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(-) Description

Title :  CRYSTAL STRUCTURE OF ORTHORHOMBIC FORM OF D90E MUTANT OF ESCHERICHIA COLI L-ASPARAGINASE II
 
Authors :  D. Borek, M. Kozak, M. Jaskolski
Date :  04 Jul 01  (Deposition) - 09 Sep 03  (Release) - 19 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F  (2x)
Keywords :  L-Asparaginase, Leukemia, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Borek, M. Kozak, J. Pei, M. Jaskolski
Crystal Structure Of Active Site Mutant Of Antileukemic L-Asparaginase Reveals Conserved Zinc-Binding Site.
Febs J. V. 281 4097 2014
PubMed-ID: 25040257  |  Reference-DOI: 10.1111/FEBS.12906
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - L-ASPARAGINASE II
    Chains: A, B, C, D, E, F
    EC Number: 3.5.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: L-ASNASE II

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABCD  
Biological Unit 2 (2x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1JJA)

(-) Sites  (0, 0)

(no "Site" information available for 1JJA)

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:77 -A:105
2B:77 -B:105
3C:77 -C:105
4D:77 -D:105
5E:77 -E:105
6F:77 -F:105

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1JJA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1JJA)

(-) PROSITE Motifs  (3, 18)

Asymmetric Unit (3, 18)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ASN_GLN_ASE_3PS51732 Asparaginase / glutaminase domain profile.ASPG2_ECOLI24-348
 
 
 
 
 		  6A:2-326
B:2-326
C:2-326
D:2-326
E:2-326
F:2-326
2ASN_GLN_ASE_1PS00144 Asparaginase / glutaminase active site signature 1.ASPG2_ECOLI28-36
 
 
 
 
 		  6A:6-14
B:6-14
C:6-14
D:6-14
E:6-14
F:6-14
3ASN_GLN_ASE_2PS00917 Asparaginase / glutaminase active site signature 2.ASPG2_ECOLI104-114
 
 
 
 
 		  6A:82-92
B:82-92
C:82-92
D:82-92
E:82-92
F:82-92
Biological Unit 1 (3, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ASN_GLN_ASE_3PS51732 Asparaginase / glutaminase domain profile.ASPG2_ECOLI24-348
 
 
 
 
 		  4A:2-326
B:2-326
C:2-326
D:2-326
-
-
2ASN_GLN_ASE_1PS00144 Asparaginase / glutaminase active site signature 1.ASPG2_ECOLI28-36
 
 
 
 
 		  4A:6-14
B:6-14
C:6-14
D:6-14
-
-
3ASN_GLN_ASE_2PS00917 Asparaginase / glutaminase active site signature 2.ASPG2_ECOLI104-114
 
 
 
 
 		  4A:82-92
B:82-92
C:82-92
D:82-92
-
-
Biological Unit 2 (3, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ASN_GLN_ASE_3PS51732 Asparaginase / glutaminase domain profile.ASPG2_ECOLI24-348
 
 
 
 
 		  4-
-
-
-
E:2-326
F:2-326
2ASN_GLN_ASE_1PS00144 Asparaginase / glutaminase active site signature 1.ASPG2_ECOLI28-36
 
 
 
 
 		  4-
-
-
-
E:6-14
F:6-14
3ASN_GLN_ASE_2PS00917 Asparaginase / glutaminase active site signature 2.ASPG2_ECOLI104-114
 
 
 
 
 		  4-
-
-
-
E:82-92
F:82-92

(-) Exons   (0, 0)

(no "Exon" information available for 1JJA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:309
 aligned with ASPG2_ECOLI | P00805 from UniProtKB/Swiss-Prot  Length:348

    Alignment length:326
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342      
          ASPG2_ECOLI    23 LPNITILATGGTIAGGGDSATKSNYTVGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQY 348
               SCOP domains d1jjaa_ A: Aspar                 aginase type II                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1jjaA01 A:1-212                   [code=3.40.50.1170, no name defined]                                                                                                                                              1jjaA02 A:213-325  [code=3.40.50.40, no name defined]                                                            - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee........-----------------hhhhhhhhhhhh.eeeeee....hhhhhhhhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhh.....eeee...........hhhhhhhhhhhhhhhhhhh....eeee..eeee...eee........eee......eeee..eeee.......hhhhh............eeeee......hhhhhhhhhh...eeeeee......hhhhhhhhhhhhhh..eeeeee.............hhhhhheee....hhhhhhhhhhhhh....hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -ASN_GLN_ASE_3  PDB: A:2-326 UniProt: 24-348                                                                                                                                                                                                                                                                                           PROSITE (1)
                PROSITE (2) -----ASN_GLN_A-------------------------------------------------------------------ASN_GLN_ASE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jja A   1 LPNITILATGGTIAGG-----------------NLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTETMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQY 326
                                    10     |   -         -   |    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320      
                                          16                34                                                                                                                                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:304
 aligned with ASPG2_ECOLI | P00805 from UniProtKB/Swiss-Prot  Length:348

    Alignment length:326
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342      
          ASPG2_ECOLI    23 LPNITILATGGTIAGGGDSATKSNYTVGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQY 348
               SCOP domains d1jjab_ B: Aspa                      raginase type II                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1jjaB01 B:1-212                        [code=3.40.50.1170, no name defined]                                                                                                                                         1jjaB02 B:213-325  [code=3.40.50.40, no name defined]                                                            - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.......----------------------.hhhhhhh.eeeeee....hhhhhhhhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhh.....eeee...........hhhhhhhhhhhhhhhhhhh....eeee..eeee...eee........eee......eeee..eeee.......hhhhh............eeeee......hhhhhhhhhh...eeeeee......hhhhhhhhhhhhhh..eeeeee.............hhhhhheee....hhhhhhhhhhhhhh...hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -ASN_GLN_ASE_3  PDB: B:2-326 UniProt: 24-348                                                                                                                                                                                                                                                                                           PROSITE (1)
                PROSITE (2) -----ASN_GLN_A-------------------------------------------------------------------ASN_GLN_ASE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jja B   1 LPNITILATGGTIAG----------------------AVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTETMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQY 326
                                    10    |    -         -       |40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320      
                                         15                     38                                                                                                                                                                                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:326
 aligned with ASPG2_ECOLI | P00805 from UniProtKB/Swiss-Prot  Length:348

    Alignment length:326
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342      
          ASPG2_ECOLI    23 LPNITILATGGTIAGGGDSATKSNYTVGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQY 348
               SCOP domains d1jjac_ C: Asparaginase type II                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 1jjaC01 C:1-212  [code=3.40.50.1170, no name defined]                                                                                                                                                               1jjaC02 C:213-326  [code=3.40.50.40, no name defined]                                                              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...............hhhhhhhhhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhh.....eeee...........hhhhhhhhhhhhhhhhhhh....eeee..eeee...eee........eee......eeee..eeee.......hhhhh............eeeee......hhhhhhhhhh...eeeeee......hhhhhhhhhhhhhh..eeeeee.............hhhhhheee....hhhhhhhhhhhhhhhh.hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -ASN_GLN_ASE_3  PDB: C:2-326 UniProt: 24-348                                                                                                                                                                                                                                                                                           PROSITE (1)
                PROSITE (2) -----ASN_GLN_A-------------------------------------------------------------------ASN_GLN_ASE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jja C   1 LPNITILATGGTIAGGGDSATKSNYTVGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTETMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQY 326
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320      


Chain D from PDB  Type:PROTEIN  Length:307
 aligned with ASPG2_ECOLI | P00805 from UniProtKB/Swiss-Prot  Length:348

    Alignment length:326
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342      
          ASPG2_ECOLI    23 LPNITILATGGTIAGGGDSATKSNYTVGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQY 348
               SCOP domains d1jjad_ D: Aspa                   raginase type II                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1jjaD01 D:1-212                     [code=3.40.50.1170, no name defined]                                                                                                                                            1jjaD02 D:213-325  [code=3.40.50.40, no name defined]                                                            - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.......-------------------....hhhhhhh.eeeeee....hhhhhhhhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhh.....eeee...........hhhhhhhhhhhhhhhhhhh....eeee..eeee...eee........eee......eeee..eeee.......hhhhh............eeeee......hhhhhhhhhh...eeeeee......hhhhhhhhhhhh....eeeeee.............hhhhhh.ee....hhhhhhhhhhhhh....hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -ASN_GLN_ASE_3  PDB: D:2-326 UniProt: 24-348                                                                                                                                                                                                                                                                                           PROSITE (1)
                PROSITE (2) -----ASN_GLN_A-------------------------------------------------------------------ASN_GLN_ASE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jja D   1 LPNITILATGGTIAG-------------------LVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTETMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQY 326
                                    10    |    -         -    |   40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320      
                                         15                  35                                                                                                                                                                                                                                                                                                   


Chain E from PDB  Type:PROTEIN  Length:307
 aligned with ASPG2_ECOLI | P00805 from UniProtKB/Swiss-Prot  Length:348

    Alignment length:326
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342      
          ASPG2_ECOLI    23 LPNITILATGGTIAGGGDSATKSNYTVGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQY 348
               SCOP domains d1jjae_ E: Aspa                   raginase type II                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1jjaE01 E:1-212                     [code=3.40.50.1170, no name defined]                                                                                                                                            1jjaE02 E:213-325  [code=3.40.50.40, no name defined]                                                            - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.......-------------------......hhhhhheeeeee....hhhhhhhhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhh.....eeee...........hhhhhhhhhhhhhhh........eeee..eeee...eee........eee......eeee..eeee.......hhhhh............eeeee......hhhhhhhhhh...eeeeee......hhhhhhhhhhhhhh..eeeeee.............hhhhhheee....hhhhhhhhhhhhh....hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -ASN_GLN_ASE_3  PDB: E:2-326 UniProt: 24-348                                                                                                                                                                                                                                                                                           PROSITE (1)
                PROSITE (2) -----ASN_GLN_A-------------------------------------------------------------------ASN_GLN_ASE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jja E   1 LPNITILATGGTIAG-------------------LVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTETMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQY 326
                                    10    |    -         -    |   40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320      
                                         15                  35                                                                                                                                                                                                                                                                                                   


Chain F from PDB  Type:PROTEIN  Length:320
 aligned with ASPG2_ECOLI | P00805 from UniProtKB/Swiss-Prot  Length:348

    Alignment length:326
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342      
          ASPG2_ECOLI    23 LPNITILATGGTIAGGGDSATKSNYTVGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQY 348
               SCOP domains d1jjaf_ F: Asparag  inase typ    e II                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1jjaF01 F:1-212  [  code=3.40    .50.1170, no name defined]                                                                                                                                                         1jjaF02 F:213-324  [code=3.40.50.40, no name defined]                                                           -- CATH domains
           Pfam domains (1) --Asparaginase-1jj  aF01 F:3-    320                                                                                                                                                                                                                                                                                            ------ Pfam domains (1)
           Pfam domains (2) --Asparaginase-1jj  aF02 F:3-    320                                                                                                                                                                                                                                                                                            ------ Pfam domains (2)
           Pfam domains (3) --Asparaginase-1jj  aF03 F:3-    320                                                                                                                                                                                                                                                                                            ------ Pfam domains (3)
           Pfam domains (4) --Asparaginase-1jj  aF04 F:3-    320                                                                                                                                                                                                                                                                                            ------ Pfam domains (4)
           Pfam domains (5) --Asparaginase-1jj  aF05 F:3-    320                                                                                                                                                                                                                                                                                            ------ Pfam domains (5)
           Pfam domains (6) --Asparaginase-1jj  aF06 F:3-    320                                                                                                                                                                                                                                                                                            ------ Pfam domains (6)
         Sec.struct. author ..eeeeee..........--.........----.....hhhhhhh.eeeeee....hhhhhhhhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhh.....eeee...........hhhhhhhhhhhhhhhhhhh....eeee..eeee...eee........eee......eeee..eeee.......hhhhh............eeeee......hhhhhhhhhh...eeeeee......hhhhhhhhhhhhh...eeeeee.............hhhhhh.ee....hhhhhhhhhhhhhh...hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -ASN_GLN_ASE_3  PDB: F:2-326 UniProt: 24-348                                                                                                                                                                                                                                                                                           PROSITE (1)
                PROSITE (2) -----ASN_GLN_A-------------------------------------------------------------------ASN_GLN_ASE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jja F   1 LPNITILATGGTIAGGGD--TKSNYTVGK----NLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTETMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQY 326
                                    10       | -|       |-   |    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320      
                                            18 21      29   34
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: no clan defined [family: Asparaginase] (13)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (ASPG2_ECOLI | P00805)
molecular function
    GO:0004067    asparaginase activity    Catalysis of the reaction: L-asparagine + H2O = L-aspartate + NH3.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
biological process
    GO:0006528    asparagine metabolic process    The chemical reactions and pathways involving asparagine, 2-amino-3-carbamoylpropanoic acid.
    GO:0006520    cellular amino acid metabolic process    The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
    GO:0051289    protein homotetramerization    The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0030288    outer membrane-bounded periplasmic space    The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ASPG2_ECOLI | P00805: 1ho3 1ihd 1jaz 1nns 3eca 4eca

(-) Related Entries Specified in the PDB File

1agx STRUCTURE OF ACINETOBACTER GLUTAMINASIFICANS GLUTAMINASE ASPARAGINASE
1djo STRUCTURE OF PSEUDOMONAS 7A GLUTAMINASE-ASPARAGINASE WITH THE INHIBITOR DONV COVALENTLY BOUND IN THE ACTIVE SITE
1djp STRUCTURE OF PSEUDOMONAS 7A GLUTAMINASE-ASPARAGINASE WITH THE INHIBITOR DON COVALENTLY BOUND IN THE ACTIVE SITE
1hfj ASPARAGINASE FROM ERWINIA CHRYSANTHEMI, HEXAGONAL FORM WITH SULFATE
1hfk ASPARAGINASE FROM ERWINIA CHRYSANTHEMI, HEXAGONAL FORM WITH WEAK SULFATE
1ho3 STRUCTURE OF Y25F MUTANT OF ESCHERICHIA COLI ASPARAGINASE II
1ihd CRYSTAL STRUCTURE OF TRIGONAL FORM OF D90E MUTANT OF ESCHERICHIA COLI ASPARAGINASE II
1jaz CRYSTAL STRUCTURE OF MONOCLINIC FORM OF D90E MUTANT OF ESCHERICHIA COLI ASPARAGINASE II
1wsa STRUCTURE OF WOLINELLA SUCCINOGENES L-ASPARAGINASE II PRECURSOR
3eca STRUCTURE OF NATIVE ESCHERICHIA COLI ASPARAGINASE II
3pga STRUCTURAL CHARACTERIZATION OF PSEUDOMONAS 7A GLUTAMINASE- ASPARAGINASE
4eca STRUCTURE OF T89V MUTANT OF ESCHERICHIA COLI ASPARAGINASE II
4pga GLUTAMINASE-ASPARAGINASE FROM PSEUDOMONAS 7A