1OV8 - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   AURACYANIN B STRUCTURE IN SPACE GROUP, P65

Authors :   M. Lee, M. J. Maher, H. C. Freeman, J. M. Guss

Date :   25 Mar 03 (Deposition) - 09 Sep 03 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: C,D  (1x)
Biol. Unit 6: A,B  (1x)

Keywords :   Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Lee, M. J. Maher, H. C. Freeman, J. M. Guss
Auracyanin B Structure In Space Group P6(5).
Acta Crystallogr. , Sect. D V. 59 1545 2003
PubMed-ID: 12925783 | Reference-DOI: 10.1107/S0907444903014161

Molecule 1 - AURACYANIN B
	Chains	:	A, B, C, D
	Fragment	:	N-TERMINAL SOLUBLE DOMAIN
	Organism Scientific	:	CHLOROFLEXUS AURANTIACUS
	Organism Taxid	:	1108
	Other Details	:	THERMOPHILIC GREEN PHOTOSYNTHETIC BACTERIUM
	Synonym	:	AC-B

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:			C	D
Biological Unit 6 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 11)

No.	Name	Count	Type	Full Name
1	CL	2	Ligand/Ion	CHLORIDE ION
2	CU	4	Ligand/Ion	COPPER (II) ION
3	SO4	5	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CU	-1	Ligand/Ion	COPPER (II) ION
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CU	-1	Ligand/Ion	COPPER (II) ION
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CU	-1	Ligand/Ion	COPPER (II) ION
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CU	-1	Ligand/Ion	COPPER (II) ION
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 5 (1, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CU	-1	Ligand/Ion	COPPER (II) ION
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 6 (1, 3)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CU	-1	Ligand/Ion	COPPER (II) ION
3	SO4	3	Ligand/Ion	SULFATE ION

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLN A:56 , HIS A:57 , CYS A:122 , HIS A:127 , MET A:132	BINDING SITE FOR RESIDUE CU A 150
02	AC2	SOFTWARE	GLN B:56 , HIS B:57 , CYS B:122 , HIS B:127 , MET B:132	BINDING SITE FOR RESIDUE CU B 151
03	AC3	SOFTWARE	GLN C:56 , HIS C:57 , CYS C:122 , HIS C:127 , MET C:132	BINDING SITE FOR RESIDUE CU C 152
04	AC4	SOFTWARE	GLN D:56 , HIS D:57 , CYS D:122 , HIS D:127 , MET D:132	BINDING SITE FOR RESIDUE CU D 153
05	AC5	SOFTWARE	VAL A:55 , HIS A:127 , HOH A:170 , VAL B:55 , HIS B:127 , HOH B:294	BINDING SITE FOR RESIDUE CL A 154
06	AC6	SOFTWARE	HIS C:127 , HOH C:449 , VAL D:55 , HIS D:127 , HOH D:577	BINDING SITE FOR RESIDUE CL C 155
07	AC7	SOFTWARE	GLY C:65 , ASP C:67 , VAL C:68	BINDING SITE FOR RESIDUE SO4 C 160
08	AC8	SOFTWARE	GLY B:65 , ASP B:66 , ASP B:67 , VAL B:68 , HOH B:438	BINDING SITE FOR RESIDUE SO4 B 161
09	AC9	SOFTWARE	GLY D:64 , GLY D:65 , ASP D:67 , VAL D:68	BINDING SITE FOR RESIDUE SO4 D 162
10	BC1	SOFTWARE	GLY A:65 , ASP A:67 , VAL A:68	BINDING SITE FOR RESIDUE SO4 A 163
11	BC2	SOFTWARE	ARG A:44 , HOH A:255 , HOH A:599 , ARG B:44 , HOH B:379 , HOH B:471 , ARG C:44 , HOH C:316 , HOH C:534 , ARG D:44 , HOH D:192 , HOH D:662	BINDING SITE FOR RESIDUE SO4 B 164

(no "SS Bond" information available for 1OV8)

(no "Cis Peptide Bond" information available for 1OV8)

(no "SAP(SNP)/Variant" information available for 1OV8)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_BLUE	PS00196	Type-1 copper (blue) proteins signature.	AURB_CHLAA	211-227	4	A:116-132 B:116-132 C:116-132 D:116-132
2	MULTICOPPER_OXIDASE1	PS00079	Multicopper oxidases signature 1.	AURB_CHLAA	211-231	4	A:116-136 B:116-136 C:116-136 D:116-136

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_BLUE	PS00196	Type-1 copper (blue) proteins signature.	AURB_CHLAA	211-227	1	A:116-132 - - -
2	MULTICOPPER_OXIDASE1	PS00079	Multicopper oxidases signature 1.	AURB_CHLAA	211-231	1	A:116-136 - - -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_BLUE	PS00196	Type-1 copper (blue) proteins signature.	AURB_CHLAA	211-227	1	- B:116-132 - -
2	MULTICOPPER_OXIDASE1	PS00079	Multicopper oxidases signature 1.	AURB_CHLAA	211-231	1	- B:116-136 - -

Biological Unit 3 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_BLUE	PS00196	Type-1 copper (blue) proteins signature.	AURB_CHLAA	211-227	1	- - C:116-132 -
2	MULTICOPPER_OXIDASE1	PS00079	Multicopper oxidases signature 1.	AURB_CHLAA	211-231	1	- - C:116-136 -

Biological Unit 4 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_BLUE	PS00196	Type-1 copper (blue) proteins signature.	AURB_CHLAA	211-227	1	- - - D:116-132
2	MULTICOPPER_OXIDASE1	PS00079	Multicopper oxidases signature 1.	AURB_CHLAA	211-231	1	- - - D:116-136

Biological Unit 5 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_BLUE	PS00196	Type-1 copper (blue) proteins signature.	AURB_CHLAA	211-227	2	- - C:116-132 D:116-132
2	MULTICOPPER_OXIDASE1	PS00079	Multicopper oxidases signature 1.	AURB_CHLAA	211-231	2	- - C:116-136 D:116-136

Biological Unit 6 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_BLUE	PS00196	Type-1 copper (blue) proteins signature.	AURB_CHLAA	211-227	2	A:116-132 B:116-132 - -
2	MULTICOPPER_OXIDASE1	PS00079	Multicopper oxidases signature 1.	AURB_CHLAA	211-231	2	A:116-136 B:116-136 - -

(no "Exon" information available for 1OV8)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:139
 aligned with AURB_CHLAA | P27197 from UniProtKB/Swiss-Prot  Length:235

    Alignment length:139
                                   106       116       126       136       146       156       166       176       186       196       206       216       226         
           AURB_CHLAA    97 ANAPGGSNVVNETPAQTVEVRAAPDALAFAQTSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVTP 235
               SCOP domains d1ov8a_ A: Auracyanin                                                                                                                       SCOP domains
               CATH domains 1ov8A00 A:2-140 Cupredoxins -  blue copper proteins                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeeee...........eeeee...eeeeeeee..........eee..hhhhhhhhhhhhhhhhhhh.........eeee.......eeeeeeee....eeeeee...........eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------------------------------------------------------------------------COPPER_BLUE      -------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------MULTICOPPER_OXIDASE1 ---- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ov8 A   2 ANAPGGSNVVNETPAQTVEVRAAPDALAFAQTSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVTP 140
                                    11        21        31        41        51        61        71        81        91       101       111       121       131

Chain B from PDB  Type:PROTEIN  Length:139
 aligned with AURB_CHLAA | P27197 from UniProtKB/Swiss-Prot  Length:235

    Alignment length:139
                                   106       116       126       136       146       156       166       176       186       196       206       216       226         
           AURB_CHLAA    97 ANAPGGSNVVNETPAQTVEVRAAPDALAFAQTSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVTP 235
               SCOP domains d1ov8b_ B: Auracyanin                                                                                                                       SCOP domains
               CATH domains 1ov8B00 B:2-140 Cupredoxins -  blue copper proteins                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeeee...........eeeee...eeeeeeee..........eee..hhhhhhhhhhhhhhhhhhh.........eeee.......eeeeeeee....eeeeee...........eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------------------------------------------------------------------------COPPER_BLUE      -------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------MULTICOPPER_OXIDASE1 ---- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ov8 B   2 ANAPGGSNVVNETPAQTVEVRAAPDALAFAQTSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVTP 140
                                    11        21        31        41        51        61        71        81        91       101       111       121       131

Chain C from PDB  Type:PROTEIN  Length:139
 aligned with AURB_CHLAA | P27197 from UniProtKB/Swiss-Prot  Length:235

    Alignment length:139
                                   106       116       126       136       146       156       166       176       186       196       206       216       226         
           AURB_CHLAA    97 ANAPGGSNVVNETPAQTVEVRAAPDALAFAQTSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVTP 235
               SCOP domains d1ov8c_ C: Auracyanin                                                                                                                       SCOP domains
               CATH domains 1ov8C00 C:2-140 Cupredoxins -  blue copper proteins                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeeee...........eeeee...eeeeeeee..........eee..hhhhhhhhhhhhhhhhhhh.........eeee.......eeeeeeee....eeeeee...........eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------------------------------------------------------------------------COPPER_BLUE      -------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------MULTICOPPER_OXIDASE1 ---- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ov8 C   2 ANAPGGSNVVNETPAQTVEVRAAPDALAFAQTSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVTP 140
                                    11        21        31        41        51        61        71        81        91       101       111       121       131

Chain D from PDB  Type:PROTEIN  Length:139
 aligned with AURB_CHLAA | P27197 from UniProtKB/Swiss-Prot  Length:235

    Alignment length:139
                                   106       116       126       136       146       156       166       176       186       196       206       216       226         
           AURB_CHLAA    97 ANAPGGSNVVNETPAQTVEVRAAPDALAFAQTSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVTP 235
               SCOP domains d1ov8d_ D: Auracyanin                                                                                                                       SCOP domains
               CATH domains 1ov8D00 D:2-140 Cupredoxins -  blue copper proteins                                                                                         CATH domains
           Pfam domains (1) ---------------Copper-bind-1ov8D01 D:17-139                                                                                               - Pfam domains (1)
           Pfam domains (2) ---------------Copper-bind-1ov8D02 D:17-139                                                                                               - Pfam domains (2)
           Pfam domains (3) ---------------Copper-bind-1ov8D03 D:17-139                                                                                               - Pfam domains (3)
           Pfam domains (4) ---------------Copper-bind-1ov8D04 D:17-139                                                                                               - Pfam domains (4)
         Sec.struct. author ...............eeeeee...........eeeee...eeeeeeee..........eee..hhhhhhhhhhhhhhhhhhh.........eeee.......eeeeeeee....eeeeee...........eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------------------------------------------------------------------------COPPER_BLUE      -------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------MULTICOPPER_OXIDASE1 ---- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ov8 D   2 ANAPGGSNVVNETPAQTVEVRAAPDALAFAQTSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVTP 140
                                    11        21        31        41        51        61        71        81        91       101       111       121       131

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	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Cupredoxin-like (545)

Superfamily: Cupredoxins (543)

Family: Plastocyanin/azurin-like (241)

Protein domain: Auracyanin (2)

Chloroflexus aurantiacus [TaxId: 1108] (2)

1a	d1ov8a_	A:
1b	d1ov8b_	B:
1c	d1ov8c_	C:
1d	d1ov8d_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Cupredoxins - blue copper proteins (420)

Chloroflexus aurantiacus. Organism_taxid: 1108. (2)

1a	1ov8A00	A:2-140
1b	1ov8B00	B:2-140
1c	1ov8C00	C:2-140
1d	1ov8D00	D:2-140

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: CU_oxidase (192)

Family: Copper-bind (82)

Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) (2)

1a	Copper-bind-1ov8D01	D:17-139
1b	Copper-bind-1ov8D02	D:17-139
1c	Copper-bind-1ov8D03	D:17-139
1d	Copper-bind-1ov8D04	D:17-139

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (AURB_CHLAA | P27197)

molecular function
	GO:0005507	copper ion binding	Interacting selectively and non-covalently with copper (Cu) ions.
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0009767	photosynthetic electron transport chain	A process, occurring as part of photosynthesis, in which light provides the energy for a series of electron carriers to operate together to transfer electrons and generate a transmembrane electrochemical gradient.
cellular component
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric Unit
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(no "Related Entries Specified in the PDB File" available for 1OV8)

Description

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Chains, Units

Ligands, Modified Residues, Ions (3, 11)

Sites (11, 11)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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