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(-) Description

Title :  THE CRYSTAL STRUCTURE OF PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE FROM METHANOCOCCUS JANNASHII
 
Authors :  W. D. Tolbert, D. E. Graham, R. H. White, S. E. Ealick
Date :  16 Oct 02  (Deposition) - 25 Mar 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  G,H,I,J,K,L  (1x)
Keywords :  Pyruvoyl Group, Pyruvate, Arginine Decarboxylase, Agmatine, Arginine, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. D. Tolbert, D. E. Graham, R. H. White, S. E. Ealick
Pyruvoyl-Dependent Arginine Decarboxylase From Methanococcus Jannaschii: Crystal Structures Of The Self-Cleaved And S53A Proenzyme Forms
Structure V. 11 285 2003
PubMed-ID: 12623016  |  Reference-DOI: 10.1016/S0969-2126(03)00026-1
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE BETA CHAIN
    Chains: A, C, E, G, I, K
    EC Number: 4.1.1.19
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET19B (NOVAGEN)
    Expression System Strain: BL21-CODON-PLUS(DE3)-RIL (STRATAGENE)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MJ0316
    Organism Scientific: METHANOCALDOCOCCUS JANNASCHII
    Organism Taxid: 2190
    Synonym: PVLARGDC
 
Molecule 2 - PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE ALPHA CHAIN
    Chains: B, D, F, H, J, L
    EC Number: 4.1.1.19
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET19B (NOVAGEN)
    Expression System Strain: BL21-CODON-PLUS(DE3)-RIL (STRATAGENE)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MJ0316
    Organism Scientific: METHANOCALDOCOCCUS JANNASCHII
    Organism Taxid: 2190
    Synonym: PVLARGDC

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABCDEF      
Biological Unit 2 (1x):       GHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 20)

Asymmetric Unit (3, 20)
No.NameCountTypeFull Name
1AG26Ligand/IonAGMATINE
2MRD8Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
3PYR6Mod. Amino AcidPYRUVIC ACID
Biological Unit 1 (3, 10)
No.NameCountTypeFull Name
1AG23Ligand/IonAGMATINE
2MRD4Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
3PYR3Mod. Amino AcidPYRUVIC ACID
Biological Unit 2 (3, 10)
No.NameCountTypeFull Name
1AG23Ligand/IonAGMATINE
2MRD4Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
3PYR3Mod. Amino AcidPYRUVIC ACID

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:52 , HOH A:6663 , PYR B:53 , ILE B:107 , GLU B:109 , LEU C:31 , ASP C:35 , LEU C:38 , GLY C:44 , VAL C:46BINDING SITE FOR RESIDUE AG2 B 7011
02AC2SOFTWARESER G:52 , HOH G:6664 , PYR H:53 , ILE H:107 , GLU H:109 , LEU K:31 , ASP K:35 , LEU K:38 , GLY K:44 , VAL K:46BINDING SITE FOR RESIDUE AG2 H 7012
03AC3SOFTWARELEU G:31 , ASP G:35 , LEU G:38 , GLY G:44 , VAL G:46 , HOH H:6654 , SER I:52 , PYR J:53 , ILE J:107 , GLU J:109 , HOH J:6659BINDING SITE FOR RESIDUE AG2 J 7013
04AC4SOFTWARELEU I:31 , ASP I:35 , LEU I:38 , GLY I:44 , VAL I:46 , HOH J:6662 , SER K:52 , PYR L:53 , ILE L:107 , MET L:108 , GLU L:109 , HOH L:6658BINDING SITE FOR RESIDUE AG2 L 7014
05AC5SOFTWARESER C:52 , PYR D:53 , ILE D:107 , GLU D:109 , HOH D:6661 , LEU E:31 , ASP E:35 , LEU E:38 , GLY E:44 , VAL E:46BINDING SITE FOR RESIDUE AG2 D 7015
06AC6SOFTWAREPHE A:34 , ASP A:35 , LEU A:38 , GLY A:44 , VAL A:46 , SER E:52 , PYR F:53 , ILE F:107 , GLU F:109 , HOH F:6655BINDING SITE FOR RESIDUE AG2 F 7016
07AC7SOFTWARETYR D:77 , TYR D:79 , HOH D:6656BINDING SITE FOR RESIDUE MRD D 7001
08AC8SOFTWAREHOH G:6660 , LEU K:31 , TYR L:77 , TYR L:79 , ILE L:81BINDING SITE FOR RESIDUE MRD L 7002
09AC9SOFTWARELEU G:31 , PHE G:34 , TYR H:77 , TYR H:79 , HOH H:6654BINDING SITE FOR RESIDUE MRD H 7003
10BC1SOFTWARELEU I:31 , TYR J:77 , TYR J:79 , ILE J:81 , HOH J:6662BINDING SITE FOR RESIDUE MRD J 7004
11BC2SOFTWARELEU E:31 , PHE E:34 , TYR F:77 , TYR F:79 , ILE F:81 , HOH F:6020 , HOH F:6673BINDING SITE FOR RESIDUE MRD F 7005
12BC3SOFTWARELEU A:31 , PHE A:34 , TYR B:77 , TYR B:79 , ILE B:81 , HOH B:6653BINDING SITE FOR RESIDUE MRD B 7006
13BC4SOFTWAREGLU H:132 , GLY H:135 , TRP H:136 , GLY L:135 , TRP L:136 , GLU L:137 , HOH L:6330BINDING SITE FOR RESIDUE MRD H 7007
14BC5SOFTWAREGLU D:132 , GLY D:135 , TRP D:136 , GLY F:135 , TRP F:136 , HOH F:6290 , HOH F:6320BINDING SITE FOR RESIDUE MRD D 7008

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1N13)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1N13)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1N13)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1N13)

(-) Exons   (0, 0)

(no "Exon" information available for 1N13)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:46
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:46
                                    16        26        36        46      
           PDAD_METJA     7 PLHAYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
               SCOP domains d1n13.1 A:,B: Arginine decarboxylase           SCOP domains
               CATH domains 1n13A00 A:7-52                                 CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeeeeee..hhhhhhhhhhhhhh....eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                 1n13 A   7 PLHAYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
                                    16        26        36        46      


Chain B from PDB  Type:PROTEIN  Length:113
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:113
                                    62        72        82        92       102       112       122       132       142       152       162   
           PDAD_METJA    53 SIMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
               SCOP domains d1n13.1 A:,B: Arginine decarboxylase                                                                              SCOP domains
               CATH domains -1n13B00 B:54-165 Pyruvoyl-Dependent Histidine Decarboxylase, subunit B                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee..........eeeeeeeeeee.....eeeeeeeeeee.......eeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1n13 B  53 xIMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
                            |       62        72        82        92       102       112       122       132       142       152       162   
                           53-PYR                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:48
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:48
                                    14        24        34        44        
           PDAD_METJA     5 INPLHAYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
               SCOP domains d1n13.2 C:,D: Arginine decarboxylase             SCOP domains
               CATH domains 1n13C00 C:5-52                                   CATH domains
               Pfam domains ------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhh...eeeeeeeeee..hhhhhhhhhhhhhh....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------ Transcript
                 1n13 C   5 INPLHAYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
                                    14        24        34        44        


Chain D from PDB  Type:PROTEIN  Length:113
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:113
                                    62        72        82        92       102       112       122       132       142       152       162   
           PDAD_METJA    53 SIMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
               SCOP domains d1n13.2 C:,D: Arginine decarboxylase                                                                              SCOP domains
               CATH domains -1n13D00 D:54-165 Pyruvoyl-Dependent Histidine Decarboxylase, subunit B                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee..........eeeeeeeeeee.....eeeeeeeeeee.......eeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1n13 D  53 xIMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
                            |       62        72        82        92       102       112       122       132       142       152       162   
                           53-PYR                                                                                                            


Chain E from PDB  Type:PROTEIN  Length:50
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:50
                                    12        22        32        42        52
           PDAD_METJA     3 AEINPLHAYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
               SCOP domains d1n13.3 E:,F: Arginine decarboxylase               SCOP domains
               CATH domains 1n13E00 E:3-52  [code=3.30.60.30, no name defined] CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeeeeeee..hhhhhhhhhhhhhh....eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                 1n13 E   3 AEINPLHAYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
                                    12        22        32        42        52


Chain F from PDB  Type:PROTEIN  Length:113
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:113
                                    62        72        82        92       102       112       122       132       142       152       162   
           PDAD_METJA    53 SIMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
               SCOP domains d1n13.3 E:,F: Arginine decarboxylase                                                                              SCOP domains
               CATH domains -1n13F00 F:54-165 Pyruvoyl-Dependent Histidine Decarboxylase, subunit B                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee..........eeeeeeeeeee.....eeeeeeeeeee.......eeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1n13 F  53 xIMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
                            |       62        72        82        92       102       112       122       132       142       152       162   
                           53-PYR                                                                                                            


Chain G from PDB  Type:PROTEIN  Length:41
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:41
                                    21        31        41        51 
           PDAD_METJA    12 FKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
               SCOP domains d1n13.4 G:,H: Arginine decarboxylase      SCOP domains
               CATH domains 1n13G00 G:12-52                           CATH domains
               Pfam domains ----------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee..hhhhhhhhhhhhhh....eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------- PROSITE
                 Transcript ----------------------------------------- Transcript
                 1n13 G  12 FKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
                                    21        31        41        51 


Chain H from PDB  Type:PROTEIN  Length:113
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:113
                                    62        72        82        92       102       112       122       132       142       152       162   
           PDAD_METJA    53 SIMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
               SCOP domains d1n13.4 G:,H: Arginine decarboxylase                                                                              SCOP domains
               CATH domains -1n13H00 H:54-165 Pyruvoyl-Dependent Histidine Decarboxylase, subunit B                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee..........eeeeeeeeeee.....eeeeeeeeeee.......eeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1n13 H  53 xIMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
                            |       62        72        82        92       102       112       122       132       142       152       162   
                           53-PYR                                                                                                            


Chain I from PDB  Type:PROTEIN  Length:49
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:49
                                    13        23        33        43         
           PDAD_METJA     4 EINPLHAYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
               SCOP domains d1n13.5 I:,J: Arginine decarboxylase              SCOP domains
               CATH domains 1n13I00 I:4-52                                    CATH domains
               Pfam domains ------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeeee..hhhhhhhhhhhhhh....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------- Transcript
                 1n13 I   4 EINPLHAYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
                                    13        23        33        43         


Chain J from PDB  Type:PROTEIN  Length:113
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:113
                                    62        72        82        92       102       112       122       132       142       152       162   
           PDAD_METJA    53 SIMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
               SCOP domains d1n13.5 I:,J: Arginine decarboxylase                                                                              SCOP domains
               CATH domains -1n13J00 J:54-165 Pyruvoyl-Dependent Histidine Decarboxylase, subunit B                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee..........eeeeeeeeeee.....eeeeeeeeeee.......eeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1n13 J  53 xIMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
                            |       62        72        82        92       102       112       122       132       142       152       162   
                           53-PYR                                                                                                            


Chain K from PDB  Type:PROTEIN  Length:43
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:43
                                    19        29        39        49   
           PDAD_METJA    10 AYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
               SCOP domains d1n13.6 K:,L: Arginine decarboxylase        SCOP domains
               CATH domains 1n13K00 K:10-52                             CATH domains
               Pfam domains ------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeee..hhhhhhhhhhhhhh....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------- PROSITE
                 Transcript ------------------------------------------- Transcript
                 1n13 K  10 AYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
                                    19        29        39        49   


Chain L from PDB  Type:PROTEIN  Length:113
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:113
                                    62        72        82        92       102       112       122       132       142       152       162   
           PDAD_METJA    53 SIMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
               SCOP domains d1n13.6 K:,L: Arginine decarboxylase                                                                              SCOP domains
               CATH domains -1n13L00 L:54-165 Pyruvoyl-Dependent Histidine Decarboxylase, subunit B                                           CATH domains
           Pfam domains (1) -PvlArgDC-1n13L01 L:54-164                                                                                      - Pfam domains (1)
           Pfam domains (2) -PvlArgDC-1n13L02 L:54-164                                                                                      - Pfam domains (2)
           Pfam domains (3) -PvlArgDC-1n13L03 L:54-164                                                                                      - Pfam domains (3)
           Pfam domains (4) -PvlArgDC-1n13L04 L:54-164                                                                                      - Pfam domains (4)
           Pfam domains (5) -PvlArgDC-1n13L05 L:54-164                                                                                      - Pfam domains (5)
           Pfam domains (6) -PvlArgDC-1n13L06 L:54-164                                                                                      - Pfam domains (6)
           Pfam domains (7) -PvlArgDC-1n13L07 L:54-164                                                                                      - Pfam domains (7)
           Pfam domains (8) -PvlArgDC-1n13L08 L:54-164                                                                                      - Pfam domains (8)
           Pfam domains (9) -PvlArgDC-1n13L09 L:54-164                                                                                      - Pfam domains (9)
          Pfam domains (10) -PvlArgDC-1n13L10 L:54-164                                                                                      - Pfam domains (10)
          Pfam domains (11) -PvlArgDC-1n13L11 L:54-164                                                                                      - Pfam domains (11)
          Pfam domains (12) -PvlArgDC-1n13L12 L:54-164                                                                                      - Pfam domains (12)
         Sec.struct. author .......ee..........eeeeeeeeeee.....eeeeeeeeeee.......eeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1n13 L  53 xIMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
                            |       62        72        82        92       102       112       122       132       142       152       162   
                           53-PYR
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 12)

Asymmetric Unit
(-)
Clan: no clan defined [family: PvlArgDC] (4)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (PDAD_METJA | Q57764)
molecular function
    GO:0008792    arginine decarboxylase activity    Catalysis of the reaction: L-arginine + H(+) = agmatine + CO(2).
    GO:0016831    carboxy-lyase activity    Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
    GO:0006527    arginine catabolic process    The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
    GO:0006520    cellular amino acid metabolic process    The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.

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Asymmetric Unit
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  1n13
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  PDAD_METJA | Q57764
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PDAD_METJA | Q57764: 1mt1 1n2m 2qqc 2qqd

(-) Related Entries Specified in the PDB File

1mt1 METHANOCOCCUS JANNASCHII ARGININE DECARBOXYLASE ORIGINAL STRUCTURE WITH SELENOMETHIONINE LABELED ENZYME
1n2m S53A PROENZYME STRUCTURE