1EHZ | TR0001 - JenaLib

Title :   THE CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRNA AT 1.93 A RESOLUTION

Authors :   H. Shi, P. B. Moore

Date :   23 Feb 00 (Deposition) - 02 Oct 00 (Release) - 21 Dec 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.93

Chains :   Asym./Biol. Unit : A

Keywords :   Trna, Yeast, Phenylalanine, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Shi, P. B. Moore
The Crystal Structure Of Yeast Phenylalanine Trna At 1. 93 A Resolution: A Classic Structure Revisited
Rna V. 6 1091 2000
PubMed-ID: 10943889 | Reference-DOI: 10.1017/S1355838200000364

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (13, 23)

Asymmetric/Biological Unit (13, 23)

No.	Name	Count	Type	Full Name
1	1MA	1	Mod. Nucleotide	6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
2	2MG	1	Mod. Nucleotide	2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
3	5MC	2	Mod. Nucleotide	5-METHYLCYTIDINE-5'-MONOPHOSPHATE
4	5MU	1	Mod. Nucleotide	5-METHYLURIDINE 5'-MONOPHOSPHATE
5	7MG	1	Mod. Nucleotide	7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE
6	H2U	2	Mod. Nucleotide	5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
7	M2G	1	Mod. Nucleotide	N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
8	MG	6	Ligand/Ion	MAGNESIUM ION
9	MN	3	Ligand/Ion	MANGANESE (II) ION
10	OMC	1	Mod. Nucleotide	O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
11	OMG	1	Mod. Nucleotide	O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
12	PSU	2	Mod. Nucleotide	PSEUDOURIDINE-5'-MONOPHOSPHATE
13	YYG	1	Mod. Nucleotide	4-(3-[5-O-PHOSPHONORIBOFURANOSYL]-4,6-DIMETHYL-8-OXO-4,8-DIHYDRO-3H-1,3,4,5,7A-PENTAAZA-S-INDACEN-YLAMINO-BUTYRIC ACID METHYL ESTER

Sites (9, 9)

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	YYG A:37 , A A:38	BINDING SITE FOR RESIDUE MG A 590
2	AC2	SOFTWARE	H2U A:16 , G A:19 , HOH A:708 , HOH A:709 , HOH A:710 , HOH A:711	BINDING SITE FOR RESIDUE MN A 530
3	AC3	SOFTWARE	HOH A:712 , HOH A:713 , HOH A:714 , HOH A:715 , HOH A:716	BINDING SITE FOR RESIDUE MG A 510
4	AC4	SOFTWARE	G A:1 , HOH A:717 , HOH A:718 , HOH A:719 , HOH A:720 , HOH A:721	BINDING SITE FOR RESIDUE MN A 520
5	AC5	SOFTWARE	G A:20 , A A:21 , HOH A:722 , HOH A:723 , HOH A:724	BINDING SITE FOR RESIDUE MG A 540
6	AC6	SOFTWARE	U A:8 , U A:12 , HOH A:725 , HOH A:726 , HOH A:727 , HOH A:728 , HOH A:729 , HOH A:730	BINDING SITE FOR RESIDUE MG A 560
7	AC7	SOFTWARE	HOH A:731 , HOH A:732 , HOH A:733 , HOH A:734 , HOH A:735 , HOH A:736	BINDING SITE FOR RESIDUE MG A 570
8	AC8	SOFTWARE	U A:7 , A A:14 , HOH A:611 , HOH A:737	BINDING SITE FOR RESIDUE MG A 580
9	AC9	SOFTWARE	G A:15 , HOH A:738 , HOH A:739 , HOH A:740 , HOH A:741 , HOH A:742	BINDING SITE FOR RESIDUE MN A 550

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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Exons (0, 0)

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Asymmetric/Biological Unit

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Chain A from PDB  Type:RNA  Length:76
                                                                                                           
                  1ehz A  1 GCGGAUUUAgCUCAGuuGGGAGAGCgCCAGAcUgAAgAucUGGAGgUCcUGUGuuCGaUCCACAGAAUUCGCACCA 76
                                    10     || 20     |  30 | |  | 40     |  50   ||  |60        70      
                                    10-2MG ||       26-M2G | |  | ||     |  |    55-PSU                 
                                          16-H2U          32-OMC| ||     |  |    |  58-1MA              
                                           17-H2U           34-OMG||     |  |    |                      
                                                               37-YYG    |  |    |                      
                                                                 39-PSU  |  |    |                      
                                                                  40-5MC |  |    |                      
                                                                        46-7MG   |                      
                                                                           49-5MC|                      
                                                                                54-5MU

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