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1JJA
Biol. Unit 2
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Asym.Unit (298 KB)
Biol.Unit 1 (196 KB)
Biol.Unit 2 (199 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ORTHORHOMBIC FORM OF D90E MUTANT OF ESCHERICHIA COLI L-ASPARAGINASE II
Authors
:
D. Borek, M. Kozak, M. Jaskolski
Date
:
04 Jul 01 (Deposition) - 09 Sep 03 (Release) - 19 Oct 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F (2x)
Keywords
:
L-Asparaginase, Leukemia, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
D. Borek, M. Kozak, J. Pei, M. Jaskolski
Crystal Structure Of Active Site Mutant Of Antileukemic L-Asparaginase Reveals Conserved Zinc-Binding Site.
Febs J. V. 281 4097 2014
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: ASN_GLN_ASE_3 (E:2-326,F:2-326)
2: ASN_GLN_ASE_1 (E:6-14,F:6-14)
3: ASN_GLN_ASE_2 (E:82-92,F:82-92)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ASN_GLN_ASE_3
PS51732
Asparaginase / glutaminase domain profile.
ASPG2_ECOLI
24-348
4
-
-
-
-
E:2-326
F:2-326
2
ASN_GLN_ASE_1
PS00144
Asparaginase / glutaminase active site signature 1.
ASPG2_ECOLI
28-36
4
-
-
-
-
E:6-14
F:6-14
3
ASN_GLN_ASE_2
PS00917
Asparaginase / glutaminase active site signature 2.
ASPG2_ECOLI
104-114
4
-
-
-
-
E:82-92
F:82-92
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1jjaa_ (A:)
1b: SCOP_d1jjab_ (B:)
1c: SCOP_d1jjac_ (C:)
1d: SCOP_d1jjad_ (D:)
1e: SCOP_d1jjae_ (E:)
1f: SCOP_d1jjaf_ (F:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Glutaminase/Asparaginase
(37)
Superfamily
:
Glutaminase/Asparaginase
(37)
Family
:
Glutaminase/Asparaginase
(33)
Protein domain
:
Asparaginase type II
(17)
Escherichia coli [TaxId: 562]
(7)
1a
d1jjaa_
A:
1b
d1jjab_
B:
1c
d1jjac_
C:
1d
d1jjad_
D:
1e
d1jjae_
E:
1f
d1jjaf_
F:
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1jjaF01 (F:1-212)
1b: CATH_1jjaC01 (C:1-212)
1c: CATH_1jjaA01 (A:1-212)
1d: CATH_1jjaD01 (D:1-212)
1e: CATH_1jjaE01 (E:1-212)
1f: CATH_1jjaB01 (B:1-212)
2a: CATH_1jjaF02 (F:213-324)
2b: CATH_1jjaA02 (A:213-325)
2c: CATH_1jjaB02 (B:213-325)
2d: CATH_1jjaD02 (D:213-325)
2e: CATH_1jjaE02 (E:213-325)
2f: CATH_1jjaC02 (C:213-326)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1170, no name defined]
(27)
Escherichia coli. Organism_taxid: 562.
(4)
1a
1jjaF01
F:1-212
1b
1jjaC01
C:1-212
1c
1jjaA01
A:1-212
1d
1jjaD01
D:1-212
1e
1jjaE01
E:1-212
1f
1jjaB01
B:1-212
Homologous Superfamily
:
[code=3.40.50.40, no name defined]
(27)
Escherichia coli. Organism_taxid: 562.
(4)
2a
1jjaF02
F:213-324
2b
1jjaA02
A:213-325
2c
1jjaB02
B:213-325
2d
1jjaD02
D:213-325
2e
1jjaE02
E:213-325
2f
1jjaC02
C:213-326
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Asparaginase_1jjaF01 (F:3-320)
1b: PFAM_Asparaginase_1jjaF02 (F:3-320)
1c: PFAM_Asparaginase_1jjaF03 (F:3-320)
1d: PFAM_Asparaginase_1jjaF04 (F:3-320)
1e: PFAM_Asparaginase_1jjaF05 (F:3-320)
1f: PFAM_Asparaginase_1jjaF06 (F:3-320)
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Clan
:
no clan defined [family: Asparaginase]
(13)
Family
:
Asparaginase
(13)
Escherichia coli (strain K12)
(4)
1a
Asparaginase-1jjaF01
F:3-320
1b
Asparaginase-1jjaF02
F:3-320
1c
Asparaginase-1jjaF03
F:3-320
1d
Asparaginase-1jjaF04
F:3-320
1e
Asparaginase-1jjaF05
F:3-320
1f
Asparaginase-1jjaF06
F:3-320
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Asym.Unit (298 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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