1OH4 - JenaLib

Title :   STRUCTURAL AND THERMODYNAMIC DISSECTION OF SPECIFIC MANNAN RECOGNITION BY A CARBOHYDRATE-BINDING MODULE

Authors :   A. B. Boraston, T. J. Revett, C. M. Boraston, D. Nurizzo, G. J. Davies

Date :   21 May 03 (Deposition) - 16 Mar 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.35

Chains :   Asym./Biol. Unit : A

Keywords :   Hydrolase, Carbohydrate Binding Module, Mannan, Lectin, Glycoside Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. B. Boraston, T. J. Revett, C. M. Boraston, D. Nurizzo, G. J. Davies
Structural And Thermodynamic Dissection Of Specific Mannan Recognition By A Carbohydrate Binding Module, Tmcbm27
Structure V. 11 665 2003
PubMed-ID: 12791255 | Reference-DOI: 10.1016/S0969-2126(03)00100-X

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 11)

Sites (11, 11)

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PRO A:55 , ARG A:95 , ASP A:110 , BMA A:1178	BINDING SITE FOR RESIDUE BMA A1177
02	AC2	SOFTWARE	ASP A:59 , ARG A:95 , ASP A:110 , BMA A:1177 , BMA A:1179 , HOH A:2168	BINDING SITE FOR RESIDUE BMA A1178
03	AC3	SOFTWARE	TRP A:60 , GLU A:62 , LYS A:106 , BMA A:1178 , BMA A:1180 , GLA A:1182 , HOH A:2091 , HOH A:2169	BINDING SITE FOR RESIDUE BMA A1179
04	AC4	SOFTWARE	GLU A:62 , ARG A:64 , TYR A:97 , TRP A:104 , LYS A:106 , BMA A:1179 , BMA A:1181 , GLA A:1182 , GLA A:1183 , HOH A:2091 , HOH A:2170	BINDING SITE FOR RESIDUE BMA A1180
05	AC5	SOFTWARE	LYS A:57 , ARG A:64 , BMA A:1180 , HOH A:2063 , HOH A:2171	BINDING SITE FOR RESIDUE BMA A1181
06	AC6	SOFTWARE	LYS A:106 , BMA A:1180 , GLA A:1182 , HOH A:2174	BINDING SITE FOR RESIDUE GLA A1183
07	AC7	SOFTWARE	TRP A:28 , SER A:34 , BMA A:1179 , BMA A:1180 , GLA A:1183 , HOH A:2172 , HOH A:2173	BINDING SITE FOR RESIDUE GLA A1182
08	AC8	SOFTWARE	ASP A:12 , GLY A:44 , GLY A:46 , ASP A:165 , HOH A:2054 , HOH A:2158	BINDING SITE FOR RESIDUE CA A1186
09	AC9	SOFTWARE	ARG A:4 , GLU A:17 , VAL A:87 , GLU A:88 , ARG A:131 , HOH A:2082 , HOH A:2115 , HOH A:2179 , HOH A:2180 , HOH A:2181 , HOH A:2182	BINDING SITE FOR RESIDUE SO4 A1187
10	BC1	SOFTWARE	VAL A:19 , TRP A:22 , ASP A:36 , ILE A:37 , ARG A:93 , ASN A:113 , ALA A:114 , HOH A:2024 , HOH A:2089 , HOH A:2106 , HOH A:2175 , HOH A:2176 , HOH A:2177 , HOH A:2178	BINDING SITE FOR RESIDUE GOL A1184
11	BC2	SOFTWARE	VAL A:11 , ASP A:12 , PHE A:13 , SER A:14 , GLU A:18 , LYS A:127	BINDING SITE FOR RESIDUE GOL A1185

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:174
 aligned with Q9RIK9_THEMT | Q9RIK9 from UniProtKB/TrEMBL  Length:680

    Alignment length:174
                                   516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676    
         Q9RIK9_THEMT   507 ARYVLAEEVDFSSPEEVKNWWNSGTWQAEFGSPDIEWNGEVGNGALQLNVKLPGKSDWEEVRVARKFERLSECEILEYDIYIPNVEGLKGRLRPYAVLNPGWVKIGLDMNNANVESAEIITFGGKEYRRFHVRIEFDRTAGVKELHIGVVGDHLRYDGPIFIDNVRLYKRTGGM 680
               SCOP domains d1oh4a_ A: Beta-mannosidase, C-terminal domain                                                                                                                                 SCOP domains
               CATH domains 1oh4A00 A:3-176 Galactose-binding domain-like                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee...hhhhhh.eeeeeee..eeeeeeeeee.hhhhheeeeeeee......eeeeeeee..hhhhh.eeeeeeeee.......ee..eeeee...eee......ee....eeeee..eeeeeeeeeee........eeeeeeeee...eeeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1oh4 A   3 ARYVLAEEVDFSSPEEVKNWWNSGTWQAEFGSPDIEWNGEVGNGALQLNVKLPGKSDWEEVRVARKFERLSECEILEYDIYIPNVEGLKGRLRPYAVLNPGWVKIGLDMNNANVESAEIITFGGKEYRRFHVRIEFDRTAGVKELHIGVVGDHLRYDGPIFIDNVRLYKRTGGM 176
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (Q9RIK9_THEMT | Q9RIK9)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Catalysis of the hydrolysis of any O-glycosyl bond.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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