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(-) Description

Title :  TRUNCATED PAK PILIN FROM PSEUDOMONAS AERUGINOSA
 
Authors :  B. Hazes, R. J. Read
Date :  06 Mar 00  (Deposition) - 11 Jun 00  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.63
Chains :  Asym./Biol. Unit :  A
Keywords :  Lectin, Adhesin, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Hazes, P. A. Sastry, K. Hayakawa, R. J. Read, R. T. Irvin
Crystal Structure Of Pseudomonas Aeruginosa Pak Pilin Suggests A Main-Chain-Dominated Mode Of Receptor Binding
J. Mol. Biol. V. 299 1005 2000
PubMed-ID: 10843854  |  Reference-DOI: 10.1006/JMBI.2000.3801

(-) Compounds

Molecule 1 - TYPE IV PILIN
    Cellular Location: EXTRACELLULAR FILAMENTOUS APPENDAGE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Cellular Location: PERIPLASMIC SPACE
    Expression System Plasmid: PRLD
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Fragment: GLOBULAR DOMAIN
    Gene: PILA
    Mutation: YES
    Organism Scientific: PSEUDOMONAS AERUGINOSA PAK
    Organism Taxid: 1009714
    Other Details: RESIDUES 22-28 ARE FROM THE EXPRESSION VECTOR. RESIDUES 29-144 ARE FROM THE MATURE PROTEIN.

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1DZO)

(-) Sites  (0, 0)

(no "Site" information available for 1DZO)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:129 -A:142

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Lys A:88 -Pro A:89
2Asp A:90 -Pro A:91

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:120
 aligned with FMPA_PSEAI | P02973 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:120
                                    40        50        60        70        80        90       100       110       120       130       140       150
           FMPA_PSEAI    31 QNYVARSEGASALASVNPLKTTVEEALSRGWSVKSGTGTEDATKKEVPLGVAADANKLGTIALKPDPADGTADITLTFTMGGAGPKNKGKIITLTRTAADGLWKCTSDQDEQFIPKGCSR 150
               SCOP domains d1dzoa_ A: Type IV Pilin Pak                                                                                             SCOP domains
               CATH domains 1dzoA00 A:25-144 Glycoprotein, Type 4 Pilin                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhh..eee...........eee...........eeeee.........eeeeee...........eeeeeee....eeeeee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 1dzo A  25 GTEFARSEGASALASVNPLKTTVEEALSRGWSVKSGTGTEDATKKEVPLGVAADANKLGTIALKPDPADGTADITLTFTMGGAGPKNKGKIITLTRTAADGLWKCTSDQDEQFIPKGCSR 144
                                    34        44        54        64        74        84        94       104       114       124       134       144
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1DZO)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (FMPA_PSEAI | P02973)
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
cellular component
    GO:0009289    pilus    A proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter.

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  Cis Peptide Bonds
    Asp A:90 - Pro A:91   [ RasMol ]  
    Lys A:88 - Pro A:89   [ RasMol ]  
 

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  1dzo
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  FMPA_PSEAI | P02973
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FMPA_PSEAI | P02973: 1nil 1nim 1oqw 1paj 1pak 1x6p 1x6q 1x6r 1x6x 1x6y 1x6z 2py0 5vxy

(-) Related Entries Specified in the PDB File

1nil 1nim 1paj 1pak