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(-) Description

Title :  STRUCTURE OF Y194F GLYCOGENIN MUTANT TRUNCATED AT RESIDUE 270
 
Authors :  F. M. Issoglio, M. E. Carrizo, J. M. Romero, J. A. Curtino
Date :  23 Nov 11  (Deposition) - 14 Dec 11  (Release) - 21 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  A  (4x)
Keywords :  Glucosyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. M. Issoglio, M. E. Carrizo, J. M. Romero, J. A. Curtino
Mechanisms Of Monomeric And Dimeric Glycogenin Autoglucosylation.
J. Biol. Chem. V. 287 1955 2012
PubMed-ID: 22128147  |  Reference-DOI: 10.1074/JBC.M111.287813

(-) Compounds

Molecule 1 - GLYCOGENIN-1
    Chains: A
    EC Number: 2.4.1.186
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: ROSETTA(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GYG, GYG1
    Mutation: YES
    Organism Common: RABBIT
    Organism Scientific: ORYCTOLAGUS CUNICULUS
    Organism Taxid: 9986
    Synonym: GN-1, GN1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A
Biological Unit 2 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL4Ligand/IonGLYCEROL
Biological Unit 2 (1, 8)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL8Ligand/IonGLYCEROL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:129 , CYS A:130 , ASN A:167 , ASN A:171 , PHE A:203 , HOH A:295 , HOH A:389BINDING SITE FOR RESIDUE GOL A 271
2AC2SOFTWAREGLU A:117 , GLU A:118 , LEU A:119 , PHE A:170 , SER A:172 , LYS A:180 , HOH A:276 , HOH A:311BINDING SITE FOR RESIDUE GOL A 272
3AC3SOFTWAREILE A:178 , HOH A:274BINDING SITE FOR RESIDUE CL A 273

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3USR)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Glu A:118 -Leu A:119

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3USR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3USR)

(-) Exons   (0, 0)

(no "Exon" information available for 3USR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:259
 aligned with GLYG_RABIT | P13280 from UniProtKB/Swiss-Prot  Length:333

    Alignment length:266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      
           GLYG_RABIT     1 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLLQQFGL 266
               SCOP domains d3usra_ A: Glycogenin                                                                                                                                                                                                                                                      SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.hhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhh.eeee.........hhhhhhhh..hhhhhhhhhhhhh....eeeee...eee...hhhhhhh...eeee.......eeeeeeee..hhhhhhhhhhhhhhhh....hhhhhhhhhh......hhhhh.hhhhhee.hhhhhhhhhhhhhhhhh.eee.....hhhhheee....eee.-------..hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3usr A   0 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIFSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRS-------THPQFLNVWWDIFTTSVVPLLQQFGL 265
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229  |      -|      249       259      
                                                                                                                                                                                                                                                                  232     240
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3USR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3USR)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A   (GLYG_RABIT | P13280)
molecular function
    GO:0008466    glycogenin glucosyltransferase activity    Catalysis of the reaction: UDP-glucose + glycogenin = UDP + glucosylglycogenin.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
    GO:0005978    glycogen biosynthetic process    The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.

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  3usr
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  GLYG_RABIT | P13280
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  2.4.1.186
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GLYG_RABIT | P13280: 1ll0 1ll2 1ll3 1zct 1zcu 1zcv 1zcy 1zdf 1zdg 3usq 3v8y 3v8z 3v90 3v91

(-) Related Entries Specified in the PDB File

1ll0 CRYSTAL STRUCTURE OF RABBIT MUSCLE GLYCOGENIN
1ll2 CRYSTAL STRUCTURE OF RABBIT MUSCLE GLYCOGENIN COMPLEXED WITH UDP-GLUCOSE AND MANGANESE
1ll3 CRYSTAL STRUCTURE OF RABBIT MUSCLE GLYCOGENIN
1zct STRUCTURE OF GLYCOGENIN TRUNCATED AT RESIDUE 270 IN A COMPLEX WITH UDP
1zcu APO FORM OF THE 162S MUTANT OF GLYCOGENIN
1zcv APO FORM OF A MUTANT OF GLYCOGENIN IN WHICH ASP159 IS REPLACED BY ASN
1zcy APO FORM OF A MUTANT OF GLYCOGENIN IN WHICH ASP159 IS REPLACED BY SER
3unq