR_ML1_VISAL_010 *	I	251	F	ML1_VISAL	---	---	A	I	218	F
15	UniProt	VAR_ML1_VISAL_017 *	G	524	Y	ML1_VISAL	---	---	B	G	223	Y
16	UniProt	VAR_ML1_VISAL_018 *	N	531	S	ML1_VISAL	---	---	B	N	230	S
17	UniProt	VAR_ML1_VISAL_019 *	N	531	T	ML1_VISAL	---	---	B	N	230	T
18	UniProt	VAR_ML1_VISAL_011 *	T	264	S	ML1_VISAL	---	---	A	T	231	S
19	UniProt	VAR_ML1_VISAL_012 *	D	268	S	ML1_VISAL	---	---	A	D	235	S
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (19, 38)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_ML1_VISAL_001 *	E	48	D	ML1_VISAL	---	---	A	E	15	D
02	UniProt	VAR_ML1_VISAL_013 *	N	319	S	ML1_VISAL	---	---	B	N	18	S
03	UniProt	VAR_ML1_VISAL_014 *	G	357	N	ML1_VISAL	---	---	B	G	56	N
04	UniProt	VAR_ML1_VISAL_002 *	N	145	T	ML1_VISAL	---	---	A	N	112	T
05	UniProt	VAR_ML1_VISAL_003 *	P	149	T	ML1_VISAL	---	---	A	P	116	T
06	UniProt	VAR_ML1_VISAL_004 *	T	173	S	ML1_VISAL	---	---	A	T	140	S
07	UniProt	VAR_ML1_VISAL_005 *	F	177	Y	ML1_VISAL	---	---	A	F	144	Y
08	UniProt	VAR_ML1_VISAL_006 *	T	184	A	ML1_VISAL	---	---	A	T	151	A
09	UniProt	VAR_ML1_VISAL_015 *	G	458	Q	ML1_VISAL	---	---	B	G	157	Q
10	UniProt	VAR_ML1_VISAL_007 *	Y	212	D	ML1_VISAL	---	---	A	Y	179	D
11	UniProt	VAR_ML1_VISAL_008 *	A	217	E	ML1_VISAL	---	---	A	A	184	E
12	UniProt	VAR_ML1_VISAL_009 *	V	223	M	ML1_VISAL	---	---	A	V	190	M
13	UniProt	VAR_ML1_VISAL_016 *	C	495	V	ML1_VISAL	---	---	B	S	194	V
14	UniProt	VAR_ML1_VISAL_010 *	I	251	F	ML1_VISAL	---	---	A	I	218	F
15	UniProt	VAR_ML1_VISAL_017 *	G	524	Y	ML1_VISAL	---	---	B	G	223	Y
16	UniProt	VAR_ML1_VISAL_018 *	N	531	S	ML1_VISAL	---	---	B	N	230	S
17	UniProt	VAR_ML1_VISAL_019 *	N	531	T	ML1_VISAL	---	---	B	N	230	T
18	UniProt	VAR_ML1_VISAL_011 *	T	264	S	ML1_VISAL	---	---	A	T	231	S
19	UniProt	VAR_ML1_VISAL_012 *	D	268	S	ML1_VISAL	---	---	A	D	235	S
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (19, 19)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_ML1_VISAL_001 *	E	48	D	ML1_VISAL	---	---	A	E	15	D
02	UniProt	VAR_ML1_VISAL_013 *	N	319	S	ML1_VISAL	---	---	B	N	18	S
03	UniProt	VAR_ML1_VISAL_014 *	G	357	N	ML1_VISAL	---	---	B	G	56	N
04	UniProt	VAR_ML1_VISAL_002 *	N	145	T	ML1_VISAL	---	---	A	N	112	T
05	UniProt	VAR_ML1_VISAL_003 *	P	149	T	ML1_VISAL	---	---	A	P	116	T
06	UniProt	VAR_ML1_VISAL_004 *	T	173	S	ML1_VISAL	---	---	A	T	140	S
07	UniProt	VAR_ML1_VISAL_005 *	F	177	Y	ML1_VISAL	---	---	A	F	144	Y
08	UniProt	VAR_ML1_VISAL_006 *	T	184	A	ML1_VISAL	---	---	A	T	151	A
09	UniProt	VAR_ML1_VISAL_015 *	G	458	Q	ML1_VISAL	---	---	B	G	157	Q
10	UniProt	VAR_ML1_VISAL_007 *	Y	212	D	ML1_VISAL	---	---	A	Y	179	D
11	UniProt	VAR_ML1_VISAL_008 *	A	217	E	ML1_VISAL	---	---	A	A	184	E
12	UniProt	VAR_ML1_VISAL_009 *	V	223	M	ML1_VISAL	---	---	A	V	190	M
13	UniProt	VAR_ML1_VISAL_016 *	C	495	V	ML1_VISAL	---	---	B	S	194	V
14	UniProt	VAR_ML1_VISAL_010 *	I	251	F	ML1_VISAL	---	---	A	I	218	F
15	UniProt	VAR_ML1_VISAL_017 *	G	524	Y	ML1_VISAL	---	---	B	G	223	Y
16	UniProt	VAR_ML1_VISAL_018 *	N	531	S	ML1_VISAL	---	---	B	N	230	S
17	UniProt	VAR_ML1_VISAL_019 *	N	531	T	ML1_VISAL	---	---	B	N	230	T
18	UniProt	VAR_ML1_VISAL_011 *	T	264	S	ML1_VISAL	---	---	A	T	231	S
19	UniProt	VAR_ML1_VISAL_012 *	D	268	S	ML1_VISAL	---	---	A	D	235	S
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:249
 aligned with ML1_VISAL | P81446 from UniProtKB/Swiss-Prot  Length:564

    Alignment length:249
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273         
            ML1_VISAL    34 YERLRLRVTHQTTGEEYFRFITLLRDYVSSGSFSNEIPLLRQSTIPVSDAQRFVLVELTNEGGDSITAAIDVTNLYVVAYQAGDQSYFLRDAPRGAETHLFTGTTRSSLPFNGSYPDLERYAGHRDQIPLGIDQLIQSVTALRFPGGSTRTQARSILILIQMISEAARFNPILWRARQYINSGASFLPDVYMLELETSWGQQSTQVQQSTDGVFNNPIRLAIPPGNFVTLTNVRDVIASLAIMLFVCGE 282
               SCOP domains d1onka_ A: Mistletoe lectin I A-chain                                                                                                                                                                                                                     SCOP domains
               CATH domains 1onkA01 A:1-167 Ricin (A subunit), domain 1                                                                                                                            1onkA02 A:168-248 Ricin (A Subunit), domain 2                                    - CATH domains
               Pfam domains -----RIP-1onkA01 A:6-209                                                                                                                                                                                         ---------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhhhhhhhhhhhhhhheeeeee..eeee............eeeeeeee....eeeeeee.....eeeeee..eeee................eeee.....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh...eeeeeeeeee...eeeeeeehhhhh............ Sec.struct. author
                 SAPs(SNPs) --------------D------------------------------------------------------------------------------------------------T---T-----------------------S---Y------A---------------------------D----E-----M---------------------------F------------S---S-------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1onk A   1 YERLRLRVTHQTTGEEYFRFITLLRDYVSSGSFSNEIPLLRQSTIPVSDAQRFVLVELTNQGQDSVTAAIDVTNAYVVAYQAGDQSYFLRDAPRGAETHLFTGTTRSSLPFNGSYPDLERYAGHRDQIPLGIDQLIQSVTALRFPGGSTRTQARSILILIQMISEAARFNPILWRYRQYINSGASFLPDVYMLELETSWGQQSTQVQHSTDGVFNNPIRLAIPPGNFVTLTNVRDVIASLAIMLFVCGE 249
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240

Chain B from PDB  Type:PROTEIN  Length:263
 aligned with ML1_VISAL | P81446 from UniProtKB/Swiss-Prot  Length:564

    Alignment length:263
                                   311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561   
            ML1_VISAL   302 DDVTCSASEPTVRIVGRNGMCVDVRDDDFHDGNQIQLWPSKSNNDPNQLWTIKRDGTIRSNGSCLTTYGYTAGVYVMIFDCNTAVREATLWEIWGNGTIINPRSNLVLAASSGIKGTTLTVQTLDYTLGQGWLAGNDTAPREVTIYGFRDLCMESNGGSVWVETCVISQQNQRWALYGDGSIRPKQNQDQCLTCGRDSVSTVINIVSCSAGSSGQRWVFTNEGAILNLKNGLAMDVAQANPKLRRIIIYPATGKPNQMWLPVP 564
               SCOP domains d1onkb1 B:1-137 Plant cytotoxin B-chain (lectin)                                                                                         d1onkb2 B:138-263 Plant cytotoxin B-chain (lectin)                                                                             SCOP domains
               CATH domains 1onkB01 B:1-139  [code=2.80.10.50, no name defined]                                                                                        1onkB02 B:140-263  [code=2.80.10.50, no name defined]                                                                        CATH domains
           Pfam domains (1) ------------------------------------------------------------------------------------------------------------------------------------------Ricin_B_lectin-1onkB01 B:139-259                                                                                         ---- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------------------------------------------------------Ricin_B_lectin-1onkB02 B:139-259                                                                                         ---- Pfam domains (2)
         Sec.struct. author ..........ee.eehhhhheeee.hhh......eeee......hhhhheee.....eee..eeeee........eeeee....hhhhhh.ee.....eee....eeee..........eee....hhhhh.ee......eeeeeehhh.eeeeee..eeeeee....hhh.eeee.....eee.....eeee..........eeee....hhhh.eee.....eee.....eeee.........eeee....hhhhh.eee. Sec.struct. author
             SAPs(SNPs) (1) -----------------S-------------------------------------N----------------------------------------------------------------------------------------------------Q------------------------------------V----------------------------Y------S--------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------- SAPs(SNPs) (2)
                    PROSITE -------RICIN_B_LECTIN  PDB: B:8-135 UniProt: 309-436                                                                                   ---RICIN_B_LECTIN  PDB: B:139-262 UniProt: 440-563                                                                             - PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1onk B   1 DDVTCSASEPTVRIVGRNGMRVDVRDDDFHDGNQIQLWPSKSNNDPNQLWTIKRDGTIRSNGSCLTTYGYTAGVYVMIFDCNTAVREATIWQIWDNGTIINPRSNLVLAASSGIKGTTLTVQTLDYTLGQGWLAGNDTAPREVTIYGFRDLCMESNGGSVWVETCDSSQKNQKWALYGDGSIRPKQNQDQCLTSGRDSVSTVINIVSCSGASGSQRWVFTNEGAILNLKNGLAMDVAQANPKLRRIIIYPATGKPNQMWLPVF 263
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 3)

CATH Domains (3, 4)

Pfam Domains (2, 3)

Gene Ontology (5, 5)

Asymmetric Unit(hide GO term definitions)

Chain A,B (ML1_VISAL | P81446)

molecular function
	GO:0030246	carbohydrate binding	Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0030598	rRNA N-glycosylase activity	Catalysis of the hydrolysis of the N-glycosylic bond at A-4324 in 28S rRNA from rat ribosomes or corresponding sites in 28S RNA from other species.
biological process
	GO:0006952	defense response	Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
	GO:0017148	negative regulation of translation	Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.

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		Gln B:238 - Ala B:239	[ RasMol ]

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	1onk
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	ML1_VISAL \| P81446
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	3.2.2.22
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 20)

Sites (20, 20)