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(-) Description

Title :  CRYSTAL STRUCTURE OF RABBIT MUSCLE GLYCOGENIN
 
Authors :  B. J. Gibbons, P. J. Roach, T. D. Hurley
Date :  26 Apr 02  (Deposition) - 15 May 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.43
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  I,J  (1x)
Keywords :  Beta-Alpha-Beta Rossman-Like Nucleotide Binding Fold, Dxd Motif, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. J. Gibbons, P. J. Roach, T. D. Hurley
Crystal Structure Of The Autocatalytic Initiator Of Glycogen Biosynthesis, Glycogenin.
J. Mol. Biol. V. 319 463 2002
PubMed-ID: 12051921  |  Reference-DOI: 10.1016/S0022-2836(02)00305-4
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLYCOGENIN-1
    Chains: A, B, C, D, E, F, G, H, I, J
    EC Number: 2.4.1.186
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B
    Expression System Strain: BL21/DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Common: RABBIT
    Organism Scientific: ORYCTOLAGUS CUNICULUS
    Organism Taxid: 9986
    Tissue: SKELETAL MUSCLE

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): AB        
Biological Unit 2 (1x):   CD      
Biological Unit 3 (1x):     EF    
Biological Unit 4 (1x):       GH  
Biological Unit 5 (1x):         IJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1LL0)

(-) Sites  (0, 0)

(no "Site" information available for 1LL0)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1LL0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1LL0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1LL0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1LL0)

(-) Exons   (0, 0)

(no "Exon" information available for 1LL0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:264
 aligned with GLYG_RABIT | P13280 from UniProtKB/Swiss-Prot  Length:333

    Alignment length:267
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       
           GLYG_RABIT     1 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLLQQFGLV 267
               SCOP domains d1ll0a_ A: Glycogenin                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1ll0A00 A:-1-266 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.hhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhh.eeee.........hhhhhhhh..hhhhhhhhhhhhh....eeeee...eee...hhhhhhh...eeee.......eeeeeeee..hhhhhhhhhhhhhhhh....hhhhhhhhhh......hhhhh.hhhhhee.hhhhhhhhhhhhhhhhh.eee.....hhhhh.ee....ee..---...hhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ll0 A  -1 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRS---DPTMTHPQFLNVWWDIFTTSVVPLLQQFGLV 266
                            ||       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229  |   |239       249       259       
                            ||                                                                                                                                                                                                                                    232 236                              
                           -1|                                                                                                                                                                                                                                                                         
                             1                                                                                                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:267
 aligned with GLYG_RABIT | P13280 from UniProtKB/Swiss-Prot  Length:333

    Alignment length:273
                                  1                                                                                                                                                                                                                                                                          
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264   
           GLYG_RABIT     - ------MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLLQQFGLV 267
               SCOP domains d1ll0b_ B: Glycogenin                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 1ll0B00 B:-7-266 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeee.hhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhh..............hhhhhhhh..hhhhhhhhhhhhh....eeeee...eee...hhhhhhh...eeee.......eeeeeeee..hhhhhhhhhhhhhhhh....hhhhhhhhhh......hhhhh.hhhhhh..hhhhhhhhhhhhhhhhh.eee.....hhhhh.ee....ee..------hhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ll0 B  -7 VPRGSHMTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRS------MTHPQFLNVWWDIFTTSVVPLLQQFGLV 266
                                  || 3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223        |-     | 243       253       263   
                                 -1|                                                                                                                                                                                                                                    232    239                           
                                   1                                                                                                                                                                                                                                                                         


Chain C from PDB  Type:PROTEIN  Length:262
 aligned with GLYG_RABIT | P13280 from UniProtKB/Swiss-Prot  Length:333

    Alignment length:267
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       
           GLYG_RABIT     1 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLLQQFGLV 267
               SCOP domains d1ll0c_ C: Glycogenin                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1ll0C00 C:-1-266 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.hhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhh..............hhhhhhhh..hhhhhhhhhhhhh....eeeee...eee...hhhhhhh...eeee.......eeeeeeee..hhhhhhhhhhhhhhhh....hhhhhhhhhh......hhhhh.hhhhhee.hhhhhhhhhhhhhhhhh.eee.....hhhhh.ee....ee..-----.hhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ll0 C  -1 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRS-----TMTHPQFLNVWWDIFTTSVVPLLQQFGLV 266
                            ||       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229  |    239       249       259       
                           -1|                                                                                                                                                                                                                                    232   238                            
                             1                                                                                                                                                                                                                                                                         


Chain D from PDB  Type:PROTEIN  Length:261
 aligned with GLYG_RABIT | P13280 from UniProtKB/Swiss-Prot  Length:333

    Alignment length:267
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       
           GLYG_RABIT     1 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLLQQFGLV 267
               SCOP domains d1ll0d_ D: Glycogenin                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1ll0D00 D:-1-266 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.hhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhh.eeee.........hhhhhhhh..hhhhhhhhhhhhh....eeeee...eee...hhhhhhh...eeee.......eeeeeeee..hhhhhhhhhhhhhhhh....hhhhhhhhhh......hhhhh.hhhhhee.hhhhhhhhhhhhhhhhh.eee.....hhhhh.ee....ee...----.--hhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ll0 D  -1 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSE----T--HPQFLNVWWDIFTTSVVPLLQQFGLV 266
                            ||       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229   |    |- |     249       259       
                           -1|                                                                                                                                                                                                                                     233  238  |                         
                             1                                                                                                                                                                                                                                             241                         


Chain E from PDB  Type:PROTEIN  Length:262
 aligned with GLYG_RABIT | P13280 from UniProtKB/Swiss-Prot  Length:333

    Alignment length:268
                             1                                                                                                                                                                                                                                                                          
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259        
           GLYG_RABIT     - -MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLLQQFGLV 267
               SCOP domains d1ll0e_ E: Glycogenin                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 1ll0E00 E:-2-266 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.hhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhh..............hhhhhhhh..hhhhhhhhhhhhh....eeeee...eee...hhhhhhh...eeee.......eeeeeeee..hhhhhhhhhhhhhhhh....hhhhhhhhhh......hhhhh.hhhhhee.hhhhhhhhhhhhhhhhh.eee.....hhhhh............------hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ll0 E  -2 HMTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSE------THPQFLNVWWDIFTTSVVPLLQQFGLV 266
                             ||      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228    |    - |     248       258        
                            -1|                                                                                                                                                                                                                                     233    240                          
                              1                                                                                                                                                                                                                                                                         


Chain F from PDB  Type:PROTEIN  Length:261
 aligned with GLYG_RABIT | P13280 from UniProtKB/Swiss-Prot  Length:333

    Alignment length:267
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       
           GLYG_RABIT     1 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLLQQFGLV 267
               SCOP domains d1ll0f_ F: Glycogenin                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1ll0F00 F:-1-266 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.hhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhh..............hhhhhhhh..hhhhhhhhhhhhh....eeeee...eee...hhhhhhh...eeee.......eeeeeeee..hhhhhhhhhhhhhhhh....hhhhhhhhhh......hhhhh.hhhhhee.hhhhhhhhhhhhhhhhh.eee.....hhhhh.ee....ee...------.hhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ll0 F  -1 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSE------THPQFLNVWWDIFTTSVVPLLQQFGLV 266
                            ||       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229   |     -|      249       259       
                           -1|                                                                                                                                                                                                                                     233    240                          
                             1                                                                                                                                                                                                                                                                         


Chain G from PDB  Type:PROTEIN  Length:262
 aligned with GLYG_RABIT | P13280 from UniProtKB/Swiss-Prot  Length:333

    Alignment length:267
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       
           GLYG_RABIT     1 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLLQQFGLV 267
               SCOP domains d1ll0g_ G: Glycogenin                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1ll0G00 G:-1-266 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.hhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhh..............hhhhhhhh..hhhhhhhhhhhhh....eeeee...eee...hhhhhhh...eeee.......eeeeeeee..hhhhhhhhhhhhhhhh....hhhhhhhhhh......hhhhh.hhhhhee.hhhhhhhhhhhhhhhhh.eee.....hhhhh.ee....ee...-----..hhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ll0 G  -1 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSE-----MTHPQFLNVWWDIFTTSVVPLLQQFGLV 266
                            ||       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229   |   239       249       259       
                           -1|                                                                                                                                                                                                                                     233   239                           
                             1                                                                                                                                                                                                                                                                         


Chain H from PDB  Type:PROTEIN  Length:260
 aligned with GLYG_RABIT | P13280 from UniProtKB/Swiss-Prot  Length:333

    Alignment length:265
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260     
           GLYG_RABIT     1 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLLQQFG 265
               SCOP domains d1ll0h_ H: Glycogenin                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1ll0H00 H:-1-264 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.hhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhh..............hhhhhhhh..hhhhhhhhhhhhh....eeeee...eee...hhhhhhh...eeee.......eeeeeeee..hhhhhhhhhhhhhhhh....hhhhhhhhhh......hhhhh.hhhhhee.hhhhhhhhhhhhhhhhh.eee.....hhhhh............-----....hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ll0 H  -1 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSE-----MTHPQFLNVWWDIFTTSVVPLLQQFG 264
                            ||       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229   |   239       249       259     
                           -1|                                                                                                                                                                                                                                     233   239                         
                             1                                                                                                                                                                                                                                                                       


Chain I from PDB  Type:PROTEIN  Length:264
 aligned with GLYG_RABIT | P13280 from UniProtKB/Swiss-Prot  Length:333

    Alignment length:271
                                1                                                                                                                                                                                                                                                                          
                                |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266 
           GLYG_RABIT     - ----MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLLQQFGLV 267
               SCOP domains d1ll0i_ I: Glycogenin                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1ll0I00 I:-5-266 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeee.hhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhh..............hhhhhhhh..hhhhhhhhhhhhh....eeeee...eee...hhhhhhh...eeee.......eeeeeeee..hhhhhhhhhhhhhhhh....hhhhhhhhhh......hhhhh.hhhhhee.hhhhhhhhhhhhhhhhh.eee.....hhhhh.ee....ee...-------hhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ll0 I  -5 RGSHMTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSE-------HPQFLNVWWDIFTTSVVPLLQQFGLV 266
                                ||   5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       | -     | 245       255       265 
                               -1|                                                                                                                                                                                                                                     233     241                         
                                 1                                                                                                                                                                                                                                                                         


Chain J from PDB  Type:PROTEIN  Length:251
 aligned with GLYG_RABIT | P13280 from UniProtKB/Swiss-Prot  Length:333

    Alignment length:259
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251         
           GLYG_RABIT     2 TDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPL 260
               SCOP domains d1ll0j_ J: Glycogenin                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1ll0J00 J:1-259 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                        CATH domains
           Pfam domains (1) ----Glyco_transf_8-1ll0J01 J:5-223                                                                                                                                                                                             ------------------------------------ Pfam domains (1)
           Pfam domains (2) ----Glyco_transf_8-1ll0J02 J:5-223                                                                                                                                                                                             ------------------------------------ Pfam domains (2)
           Pfam domains (3) ----Glyco_transf_8-1ll0J03 J:5-223                                                                                                                                                                                             ------------------------------------ Pfam domains (3)
           Pfam domains (4) ----Glyco_transf_8-1ll0J04 J:5-223                                                                                                                                                                                             ------------------------------------ Pfam domains (4)
           Pfam domains (5) ----Glyco_transf_8-1ll0J05 J:5-223                                                                                                                                                                                             ------------------------------------ Pfam domains (5)
           Pfam domains (6) ----Glyco_transf_8-1ll0J06 J:5-223                                                                                                                                                                                             ------------------------------------ Pfam domains (6)
           Pfam domains (7) ----Glyco_transf_8-1ll0J07 J:5-223                                                                                                                                                                                             ------------------------------------ Pfam domains (7)
           Pfam domains (8) ----Glyco_transf_8-1ll0J08 J:5-223                                                                                                                                                                                             ------------------------------------ Pfam domains (8)
           Pfam domains (9) ----Glyco_transf_8-1ll0J09 J:5-223                                                                                                                                                                                             ------------------------------------ Pfam domains (9)
          Pfam domains (10) ----Glyco_transf_8-1ll0J10 J:5-223                                                                                                                                                                                             ------------------------------------ Pfam domains (10)
         Sec.struct. author ..eeeeeee.hhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhh..............hhhhhhhh..hhhhhhhhhhhhh....eeeee...eee...hhhhhhh...eeee.......eeeeeeee..hhhhhhhhhhhhhhhh....hhhhhhhhhh......hhhhh.hhhhhee.hhhhhhhhhhhhhhhhh.eee.....hhhhh.ee....ee..--------hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ll0 J   1 TDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRS--------HPQFLNVWWDIFTTSVVPL 259
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230 |       -|      250         
                                                                                                                                                                                                                                                                 232      241
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 Classification and Annotation

(-) SCOP Domains  (1, 10)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 10)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 10)

Asymmetric Unit
(-)
Clan: GT-A (172)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (GLYG_RABIT | P13280)
molecular function
    GO:0008466    glycogenin glucosyltransferase activity    Catalysis of the reaction: UDP-glucose + glycogenin = UDP + glucosylglycogenin.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
    GO:0005978    glycogen biosynthetic process    The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.

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  1ll0
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GLYG_RABIT | P13280: 1ll2 1ll3 1zct 1zcu 1zcv 1zcy 1zdf 1zdg 3usq 3usr 3v8y 3v8z 3v90 3v91

(-) Related Entries Specified in the PDB File

1ll2 PDB ID 1LL2 IS A 1.90A COMPLEX OF GLYCOGENIN WITH MN2+ AND UDP-GLUCOSE; I222 SPACE GROUP.
1ll3 PDB ID 1LL3 IS A 1.9A APO- ENZYME STRUCTURE OF GLYCOGENIN; I222 SPACE GROUP.