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Sequence, Chains, Asymmetric and Biological Units

Title THE INTERACTION BETWEEN MRNA AND TRNA (MODEL 3)
Keywords INTERACTION, MRNA, TRNA
Experiment theoretical model
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1K7O     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 44 1422 0
2  RNA    B 76 2025 475
3  RNA    C 76 2025 475
total       196 5472 950

Nucleic acids
Unit 1 C31 U32 C33 U34 G35 U36 U37 U38 A39 C40 C41 A42 G43 G44 U45 C46 A47 G48 G49 U50 C51 C52 G53 G54 A55 A56 G57 G58 A59 A60 G61 C62 A63 G64 C65 C66 A67 A68 G69 G70 C71 A72 G73 A74
Unit 2 G1 C2 G3 G4 A5 U6 U7 U8 A9 2MG10 C11 U12 C13 A14 G15 H2U16 H2U17 G18 G19 G20 A21 G22 A23 G24 C25 M2G26 C27 C28 A29 G30 A31 OMC32 U33 C34 U35 U36 YG37 A38 PSU39 5MC40 U41 G42 G43 A44 G45 7MG46 U47 C48 5MC49 U50 G51 U52 G53 5MU54 PSU55 C56 G57 1MA58 U59 C60 C61 A62 C63 A64 G65 A66 A67 U68 U69 C70 G71 C72 A73 C74 C75 A76
Unit 3 G1 C2 G3 G4 A5 U6 U7 U8 A9 2MG10 C11 U12 C13 A14 G15 H2U16 H2U17 G18 G19 G20 A21 G22 A23 G24 C25 M2G26 C27 C28 A29 G30 A31 OMC32 U33 U34 U35 C36 YG37 A38 PSU39 5MC40 U41 G42 G43 A44 G45 7MG46 U47 C48 5MC49 U50 G51 U52 G53 5MU54 PSU55 C56 G57 1MA58 U59 C60 C61 A62 C63 A64 G65 A66 A67 U68 U69 C70 G71 C72 A73 C74 C75 A76

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany