2QQC - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   E109Q MUTANT OF PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE FROM METHANOCOCCUS JANNASHII

Authors :   S. E. Ealick, E. S. Soriano

Date :   26 Jul 07 (Deposition) - 18 Mar 08 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F  (1x)
Biol. Unit 2: G,H,I,J,K,L  (1x)

Keywords :   Arginine Decarboxylase, Pyruvoyl, Decarboxylation, Autoprocessing, Serinolysis, Lyase, Pyruvate (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. V. Soriano, D. E. Mccloskey, C. Kinsland, A. E. Pegg, S. E. Ealick
Structures Of The N47A And E109Q Mutant Proteins Of Pyruvoyl-Dependent Arginine Decarboxylase From Methanococcus Jannaschii.
Acta Crystallogr. , Sect. D V. 64 377 2008
PubMed-ID: 18391404 | Reference-DOI: 10.1107/S0907444908000474
(for further references see the PDB file header)

Molecule 1 - PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE (EC 4.1.1.19) (PVLARGDC)
	Chains	:	A, C, E, G, I, K
	EC Number	:	4.1.1.19
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	BETA SUBUNIT
	Gene	:	PDAD
	Organism Scientific	:	METHANOCALDOCOCCUS JANNASCHII
	Organism Taxid	:	2190

Molecule 2 - PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE (EC 4.1.1.19) (PVLARGDC)
	Chains	:	B, D, F, H, J, L
	EC Number	:	4.1.1.19
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	ALPHA SUBUNIT
	Gene	:	PDAD
	Mutation	:	YES
	Organism Scientific	:	METHANOCALDOCOCCUS JANNASCHII
	Organism Taxid	:	2190

		1	2	3	4	5	6	7	8	9	10	11	12
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J	K	L
Biological Unit 1 (1x)	:	A	B	C	D	E	F
Biological Unit 2 (1x)	:							G	H	I	J	K	L

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 16)

No.	Name	Count	Type	Full Name
1	AG2	6	Ligand/Ion	AGMATINE
2	MPD	4	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
3	PYR	6	Ligand/Ion	PYRUVIC ACID

Biological Unit 1 (3, 9)

No.	Name	Count	Type	Full Name
1	AG2	3	Ligand/Ion	AGMATINE
2	MPD	3	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
3	PYR	3	Ligand/Ion	PYRUVIC ACID

Biological Unit 2 (3, 7)

No.	Name	Count	Type	Full Name
1	AG2	3	Ligand/Ion	AGMATINE
2	MPD	1	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
3	PYR	3	Ligand/Ion	PYRUVIC ACID

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:52 , ILE B:107 , GLN B:109 , LEU C:31 , ASP C:35 , LEU C:38 , GLY C:44	BINDING SITE FOR RESIDUE AG2 A 671
02	AC2	SOFTWARE	SER C:52 , ILE D:107 , GLN D:109 , ARG D:134 , LEU E:31 , ASP E:35 , LEU E:38 , GLY E:44	BINDING SITE FOR RESIDUE AG2 E 671
03	AC3	SOFTWARE	LEU A:31 , ASP A:35 , LEU A:38 , GLY A:44 , SER E:52 , ILE F:107 , MET F:108 , GLN F:109 , ARG F:134	BINDING SITE FOR RESIDUE AG2 A 672
04	AC4	SOFTWARE	SER G:52 , ILE H:107 , MET H:108 , GLN H:109 , ARG H:134 , LEU K:31 , ASP K:35 , LEU K:38 , GLY K:44	BINDING SITE FOR RESIDUE AG2 K 671
05	AC5	SOFTWARE	LEU G:31 , ASP G:35 , LEU G:38 , GLY G:44 , SER I:52 , ILE J:107 , GLN J:109	BINDING SITE FOR RESIDUE AG2 I 671
06	AC6	SOFTWARE	LEU I:31 , ASP I:35 , LEU I:38 , GLY I:44 , SER K:52 , ILE L:107 , MET L:108 , GLN L:109	BINDING SITE FOR RESIDUE AG2 I 672
07	AC7	SOFTWARE	ILE A:51 , ILE B:54 , ALA B:76 , LEU B:106 , ILE B:107 , ASN C:47	BINDING SITE FOR RESIDUE PYR B 53
08	AC8	SOFTWARE	ILE C:51 , ILE D:54 , ALA D:76 , LEU D:106 , ILE D:107 , ASN E:47	BINDING SITE FOR RESIDUE PYR D 53
09	AC9	SOFTWARE	ASN A:47 , ILE E:51 , ILE F:54 , ALA F:76 , LEU F:106 , ILE F:107	BINDING SITE FOR RESIDUE PYR F 53
10	BC1	SOFTWARE	ILE G:51 , ILE H:54 , LEU H:106 , ILE H:107 , ASN K:47	BINDING SITE FOR RESIDUE PYR H 53
11	BC2	SOFTWARE	ASN G:47 , ILE I:51 , ILE J:54 , ILE J:107	BINDING SITE FOR RESIDUE PYR J 53
12	BC3	SOFTWARE	ASN I:47 , ILE K:51 , ILE L:54 , ALA L:76 , LEU L:106 , ILE L:107	BINDING SITE FOR RESIDUE PYR L 53
13	BC4	SOFTWARE	LEU C:31 , PHE C:34 , TYR D:77 , TYR D:79	BINDING SITE FOR RESIDUE MPD C 700
14	BC5	SOFTWARE	HOH C:716 , LEU E:31 , PHE E:34 , TYR F:79	BINDING SITE FOR RESIDUE MPD E 700
15	BC6	SOFTWARE	LEU A:31 , TYR B:77 , TYR B:79 , HOH E:750	BINDING SITE FOR RESIDUE MPD B 700
16	BC7	SOFTWARE	PHE I:34 , HOH K:697	BINDING SITE FOR RESIDUE MPD I 700

(no "SS Bond" information available for 2QQC)

(no "Cis Peptide Bond" information available for 2QQC)

(no "SAP(SNP)/Variant" information available for 2QQC)

(no "PROSITE Motif" information available for 2QQC)

(no "Exon" information available for 2QQC)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:46
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:46
                                    16        26        36        46      
           PDAD_METJA     7 PLHAYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
               SCOP domains ---------------------------------------------- SCOP domains
               CATH domains 2qqcA00 A:7-52                                 CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeeeeee..hhhhhhhhhhhhhh....eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                 2qqc A   7 PLHAYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
                                    16        26        36        46

Chain B from PDB  Type:PROTEIN  Length:112
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:112
                                    63        73        83        93       103       113       123       133       143       153       163  
           PDAD_METJA    54 IMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qqcB00 B:54-165 Pyruvoyl-Dependent Histidine Decarboxylase, subunit B                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee..........eeeeeeeeeee.....eeeeeeeeeee.......eeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 2qqc B  54 IMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMQYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
                                    63        73        83        93       103       113       123       133       143       153       163

Chain C from PDB  Type:PROTEIN  Length:47
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:47
                                    15        25        35        45       
           PDAD_METJA     6 NPLHAYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
               SCOP domains ----------------------------------------------- SCOP domains
               CATH domains 2qqcC00 C:6-52                                  CATH domains
               Pfam domains ----------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh...eeeeeeeeee..hhhhhhhhhhhhhh....eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------- PROSITE
                 Transcript ----------------------------------------------- Transcript
                 2qqc C   6 NPLHAYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
                                    15        25        35        45

Chain D from PDB  Type:PROTEIN  Length:112
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:112
                                    63        73        83        93       103       113       123       133       143       153       163  
           PDAD_METJA    54 IMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qqcD00 D:54-165 Pyruvoyl-Dependent Histidine Decarboxylase, subunit B                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee..........eeeeeeeeeee.....eeeeeeeeeee.......eeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 2qqc D  54 IMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMQYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
                                    63        73        83        93       103       113       123       133       143       153       163

Chain E from PDB  Type:PROTEIN  Length:50
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:50
                                    12        22        32        42        52
           PDAD_METJA     3 AEINPLHAYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains 2qqcE00 E:3-52  [code=3.30.60.30, no name defined] CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeeeeeee..hhhhhhhhhhhhhh....eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                 2qqc E   3 AEINPLHAYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
                                    12        22        32        42        52

Chain F from PDB  Type:PROTEIN  Length:112
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:112
                                    63        73        83        93       103       113       123       133       143       153       163  
           PDAD_METJA    54 IMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qqcF00 F:54-165 Pyruvoyl-Dependent Histidine Decarboxylase, subunit B                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee..........eeeeeeeeeee.....eeeeeeeeeee.......eeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 2qqc F  54 IMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMQYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
                                    63        73        83        93       103       113       123       133       143       153       163

Chain G from PDB  Type:PROTEIN  Length:40
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:40
                                    22        32        42        52
           PDAD_METJA    13 KLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
               SCOP domains ---------------------------------------- SCOP domains
               CATH domains 2qqcG00 G:13-52                          CATH domains
               Pfam domains ---------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee..hhhhhhhhhhhhhh....eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------- PROSITE
                 Transcript ---------------------------------------- Transcript
                 2qqc G  13 KLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
                                    22        32        42        52

Chain H from PDB  Type:PROTEIN  Length:112
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:112
                                    63        73        83        93       103       113       123       133       143       153       163  
           PDAD_METJA    54 IMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qqcH00 H:54-165 Pyruvoyl-Dependent Histidine Decarboxylase, subunit B                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee..........eeeeeeeeeee.....eeeeeeeeeee.......eeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 2qqc H  54 IMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMQYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
                                    63        73        83        93       103       113       123       133       143       153       163

Chain I from PDB  Type:PROTEIN  Length:40
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:40
                                    22        32        42        52
           PDAD_METJA    13 KLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
               SCOP domains ---------------------------------------- SCOP domains
               CATH domains 2qqcI00 I:13-52                          CATH domains
               Pfam domains ---------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee..hhhhhhhhhhhhhh....eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------- PROSITE
                 Transcript ---------------------------------------- Transcript
                 2qqc I  13 KLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
                                    22        32        42        52

Chain J from PDB  Type:PROTEIN  Length:112
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:112
                                    63        73        83        93       103       113       123       133       143       153       163  
           PDAD_METJA    54 IMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qqcJ00 J:54-165 Pyruvoyl-Dependent Histidine Decarboxylase, subunit B                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee..........eeeeeeeeeee.....eeeeeeeeeee.......eeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 2qqc J  54 IMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMQYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
                                    63        73        83        93       103       113       123       133       143       153       163

Chain K from PDB  Type:PROTEIN  Length:40
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:40
                                    22        32        42        52
           PDAD_METJA    13 KLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
               SCOP domains ---------------------------------------- SCOP domains
               CATH domains 2qqcK00 K:13-52                          CATH domains
               Pfam domains ---------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee..hhhhhhhhhhhhhh....eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------- PROSITE
                 Transcript ---------------------------------------- Transcript
                 2qqc K  13 KLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS  52
                                    22        32        42        52

Chain L from PDB  Type:PROTEIN  Length:112
 aligned with PDAD_METJA | Q57764 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:112
                                    63        73        83        93       103       113       123       133       143       153       163  
           PDAD_METJA    54 IMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qqcL00 L:54-165 Pyruvoyl-Dependent Histidine Decarboxylase, subunit B                                           CATH domains
           Pfam domains (1) PvlArgDC-2qqcL01 L:54-164                                                                                      - Pfam domains (1)
           Pfam domains (2) PvlArgDC-2qqcL02 L:54-164                                                                                      - Pfam domains (2)
           Pfam domains (3) PvlArgDC-2qqcL03 L:54-164                                                                                      - Pfam domains (3)
           Pfam domains (4) PvlArgDC-2qqcL04 L:54-164                                                                                      - Pfam domains (4)
           Pfam domains (5) PvlArgDC-2qqcL05 L:54-164                                                                                      - Pfam domains (5)
           Pfam domains (6) PvlArgDC-2qqcL06 L:54-164                                                                                      - Pfam domains (6)
           Pfam domains (7) PvlArgDC-2qqcL07 L:54-164                                                                                      - Pfam domains (7)
           Pfam domains (8) PvlArgDC-2qqcL08 L:54-164                                                                                      - Pfam domains (8)
           Pfam domains (9) PvlArgDC-2qqcL09 L:54-164                                                                                      - Pfam domains (9)
          Pfam domains (10) PvlArgDC-2qqcL10 L:54-164                                                                                      - Pfam domains (10)
          Pfam domains (11) PvlArgDC-2qqcL11 L:54-164                                                                                      - Pfam domains (11)
          Pfam domains (12) PvlArgDC-2qqcL12 L:54-164                                                                                      - Pfam domains (12)
         Sec.struct. author ......ee..........eeeeeeeeeee.....eeeeeeeeeee.......eeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 2qqc L  54 IMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMQYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK 165
                                    63        73        83        93       103       113       123       133       143       153       163

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2QQC)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Wheat Germ Agglutinin (Isolectin 2); domain 1 (140)

Homologous Superfamily: [code=3.30.60.30, no name defined] (93)

Methanocaldococcus jannaschii. Organism_taxid: 2190. (4)

1a	2qqcE00	E:3-52
1b	2qqcI00	I:13-52
1c	2qqcK00	K:13-52
1d	2qqcC00	C:6-52
1e	2qqcA00	A:7-52
1f	2qqcG00	G:13-52

Architecture: 3-Layer(bba) Sandwich (528)

Topology: Pyruvoyl-Dependent Histidine Decarboxylase; Chain B (11)

Homologous Superfamily: Pyruvoyl-Dependent Histidine Decarboxylase, subunit B (11)

Methanocaldococcus jannaschii. Organism_taxid: 2190. (5)

2a	2qqcB00	B:54-165
2b	2qqcD00	D:54-165
2c	2qqcF00	F:54-165
2d	2qqcH00	H:54-165
2e	2qqcJ00	J:54-165
2f	2qqcL00	L:54-165

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: PvlArgDC] (4)

Family: PvlArgDC (4)

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Meth (4)

1a	PvlArgDC-2qqcL01	L:54-164
1b	PvlArgDC-2qqcL02	L:54-164
1c	PvlArgDC-2qqcL03	L:54-164
1d	PvlArgDC-2qqcL04	L:54-164
1e	PvlArgDC-2qqcL05	L:54-164
1f	PvlArgDC-2qqcL06	L:54-164
1g	PvlArgDC-2qqcL07	L:54-164
1h	PvlArgDC-2qqcL08	L:54-164
1i	PvlArgDC-2qqcL09	L:54-164
1j	PvlArgDC-2qqcL10	L:54-164
1k	PvlArgDC-2qqcL11	L:54-164
1l	PvlArgDC-2qqcL12	L:54-164

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H,I,J,K,L (PDAD_METJA | Q57764)

molecular function
	GO:0008792	arginine decarboxylase activity	Catalysis of the reaction: L-arginine + H(+) = agmatine + CO(2).
	GO:0016831	carboxy-lyase activity	Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
	GO:0006527	arginine catabolic process	The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
	GO:0006520	cellular amino acid metabolic process	The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.

Asymmetric Unit
	Complete Structure
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2qqc)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2qqc
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	PDAD_METJA \| Q57764
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	4.1.1.19
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

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	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
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Access by UniProt ID/Accession number
	PDAD_METJA \| Q57764
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	PDAD_METJA \| Q57764	:	1mt1 1n13 1n2m 2qqd

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 16)

Sites (16, 16)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (2, 12)

Pfam Domains (1, 12)

Gene Ontology (5, 5)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File