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(-) Description

Title :  FULL-LENGTH PAK PILIN FROM PSEUDOMONAS AERUGINOSA
 
Authors :  L. Craig, A. S. Arvai, K. T. Forest, J. A. Tainer
Date :  11 Mar 03  (Deposition) - 03 Jun 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Type Iv Pilin, Fiber-Forming Protein, Adhesion, Pseudomonas Aerugionosa, Pak Pilin, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Craig, R. K. Taylor, M. E. Pique, B. A. Adair, A. S. Arvai, M. Singh, S. J. Lloyd, D. S. Shin, E. D. Getzoff, M. Yeager, K. T. Forest, J. A. Tainer
Type Iv Pilin Structure And Assembly: X-Ray And Em Analyses Of Vibrio Cholerae Toxin-Coregulated Pilus And Pseudomonas Aeruginosa Pak Pilin
Mol. Cell V. 11 1139 2003
PubMed-ID: 12769840  |  Reference-DOI: 10.1016/S1097-2765(03)00170-9
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FIMBRIAL PROTEIN
    Chains: A, B
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Strain: K
    Synonym: PILIN, STRAIN PAK

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1OQW)

(-) Sites  (0, 0)

(no "Site" information available for 1OQW)

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:129 -A:142
2B:129 -B:142

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Lys A:88 -Pro A:89
2Asp A:90 -Pro A:91
3Lys B:88 -Pro B:89
4Asp B:90 -Pro B:91

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1OQW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1OQW)

(-) Exons   (0, 0)

(no "Exon" information available for 1OQW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:144
 aligned with FMPA_PSEAI | P02973 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:144
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146    
           FMPA_PSEAI     7 FTLIELMIVVAIIGILAAIAIPQYQNYVARSEGASALASVNPLKTTVEEALSRGWSVKSGTGTEDATKKEVPLGVAADANKLGTIALKPDPADGTADITLTFTMGGAGPKNKGKIITLTRTAADGLWKCTSDQDEQFIPKGCSR 150
               SCOP domains d1oqwa_ A: Type IV Pilin Pak                                                                                                                     SCOP domains
               CATH domains 1oqwA00 A:1-144 Glycoprotein, Type 4 Pilin                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee...........eee...........eeeee.........eeeeee...........eeeeee......eeeee..hhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1oqw A   1 FTLIELMIVVAIIGILAAIAIPQYQNYVARSEGASALASVNPLKTTVEEALSRGWSVKSGTGTEDATKKEVPLGVAADANKLGTIALKPDPADGTADITLTFTMGGAGPKNKGKIITLTRTAADGLWKCTSDQDEQFIPKGCSR 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain B from PDB  Type:PROTEIN  Length:144
 aligned with FMPA_PSEAI | P02973 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:144
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146    
           FMPA_PSEAI     7 FTLIELMIVVAIIGILAAIAIPQYQNYVARSEGASALASVNPLKTTVEEALSRGWSVKSGTGTEDATKKEVPLGVAADANKLGTIALKPDPADGTADITLTFTMGGAGPKNKGKIITLTRTAADGLWKCTSDQDEQFIPKGCSR 150
               SCOP domains d1oqwb_ B: Type IV Pilin Pak                                                                                                                     SCOP domains
               CATH domains 1oqwB00 B:1-144 Glycoprotein, Type 4 Pilin                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee...........eee...........eeeee.........eeeeee...........eeeeee......eeeee..hhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1oqw B   1 FTLIELMIVVAIIGILAAIAIPQYQNYVARSEGASALASVNPLKTTVEEALSRGWSVKSGTGTEDATKKEVPLGVAADANKLGTIALKPDPADGTADITLTFTMGGAGPKNKGKIITLTRTAADGLWKCTSDQDEQFIPKGCSR 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1OQW)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (FMPA_PSEAI | P02973)
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
cellular component
    GO:0009289    pilus    A proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter.

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  Cis Peptide Bonds
    Asp A:90 - Pro A:91   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FMPA_PSEAI | P02973: 1dzo 1nil 1nim 1paj 1pak 1x6p 1x6q 1x6r 1x6x 1x6y 1x6z 2py0 5vxy

(-) Related Entries Specified in the PDB File

1dzo TRUNCATED PAK PILIN FROM PSEUDOMONAS AERUGINOSA
1oqv STRUCTURE OF THE TYPE IV PILIN SUBUNIT FROM THE TOXIN CO- REGULATED PILUS OF VIBRIO CHOLERAE CLASSICAL BIOTYPE
1or9 MODEL FOR ASSEMBLY OF THE VIBRIO CHOLERAE TOXIN CO- REGULATED PILUS (TCP) BASED ON EM AND X-RAY CRYSTALLOGRAPHY
2pil CRYSTALLOGRAPHIC STRUCTURE OF PHOSPHORYLATED PILIN FROM NEISSERIA