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Title :   STRUCTURE OF L-ASPARAGINASE II PRECURSOR

Authors :   J. Lubkowski, G. J. Palm, G. L. Gilliland, C. Derst, K. -H. Rohm, A. Wloda

Date :   15 Aug 96 (Deposition) - 01 Apr 97 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)

Keywords :   Hydrolase, Periplasmic (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Lubkowski, G. J. Palm, G. L. Gilliland, C. Derst, K. H. Rohm, A. Wlodawer
Crystal Structure And Amino Acid Sequence Of Wolinella Succinogenes L-Asparaginase.
Eur. J. Biochem. V. 241 201 1996
PubMed-ID: 8898907 | Reference-DOI: 10.1111/J.1432-1033.1996.0201T.X

Molecule 1 - ASPARAGINE AMIDOHYDROLASE
	Atcc	:	29543
	Chains	:	A, B
	EC Number	:	3.5.1.1
	Organism Scientific	:	WOLINELLA SUCCINOGENES
	Organism Taxid	:	844
	Synonym	:	ASPARAGINASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1WSA)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	A	AUTHOR	ILE A:15 , TYR A:27 , THR A:93 , ASP A:94 , LYS A:166	ACTIVE SITE IN MONOMER A.
2	B	AUTHOR	ILE B:15 , TYR B:27 , THR B:93 , ASP B:94 , LYS B:166	ACTIVE SITE IN MONOMER B.

(no "SS Bond" information available for 1WSA)

(no "Cis Peptide Bond" information available for 1WSA)

(no "SAP(SNP)/Variant" information available for 1WSA)

Asymmetric Unit (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ASN_GLN_ASE_3	PS51732	Asparaginase / glutaminase domain profile.	ASPG_WOLSU	4-330	2	A:4-330 B:4-330
2	ASN_GLN_ASE_1	PS00144	Asparaginase / glutaminase active site signature 1.	ASPG_WOLSU	8-16	2	A:8-16 B:8-16
3	ASN_GLN_ASE_2	PS00917	Asparaginase / glutaminase active site signature 2.	ASPG_WOLSU	86-96	2	A:86-96 B:86-96

Biological Unit 1 (3, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ASN_GLN_ASE_3	PS51732	Asparaginase / glutaminase domain profile.	ASPG_WOLSU	4-330	4	A:4-330 B:4-330
2	ASN_GLN_ASE_1	PS00144	Asparaginase / glutaminase active site signature 1.	ASPG_WOLSU	8-16	4	A:8-16 B:8-16
3	ASN_GLN_ASE_2	PS00917	Asparaginase / glutaminase active site signature 2.	ASPG_WOLSU	86-96	4	A:86-96 B:86-96

(no "Exon" information available for 1WSA)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:319
 aligned with ASPG_WOLSU | P50286 from UniProtKB/Swiss-Prot  Length:330

    Alignment length:328
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322        
           ASPG_WOLSU     3 KPQVTILATGGTIAGSGESSVKSSYSAGAVTVDKLLAAVPAINDLATIKGEQISSIGSQEMTGKVWLKLAKRVNELLAQKETEAVIITHGTDTMEETAFFLNLTVKSQKPVVLVGAMRSGSSMSADGPMNLYNAVNVAINKASTNKGVVIVMNDEIHAAREATKLNTTAVNAFASPNTGKIGTVYYGKVEYFTQSVRPHTLASEFDISKIEELPRVDILYAHPDDTDVLVNAALQAGAKGIIHAGMGNGNPFPLTQNALEKAAKSGVVVARSSRVGSGSTTQEAEVDDKKLGFVATESLNPQKARVLLMLALTKTSDREAIQKIFSTY 330
               SCOP domains d1wsaa_ A: Aspa         raginase type II                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1wsaA01 A:3-216           [code=3.40.50.1170, no name defined]                                                                                                                                                        1wsaA02 A:217-329  [code=3.40.50.40, no name defined]                                                            - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.......---------.....hhhhhhhhh.hhhhh.eeeeeee.....hhh..hhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhh......eeee............hhhhhhhhhhhh..hhh....eeeee..eeee.......................eeee..eeee........hhh.............eeeee.......hhhhhhhh....eeeeee.......hhhhhhhhhhhh...eeeeee..............hhhh.eee.....hhhhhhhhhhhhh....hhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -ASN_GLN_ASE_3  PDB: A:4-330 UniProt: 4-330                                                                                                                                                                                                                                                                                              PROSITE (1)
                PROSITE (2) -----ASN_GLN_A---------------------------------------------------------------------ASN_GLN_ASE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wsa A   3 KPQVTILATGGTIAG---------YSAGAVTVDKLLAAVPAINDLATIKGEQISSIGSQEMTGKVWLKLAKRVNELLAQKETEAVIITHGTDTMEETAFFLNLTVKSQKPVVLVGAMRPGSSMSADGPMNLYNAVNVAINKASTNKGVVIVMNDEIHAAREATKLNTTAVNAFASPNTGKIGTVYYGKVEYFTQSVRPHTLASEFDISKIEELPRVDILYAHPDDTDVLVNAALQAGAKGIIHAGMGNGNPFPLTQNALEKAAKSGVVVARSSRVGSGSTTQEAEVDDKKLGFVATESLNPQKARVLLMLALTKTSDREAIQKIFSTY 330
                                    12    |    -    |   32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322        
                                         17        27

Chain B from PDB  Type:PROTEIN  Length:320
 aligned with ASPG_WOLSU | P50286 from UniProtKB/Swiss-Prot  Length:330

    Alignment length:328
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322        
           ASPG_WOLSU     3 KPQVTILATGGTIAGSGESSVKSSYSAGAVTVDKLLAAVPAINDLATIKGEQISSIGSQEMTGKVWLKLAKRVNELLAQKETEAVIITHGTDTMEETAFFLNLTVKSQKPVVLVGAMRSGSSMSADGPMNLYNAVNVAINKASTNKGVVIVMNDEIHAAREATKLNTTAVNAFASPNTGKIGTVYYGKVEYFTQSVRPHTLASEFDISKIEELPRVDILYAHPDDTDVLVNAALQAGAKGIIHAGMGNGNPFPLTQNALEKAAKSGVVVARSSRVGSGSTTQEAEVDDKKLGFVATESLNPQKARVLLMLALTKTSDREAIQKIFSTY 330
               SCOP domains d1wsab_ B: Aspar        aginase type II                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1wsaB01 B:3-216          [code=3.40.50.1170, no name defined]                                                                                                                                                         1wsaB02 B:217-329  [code=3.40.50.40, no name defined]                                                            - CATH domains
           Pfam domains (1) --Asparaginase-1        wsaB01 B:5-324                                                                                                                                                                                                                                                                                            ------ Pfam domains (1)
           Pfam domains (2) --Asparaginase-1        wsaB02 B:5-324                                                                                                                                                                                                                                                                                            ------ Pfam domains (2)
         Sec.struct. author .eeeeeee........--------.....hhhhhhhhh.hhhhh.eeeeeee.....hhh..hhhhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhh.......eeee............hhhhhhhhhhhh.........eeeee..eeee.......................eeee..eeee........hhh.............eeeee.......hhhhhhhh....eeeeee.......hhhhhhhhhhhh...eeeeee..............hhhh.eee.....hhhhhhhhhhhhhh...hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -ASN_GLN_ASE_3  PDB: B:4-330 UniProt: 4-330                                                                                                                                                                                                                                                                                              PROSITE (1)
                PROSITE (2) -----ASN_GLN_A---------------------------------------------------------------------ASN_GLN_ASE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wsa B   3 KPQVTILATGGTIAGS--------YSAGAVTVDKLLAAVPAINDLATIKGEQISSIGSQEMTGKVWLKLAKRVNELLAQKETEAVIITHGTDTMEETAFFLNLTVKSQKPVVLVGAMRPGSSMSADGPMNLYNAVNVAINKASTNKGVVIVMNDEIHAAREATKLNTTAVNAFASPNTGKIGTVYYGKVEYFTQSVRPHTLASEFDISKIEELPRVDILYAHPDDTDVLVNAALQAGAKGIIHAGMGNGNPFPLTQNALEKAAKSGVVVARSSRVGSGSTTQEAEVDDKKLGFVATESLNPQKARVLLMLALTKTSDREAIQKIFSTY 330
                                    12     |   -    |   32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322        
                                          18       27

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Glutaminase/Asparaginase (37)

Superfamily: Glutaminase/Asparaginase (37)

Family: Glutaminase/Asparaginase (33)

Protein domain: Asparaginase type II (17)

Wolinella succinogenes [TaxId: 844] (1)

1a	d1wsaa_	A:
1b	d1wsab_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.1170, no name defined] (27)

Wolinella succinogenes. Organism_taxid: 844. (1)

1a	1wsaB01	B:3-216
1b	1wsaA01	A:3-216

Homologous Superfamily: [code=3.40.50.40, no name defined] (27)

Wolinella succinogenes. Organism_taxid: 844. (1)

2a	1wsaA02	A:217-329
2b	1wsaB02	B:217-329

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Asparaginase] (13)

Family: Asparaginase (13)

Wolinella succinogenes (1)

1a	Asparaginase-1wsaB01	B:5-324
1b	Asparaginase-1wsaB02	B:5-324

Asymmetric Unit(hide GO term definitions)

Chain A,B (ASPG_WOLSU | P50286)

molecular function
	GO:0004067	asparaginase activity	Catalysis of the reaction: L-asparagine + H2O = L-aspartate + NH3.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
	GO:0006528	asparagine metabolic process	The chemical reactions and pathways involving asparagine, 2-amino-3-carbamoylpropanoic acid.
	GO:0006520	cellular amino acid metabolic process	The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
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		B	[ RasMol ]	+environment [ RasMol ]

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(no "Cis Peptide Bonds" information available for 1wsa)

Biological Unit
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