1N13 - Sequence, Chains, Asymmetric and Biological Units

• Title: THE CRYSTAL STRUCTURE OF PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE FROM METHANOCOCCUS JANNASHII
• Keywords: PYRUVOYL GROUP, PYRUVATE, ARGININE DECARBOXYLASE, AGMATINE, ARGININE, LYASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1N13	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE BETA CHAIN	A	46	336	0
2	Protein	PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE ALPHA CHAIN	B	113	854	5
3	Protein	PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE BETA CHAIN	C	48	352	0
4	Protein	PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE ALPHA CHAIN	D	113	854	5
5	Protein	PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE BETA CHAIN	E	50	366	0
6	Protein	PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE ALPHA CHAIN	F	113	854	5
7	Protein	PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE BETA CHAIN	G	41	294	0
8	Protein	PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE ALPHA CHAIN	H	113	854	5
9	Protein	PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE BETA CHAIN	I	49	361	0
10	Protein	PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE ALPHA CHAIN	J	113	854	5
11	Protein	PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE BETA CHAIN	K	43	311	0
12	Protein	PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE ALPHA CHAIN	L	113	854	5
13	Ligand	PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE ALPHA CHAIN	B	2	0	17
14	Ligand	PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE ALPHA CHAIN	D	3	0	25
15	Ligand	PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE ALPHA CHAIN	F	2	0	17
16	Ligand	PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE ALPHA CHAIN	H	3	0	25
17	Ligand	PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE ALPHA CHAIN	J	2	0	17
18	Ligand	PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE ALPHA CHAIN	L	2	0	17
19	Water			736	0	736
total				1705	7144	884

Proteins

Unit 1	PRO 7 LEU 8 HIS 9 ALA 10 TYR 11 PHE 12 LYS 13 LEU 14 PRO 15 ASN 16 THR 17 VAL 18 SER 19 LEU 20 VAL 21 ALA 22 GLY 23 SER 24 SER 25 GLU 26 GLY 27 GLU 28 THR 29 PRO 30 LEU 31 ASN 32 ALA 33 PHE 34 ASP 35 GLY 36 ALA 37 LEU 38 LEU 39 ASN 40 ALA 41 GLY 42 ILE 43 GLY 44 ASN 45 VAL 46 ASN 47 LEU 48 ILE 49 ARG 50 ILE 51 SER 52
Unit 2	PYR 53 ILE 54 MET 55 PRO 56 PRO 57 GLU 58 ALA 59 GLU 60 ILE 61 VAL 62 PRO 63 LEU 64 PRO 65 LYS 66 LEU 67 PRO 68 MET 69 GLY 70 ALA 71 LEU 72 VAL 73 PRO 74 THR 75 ALA 76 TYR 77 GLY 78 TYR 79 ILE 80 ILE 81 SER 82 ASP 83 VAL 84 PRO 85 GLY 86 GLU 87 THR 88 ILE 89 SER 90 ALA 91 ALA 92 ILE 93 SER 94 VAL 95 ALA 96 ILE 97 PRO 98 LYS 99 ASP 100 LYS 101 SER 102 LEU 103 CYS 104 GLY 105 LEU 106 ILE 107 MET 108 GLU 109 TYR 110 GLU 111 GLY 112 LYS 113 CYS 114 SER 115 LYS 116 LYS 117 GLU 118 ALA 119 GLU 120 LYS 121 THR 122 VAL 123 ARG 124 GLU 125 MET 126 ALA 127 LYS 128 ILE 129 GLY 130 PHE 131 GLU 132 MET 133 ARG 134 GLY 135 TRP 136 GLU 137 LEU 138 ASP 139 ARG 140 ILE 141 GLU 142 SER 143 ILE 144 ALA 145 VAL 146 GLU 147 HIS 148 THR 149 VAL 150 GLU 151 LYS 152 LEU 153 GLY 154 CYS 155 ALA 156 PHE 157 ALA 158 ALA 159 ALA 160 ALA 161 LEU 162 TRP 163 TYR 164 LYS 165
Unit 3	ILE 5 ASN 6 PRO 7 LEU 8 HIS 9 ALA 10 TYR 11 PHE 12 LYS 13 LEU 14 PRO 15 ASN 16 THR 17 VAL 18 SER 19 LEU 20 VAL 21 ALA 22 GLY 23 SER 24 SER 25 GLU 26 GLY 27 GLU 28 THR 29 PRO 30 LEU 31 ASN 32 ALA 33 PHE 34 ASP 35 GLY 36 ALA 37 LEU 38 LEU 39 ASN 40 ALA 41 GLY 42 ILE 43 GLY 44 ASN 45 VAL 46 ASN 47 LEU 48 ILE 49 ARG 50 ILE 51 SER 52
Unit 4	PYR 53 ILE 54 MET 55 PRO 56 PRO 57 GLU 58 ALA 59 GLU 60 ILE 61 VAL 62 PRO 63 LEU 64 PRO 65 LYS 66 LEU 67 PRO 68 MET 69 GLY 70 ALA 71 LEU 72 VAL 73 PRO 74 THR 75 ALA 76 TYR 77 GLY 78 TYR 79 ILE 80 ILE 81 SER 82 ASP 83 VAL 84 PRO 85 GLY 86 GLU 87 THR 88 ILE 89 SER 90 ALA 91 ALA 92 ILE 93 SER 94 VAL 95 ALA 96 ILE 97 PRO 98 LYS 99 ASP 100 LYS 101 SER 102 LEU 103 CYS 104 GLY 105 LEU 106 ILE 107 MET 108 GLU 109 TYR 110 GLU 111 GLY 112 LYS 113 CYS 114 SER 115 LYS 116 LYS 117 GLU 118 ALA 119 GLU 120 LYS 121 THR 122 VAL 123 ARG 124 GLU 125 MET 126 ALA 127 LYS 128 ILE 129 GLY 130 PHE 131 GLU 132 MET 133 ARG 134 GLY 135 TRP 136 GLU 137 LEU 138 ASP 139 ARG 140 ILE 141 GLU 142 SER 143 ILE 144 ALA 145 VAL 146 GLU 147 HIS 148 THR 149 VAL 150 GLU 151 LYS 152 LEU 153 GLY 154 CYS 155 ALA 156 PHE 157 ALA 158 ALA 159 ALA 160 ALA 161 LEU 162 TRP 163 TYR 164 LYS 165
Unit 5	ALA 3 GLU 4 ILE 5 ASN 6 PRO 7 LEU 8 HIS 9 ALA 10 TYR 11 PHE 12 LYS 13 LEU 14 PRO 15 ASN 16 THR 17 VAL 18 SER 19 LEU 20 VAL 21 ALA 22 GLY 23 SER 24 SER 25 GLU 26 GLY 27 GLU 28 THR 29 PRO 30 LEU 31 ASN 32 ALA 33 PHE 34 ASP 35 GLY 36 ALA 37 LEU 38 LEU 39 ASN 40 ALA 41 GLY 42 ILE 43 GLY 44 ASN 45 VAL 46 ASN 47 LEU 48 ILE 49 ARG 50 ILE 51 SER 52
Unit 6	PYR 53 ILE 54 MET 55 PRO 56 PRO 57 GLU 58 ALA 59 GLU 60 ILE 61 VAL 62 PRO 63 LEU 64 PRO 65 LYS 66 LEU 67 PRO 68 MET 69 GLY 70 ALA 71 LEU 72 VAL 73 PRO 74 THR 75 ALA 76 TYR 77 GLY 78 TYR 79 ILE 80 ILE 81 SER 82 ASP 83 VAL 84 PRO 85 GLY 86 GLU 87 THR 88 ILE 89 SER 90 ALA 91 ALA 92 ILE 93 SER 94 VAL 95 ALA 96 ILE 97 PRO 98 LYS 99 ASP 100 LYS 101 SER 102 LEU 103 CYS 104 GLY 105 LEU 106 ILE 107 MET 108 GLU 109 TYR 110 GLU 111 GLY 112 LYS 113 CYS 114 SER 115 LYS 116 LYS 117 GLU 118 ALA 119 GLU 120 LYS 121 THR 122 VAL 123 ARG 124 GLU 125 MET 126 ALA 127 LYS 128 ILE 129 GLY 130 PHE 131 GLU 132 MET 133 ARG 134 GLY 135 TRP 136 GLU 137 LEU 138 ASP 139 ARG 140 ILE 141 GLU 142 SER 143 ILE 144 ALA 145 VAL 146 GLU 147 HIS 148 THR 149 VAL 150 GLU 151 LYS 152 LEU 153 GLY 154 CYS 155 ALA 156 PHE 157 ALA 158 ALA 159 ALA 160 ALA 161 LEU 162 TRP 163 TYR 164 LYS 165
Unit 7	PHE 12 LYS 13 LEU 14 PRO 15 ASN 16 THR 17 VAL 18 SER 19 LEU 20 VAL 21 ALA 22 GLY 23 SER 24 SER 25 GLU 26 GLY 27 GLU 28 THR 29 PRO 30 LEU 31 ASN 32 ALA 33 PHE 34 ASP 35 GLY 36 ALA 37 LEU 38 LEU 39 ASN 40 ALA 41 GLY 42 ILE 43 GLY 44 ASN 45 VAL 46 ASN 47 LEU 48 ILE 49 ARG 50 ILE 51 SER 52
Unit 8	PYR 53 ILE 54 MET 55 PRO 56 PRO 57 GLU 58 ALA 59 GLU 60 ILE 61 VAL 62 PRO 63 LEU 64 PRO 65 LYS 66 LEU 67 PRO 68 MET 69 GLY 70 ALA 71 LEU 72 VAL 73 PRO 74 THR 75 ALA 76 TYR 77 GLY 78 TYR 79 ILE 80 ILE 81 SER 82 ASP 83 VAL 84 PRO 85 GLY 86 GLU 87 THR 88 ILE 89 SER 90 ALA 91 ALA 92 ILE 93 SER 94 VAL 95 ALA 96 ILE 97 PRO 98 LYS 99 ASP 100 LYS 101 SER 102 LEU 103 CYS 104 GLY 105 LEU 106 ILE 107 MET 108 GLU 109 TYR 110 GLU 111 GLY 112 LYS 113 CYS 114 SER 115 LYS 116 LYS 117 GLU 118 ALA 119 GLU 120 LYS 121 THR 122 VAL 123 ARG 124 GLU 125 MET 126 ALA 127 LYS 128 ILE 129 GLY 130 PHE 131 GLU 132 MET 133 ARG 134 GLY 135 TRP 136 GLU 137 LEU 138 ASP 139 ARG 140 ILE 141 GLU 142 SER 143 ILE 144 ALA 145 VAL 146 GLU 147 HIS 148 THR 149 VAL 150 GLU 151 LYS 152 LEU 153 GLY 154 CYS 155 ALA 156 PHE 157 ALA 158 ALA 159 ALA 160 ALA 161 LEU 162 TRP 163 TYR 164 LYS 165
Unit 9	GLU 4 ILE 5 ASN 6 PRO 7 LEU 8 HIS 9 ALA 10 TYR 11 PHE 12 LYS 13 LEU 14 PRO 15 ASN 16 THR 17 VAL 18 SER 19 LEU 20 VAL 21 ALA 22 GLY 23 SER 24 SER 25 GLU 26 GLY 27 GLU 28 THR 29 PRO 30 LEU 31 ASN 32 ALA 33 PHE 34 ASP 35 GLY 36 ALA 37 LEU 38 LEU 39 ASN 40 ALA 41 GLY 42 ILE 43 GLY 44 ASN 45 VAL 46 ASN 47 LEU 48 ILE 49 ARG 50 ILE 51 SER 52
Unit 10	PYR 53 ILE 54 MET 55 PRO 56 PRO 57 GLU 58 ALA 59 GLU 60 ILE 61 VAL 62 PRO 63 LEU 64 PRO 65 LYS 66 LEU 67 PRO 68 MET 69 GLY 70 ALA 71 LEU 72 VAL 73 PRO 74 THR 75 ALA 76 TYR 77 GLY 78 TYR 79 ILE 80 ILE 81 SER 82 ASP 83 VAL 84 PRO 85 GLY 86 GLU 87 THR 88 ILE 89 SER 90 ALA 91 ALA 92 ILE 93 SER 94 VAL 95 ALA 96 ILE 97 PRO 98 LYS 99 ASP 100 LYS 101 SER 102 LEU 103 CYS 104 GLY 105 LEU 106 ILE 107 MET 108 GLU 109 TYR 110 GLU 111 GLY 112 LYS 113 CYS 114 SER 115 LYS 116 LYS 117 GLU 118 ALA 119 GLU 120 LYS 121 THR 122 VAL 123 ARG 124 GLU 125 MET 126 ALA 127 LYS 128 ILE 129 GLY 130 PHE 131 GLU 132 MET 133 ARG 134 GLY 135 TRP 136 GLU 137 LEU 138 ASP 139 ARG 140 ILE 141 GLU 142 SER 143 ILE 144 ALA 145 VAL 146 GLU 147 HIS 148 THR 149 VAL 150 GLU 151 LYS 152 LEU 153 GLY 154 CYS 155 ALA 156 PHE 157 ALA 158 ALA 159 ALA 160 ALA 161 LEU 162 TRP 163 TYR 164 LYS 165
Unit 11	ALA 10 TYR 11 PHE 12 LYS 13 LEU 14 PRO 15 ASN 16 THR 17 VAL 18 SER 19 LEU 20 VAL 21 ALA 22 GLY 23 SER 24 SER 25 GLU 26 GLY 27 GLU 28 THR 29 PRO 30 LEU 31 ASN 32 ALA 33 PHE 34 ASP 35 GLY 36 ALA 37 LEU 38 LEU 39 ASN 40 ALA 41 GLY 42 ILE 43 GLY 44 ASN 45 VAL 46 ASN 47 LEU 48 ILE 49 ARG 50 ILE 51 SER 52
Unit 12	PYR 53 ILE 54 MET 55 PRO 56 PRO 57 GLU 58 ALA 59 GLU 60 ILE 61 VAL 62 PRO 63 LEU 64 PRO 65 LYS 66 LEU 67 PRO 68 MET 69 GLY 70 ALA 71 LEU 72 VAL 73 PRO 74 THR 75 ALA 76 TYR 77 GLY 78 TYR 79 ILE 80 ILE 81 SER 82 ASP 83 VAL 84 PRO 85 GLY 86 GLU 87 THR 88 ILE 89 SER 90 ALA 91 ALA 92 ILE 93 SER 94 VAL 95 ALA 96 ILE 97 PRO 98 LYS 99 ASP 100 LYS 101 SER 102 LEU 103 CYS 104 GLY 105 LEU 106 ILE 107 MET 108 GLU 109 TYR 110 GLU 111 GLY 112 LYS 113 CYS 114 SER 115 LYS 116 LYS 117 GLU 118 ALA 119 GLU 120 LYS 121 THR 122 VAL 123 ARG 124 GLU 125 MET 126 ALA 127 LYS 128 ILE 129 GLY 130 PHE 131 GLU 132 MET 133 ARG 134 GLY 135 TRP 136 GLU 137 LEU 138 ASP 139 ARG 140 ILE 141 GLU 142 SER 143 ILE 144 ALA 145 VAL 146 GLU 147 HIS 148 THR 149 VAL 150 GLU 151 LYS 152 LEU 153 GLY 154 CYS 155 ALA 156 PHE 157 ALA 158 ALA 159 ALA 160 ALA 161 LEU 162 TRP 163 TYR 164 LYS 165

Ligands

Unit 13	MRD 7006 AG2 7011
Unit 14	MRD 7001 MRD 7008 AG2 7015
Unit 15	MRD 7005 AG2 7016
Unit 16	MRD 7003 MRD 7007 AG2 7012
Unit 17	MRD 7004 AG2 7013
Unit 18	MRD 7002 AG2 7014