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(-) Description

Title :  THE INTERACTION BETWEEN MRNA AND TRNA (MODEL 3)
 
Authors :  C. Q. Liu, S. X. Liu, S. Q. Liu
Date :  20 Oct 01  (Deposition) - 21 Nov 01  (Release) - 21 Nov 01  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,B,C
Keywords :  Interaction, Mrna, Trna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Q. Liu, S. X. Liu, S. Q. Liu, M. W. Jia, J. He
The Research Of Mrna'S Conformation And Interaction Between Mrna And Trna In Translation
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MRNA
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - P-SITE TRNA
    Chains: B
    Engineered: YES
    Synthetic: YES
 
Molecule 3 - A-SITE TRNA
    Chains: C
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (10, 26)

Theoretical Model (10, 26)
No.NameCountTypeFull Name
11MA2Mod. Nucleotide6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
22MG2Mod. Nucleotide2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
35MC4Mod. Nucleotide5-METHYLCYTIDINE-5'-MONOPHOSPHATE
45MU2Mod. Nucleotide5-METHYLURIDINE 5'-MONOPHOSPHATE
57MG2Mod. Nucleotide7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE
6H2U4Mod. Nucleotide5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
7M2G2Mod. NucleotideN2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
8OMC2Mod. NucleotideO2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
9PSU4Mod. NucleotidePSEUDOURIDINE-5'-MONOPHOSPHATE
10YG2Mod. ResidueWYBUTOSINE

(-) Sites  (0, 0)

(no "Site" information available for 1K7O)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1K7O)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1K7O)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1K7O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1K7O)

(-) Exons   (0, 0)

(no "Exon" information available for 1K7O)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:RNA  Length:44
                                                                           
                  1k7o A 31 CUCUGUUUACCAGGUCAGGUCCGGAAGGAAGCAGCCAAGGCAGA 74
                                    40        50        60        70    


Chain B from PDB  Type:RNA  Length:76
                                                                                                           
                  1k7o B  1 GCGGAUUUAgCUCAGuuGGGAGAGCgCCAGAcUCUUgAucUGGAGgUCcUGUGuuCGaUCCACAGAAUUCGCACCA 76
                                    10     || 20     |  30 |    | 40     |  50   ||  |60        70      
                                    10-2MG ||       26-M2G |    | ||     |  |    ||  |                  
                                          16-H2U          32-OMC| ||     |  |    ||  |                  
                                           17-H2U              37-YG     |  |    ||  |                  
                                                                 39-PSU  |  |    ||  |                  
                                                                  40-5MC |  |    ||  |                  
                                                                        46-7MG   ||  |                  
                                                                           49-5MC||  |                  
                                                                                54-5MU                  
                                                                                 55-PSU                 


Chain C from PDB  Type:RNA  Length:76
                                                                                                           
                  1k7o C  1 GCGGAUUUAgCUCAGuuGGGAGAGCgCCAGAcUUUCgAucUGGAGgUCcUGUGuuCGaUCCACAGAAUUCGCACCA 76
                                    10     || 20     |  30 |    | 40     |  50   ||  |60        70      
                                    10-2MG ||       26-M2G |    | ||     |  |    ||  |                  
                                          16-H2U          32-OMC| ||     |  |    ||  |                  
                                           17-H2U              37-YG     |  |    ||  |                  
                                                                 39-PSU  |  |    ||  |                  
                                                                  40-5MC |  |    ||  |                  
                                                                        46-7MG   ||  |                  
                                                                           49-5MC||  |                  
                                                                                54-5MU                  
                                                                                 55-PSU
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1K7O)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1K7O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1K7O)

(-) Gene Ontology  (0, 0)

Theoretical Model(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 1K7O)

(-) Related Entries Specified in the PDB File

1duh 1DUH IS THE CRYSTAL SINGLE-STRANDED STRUCTURE OF THE CONSERVED DOMAIN IV OF E. COLI
1ehz 1EZH IS THE CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRNA
1k7o THE INTERACTION BETWEEN MRNA AND TRNA (MODEL 3)
1k7p THE INTERACTION BETWEEN MRNA AND TRNA (MODEL 4)
1k7r THE INTERACTION BETWEEN MRNA AND TRNA (MODEL 1)