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(-) Description

Title :  20S PROTEASOME IN COMPLEX WITH CALPAIN-INHIBITOR I FROM ARCHAEOGLOBUS FULGIDUS
 
Authors :  M. Groll, H. Brandstetter, H. Bartunik, G. Bourenkow, R. Huber
Date :  08 Jan 03  (Deposition) - 18 Mar 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.83
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,J,K,L,M,N  (2x)
Keywords :  Proteasome, Ubiquitin, 20S, Cp, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Groll, H. Brandstetter, H. Bartunik, G. Bourenkow, R. Huber
Investigations On The Maturation And Regulation Of Archaebacterial Proteasomes
J. Mol. Biol. V. 327 75 2003
PubMed-ID: 12614609  |  Reference-DOI: 10.1016/S0022-2836(03)00080-9

(-) Compounds

Molecule 1 - PROTEASOME ALPHA SUBUNIT
    Chains: A, B, C, D, E, F, G
    EC Number: 3.4.25.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSET6C
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 2234
 
Molecule 2 - PROTEASOME BETA SUBUNIT
    Chains: H, I, J, K, L, M, N
    EC Number: 3.4.25.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSET6C
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 2234

 Structural Features

(-) Chains, Units

  1234567891011121314
Asymmetric Unit : ABCDEFGHIJKLMN
Biological Unit 1 (2x): ABCDEFGHIJKLMN

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric Unit (1, 7)
No.NameCountTypeFull Name
1CIB7Ligand/Ion2-ACETYLAMINO-4-METHYL-PENTANOIC ACID [1-(1-FORMYL-PENTYLCARBAMOYL)-3-METHYL-BUTYL]-AMIDE
Biological Unit 1 (1, 14)
No.NameCountTypeFull Name
1CIB14Ligand/Ion2-ACETYLAMINO-4-METHYL-PENTANOIC ACID [1-(1-FORMYL-PENTYLCARBAMOYL)-3-METHYL-BUTYL]-AMIDE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR H:1 , ALA H:20 , THR H:21 , MET H:22 , ALA H:27 , ALA H:31 , LYS H:33 , THR H:45 , GLY H:47 , SER H:48 , VAL H:49 , ASP I:114 , HOH I:1105BINDING SITE FOR RESIDUE CIB H 1001
2AC2SOFTWARETHR I:1 , ARG I:19 , ALA I:20 , THR I:21 , MET I:22 , ALA I:27 , LYS I:33 , THR I:45 , GLY I:47 , SER I:48 , VAL I:49 , HOH I:1113 , ASP J:114BINDING SITE FOR RESIDUE CIB I 1101
3AC3SOFTWARETHR J:1 , ALA J:20 , THR J:21 , ALA J:27 , LYS J:33 , THR J:45 , GLY J:47 , SER J:48 , VAL J:49 , ASP K:114BINDING SITE FOR RESIDUE CIB J 1201
4AC4SOFTWARETHR K:1 , ALA K:20 , THR K:21 , LYS K:32 , LYS K:33 , THR K:45 , GLY K:47 , SER K:48 , VAL K:49 , HOH K:1303 , ASP L:114BINDING SITE FOR RESIDUE CIB K 1301
5AC5SOFTWARETHR L:1 , ALA L:20 , THR L:21 , ALA L:27 , LYS L:32 , GLY L:47 , SER L:48 , VAL L:49 , ASP M:114 , ILE M:120BINDING SITE FOR RESIDUE CIB L 1401
6AC6SOFTWARETHR M:1 , ALA M:20 , THR M:21 , MET M:22 , ALA M:27 , LYS M:32 , GLY M:47 , SER M:48 , VAL M:49 , ILE N:120BINDING SITE FOR RESIDUE CIB M 1501
7AC7SOFTWAREASP H:114 , THR N:1 , ALA N:20 , THR N:21 , MET N:22 , ALA N:27 , LYS N:33 , THR N:45 , GLY N:47 , SER N:48 , VAL N:49BINDING SITE FOR RESIDUE CIB N 1601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1J2Q)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1J2Q)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1J2Q)

(-) PROSITE Motifs  (2, 14)

Asymmetric Unit (2, 14)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEASOME_BETA_1PS00854 Proteasome beta-type subunits signature.PSB_ARCFU15-62
 
 
 
 
 
 		  7H:4-51
I:4-51
J:4-51
K:4-51
L:4-51
M:4-51
N:4-51
2PROTEASOME_ALPHA_2PS51475 Proteasome alpha-type subunit profile.PSA_ARCFU23-233
 
 
 
 
 
 		  7A:23-233
B:23-233
C:23-233
D:23-233
E:23-233
F:23-233
G:23-233
Biological Unit 1 (2, 28)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEASOME_BETA_1PS00854 Proteasome beta-type subunits signature.PSB_ARCFU15-62
 
 
 
 
 
 		  14H:4-51
I:4-51
J:4-51
K:4-51
L:4-51
M:4-51
N:4-51
2PROTEASOME_ALPHA_2PS51475 Proteasome alpha-type subunit profile.PSA_ARCFU23-233
 
 
 
 
 
 		  14A:23-233
B:23-233
C:23-233
D:23-233
E:23-233
F:23-233
G:23-233

(-) Exons   (0, 0)

(no "Exon" information available for 1J2Q)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:237
 aligned with PSA_ARCFU | O29760 from UniProtKB/Swiss-Prot  Length:246

    Alignment length:237
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       
           PSA_ARCFU     10 RAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK  246
               SCOP domains d1j2qa_ A: Proteasome alpha subunit (non-catalytic)                                                                                                                                                                                           SCOP domains
               CATH domains 1j2qA00 A:10-233M Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhh...eeeeee..eeeeeee...............eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..........eeeeeeee...eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhh.eeeeeee......ee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------PROTEASOME_ALPHA_2  PDB: A:23-233 UniProt: 23-233                                                                                                                                                                  ------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1j2q A   10 RAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 233M
                                    19        29        39        49        59        69        79        89        99       109       119       129       139    || 150       160       170       180       190       200       210       220|      229    ||233F|||||||
                                                                                                                                                                144|                                                                       220A          233A|||||233J|||
                                                                                                                                                                 146                                                                                      233B|||||233K||
                                                                                                                                                                                                                                                           233C|||||233L|
                                                                                                                                                                                                                                                            233D|||||233M
                                                                                                                                                                                                                                                             233E||||    
                                                                                                                                                                                                                                                              233F|||    
                                                                                                                                                                                                                                                               233G||    
                                                                                                                                                                                                                                                                233H|    
                                                                                                                                                                                                                                                                 233I    


Chain B from PDB  Type:PROTEIN  Length:237
 aligned with PSA_ARCFU | O29760 from UniProtKB/Swiss-Prot  Length:246

    Alignment length:237
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       
           PSA_ARCFU     10 RAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK  246
               SCOP domains d1j2qb_ B: Proteasome alpha subunit (non-catalytic)                                                                                                                                                                                           SCOP domains
               CATH domains 1j2qB00 B:10-233M Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhh...eeeeee..eeeeeee...............eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..........eeeeeeee...eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh....hhh.eeeeeee......ee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------PROTEASOME_ALPHA_2  PDB: B:23-233 UniProt: 23-233                                                                                                                                                                  ------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1j2q B   10 RAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 233M
                                    19        29        39        49        59        69        79        89        99       109       119       129       139    || 150       160       170       180       190       200       210       220|      229    ||233F|||||||
                                                                                                                                                                144|                                                                       220A          233A|||||233J|||
                                                                                                                                                                 146                                                                                      233B|||||233K||
                                                                                                                                                                                                                                                           233C|||||233L|
                                                                                                                                                                                                                                                            233D|||||233M
                                                                                                                                                                                                                                                             233E||||    
                                                                                                                                                                                                                                                              233F|||    
                                                                                                                                                                                                                                                               233G||    
                                                                                                                                                                                                                                                                233H|    
                                                                                                                                                                                                                                                                 233I    


Chain C from PDB  Type:PROTEIN  Length:237
 aligned with PSA_ARCFU | O29760 from UniProtKB/Swiss-Prot  Length:246

    Alignment length:237
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       
           PSA_ARCFU     10 RAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK  246
               SCOP domains d1j2qc_ C: Proteasome alpha subunit (non-catalytic)                                                                                                                                                                                           SCOP domains
               CATH domains 1j2qC00 C:10-233M Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhh...eeeeee..eeeeeee...............eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..........eeeeeeee...eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhh.eeeeeee......ee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------PROTEASOME_ALPHA_2  PDB: C:23-233 UniProt: 23-233                                                                                                                                                                  ------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1j2q C   10 RAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 233M
                                    19        29        39        49        59        69        79        89        99       109       119       129       139    || 150       160       170       180       190       200       210       220|      229    ||233F|||||||
                                                                                                                                                                144|                                                                       220A          233A|||||233J|||
                                                                                                                                                                 146                                                                                      233B|||||233K||
                                                                                                                                                                                                                                                           233C|||||233L|
                                                                                                                                                                                                                                                            233D|||||233M
                                                                                                                                                                                                                                                             233E||||    
                                                                                                                                                                                                                                                              233F|||    
                                                                                                                                                                                                                                                               233G||    
                                                                                                                                                                                                                                                                233H|    
                                                                                                                                                                                                                                                                 233I    


Chain D from PDB  Type:PROTEIN  Length:237
 aligned with PSA_ARCFU | O29760 from UniProtKB/Swiss-Prot  Length:246

    Alignment length:237
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       
           PSA_ARCFU     10 RAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK  246
               SCOP domains d1j2qd_ D: Proteasome alpha subunit (non-catalytic)                                                                                                                                                                                           SCOP domains
               CATH domains 1j2qD00 D:10-233M Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhh...eeeeee..eeeeeee...............eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..........eeeeeeee...eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhh.eeeeeee......ee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------PROTEASOME_ALPHA_2  PDB: D:23-233 UniProt: 23-233                                                                                                                                                                  ------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1j2q D   10 RAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 233M
                                    19        29        39        49        59        69        79        89        99       109       119       129       139    || 150       160       170       180       190       200       210       220|      229    ||233F|||||||
                                                                                                                                                                144|                                                                       220A          233A|||||233J|||
                                                                                                                                                                 146                                                                                      233B|||||233K||
                                                                                                                                                                                                                                                           233C|||||233L|
                                                                                                                                                                                                                                                            233D|||||233M
                                                                                                                                                                                                                                                             233E||||    
                                                                                                                                                                                                                                                              233F|||    
                                                                                                                                                                                                                                                               233G||    
                                                                                                                                                                                                                                                                233H|    
                                                                                                                                                                                                                                                                 233I    


Chain E from PDB  Type:PROTEIN  Length:237
 aligned with PSA_ARCFU | O29760 from UniProtKB/Swiss-Prot  Length:246

    Alignment length:237
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       
           PSA_ARCFU     10 RAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK  246
               SCOP domains d1j2qe_ E: Proteasome alpha subunit (non-catalytic)                                                                                                                                                                                           SCOP domains
               CATH domains 1j2qE00 E:10-233M Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhh...eeeee...eeeeeee...............eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..........eeeeeeee...eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh....hhh.eeeeeee......ee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------PROTEASOME_ALPHA_2  PDB: E:23-233 UniProt: 23-233                                                                                                                                                                  ------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1j2q E   10 RAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 233M
                                    19        29        39        49        59        69        79        89        99       109       119       129       139    || 150       160       170       180       190       200       210       220|      229    ||233F|||||||
                                                                                                                                                                144|                                                                       220A          233A|||||233J|||
                                                                                                                                                                 146                                                                                      233B|||||233K||
                                                                                                                                                                                                                                                           233C|||||233L|
                                                                                                                                                                                                                                                            233D|||||233M
                                                                                                                                                                                                                                                             233E||||    
                                                                                                                                                                                                                                                              233F|||    
                                                                                                                                                                                                                                                               233G||    
                                                                                                                                                                                                                                                                233H|    
                                                                                                                                                                                                                                                                 233I    


Chain F from PDB  Type:PROTEIN  Length:237
 aligned with PSA_ARCFU | O29760 from UniProtKB/Swiss-Prot  Length:246

    Alignment length:237
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       
           PSA_ARCFU     10 RAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK  246
               SCOP domains d1j2qf_ F: Proteasome alpha subunit (non-catalytic)                                                                                                                                                                                           SCOP domains
               CATH domains 1j2qF00 F:10-233M Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhh...eeeee...eeeeeee...............eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..........eeeeeeee...eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh....hhh.eeeeeee......ee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------PROTEASOME_ALPHA_2  PDB: F:23-233 UniProt: 23-233                                                                                                                                                                  ------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1j2q F   10 RAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 233M
                                    19        29        39        49        59        69        79        89        99       109       119       129       139    || 150       160       170       180       190       200       210       220|      229    ||233F|||||||
                                                                                                                                                                144|                                                                       220A          233A|||||233J|||
                                                                                                                                                                 146                                                                                      233B|||||233K||
                                                                                                                                                                                                                                                           233C|||||233L|
                                                                                                                                                                                                                                                            233D|||||233M
                                                                                                                                                                                                                                                             233E||||    
                                                                                                                                                                                                                                                              233F|||    
                                                                                                                                                                                                                                                               233G||    
                                                                                                                                                                                                                                                                233H|    
                                                                                                                                                                                                                                                                 233I    


Chain G from PDB  Type:PROTEIN  Length:237
 aligned with PSA_ARCFU | O29760 from UniProtKB/Swiss-Prot  Length:246

    Alignment length:237
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       
           PSA_ARCFU     10 RAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK  246
               SCOP domains d1j2qg_ G: Proteasome alpha subunit (non-catalytic)                                                                                                                                                                                           SCOP domains
               CATH domains 1j2qG00 G:10-233M Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhh...eeeee...eeeeeee...............eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..........eeeeeeee...eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh....hhh.eeeeeee......ee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------PROTEASOME_ALPHA_2  PDB: G:23-233 UniProt: 23-233                                                                                                                                                                  ------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1j2q G   10 RAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 233M
                                    19        29        39        49        59        69        79        89        99       109       119       129       139    || 150       160       170       180       190       200       210       220|      229    ||233F|||||||
                                                                                                                                                                144|                                                                       220A          233A|||||233J|||
                                                                                                                                                                 146                                                                                      233B|||||233K||
                                                                                                                                                                                                                                                           233C|||||233L|
                                                                                                                                                                                                                                                            233D|||||233M
                                                                                                                                                                                                                                                             233E||||    
                                                                                                                                                                                                                                                              233F|||    
                                                                                                                                                                                                                                                               233G||    
                                                                                                                                                                                                                                                                233H|    
                                                                                                                                                                                                                                                                 233I    


Chain H from PDB  Type:PROTEIN  Length:202
 aligned with PSB_ARCFU | Q9P996 from UniProtKB/Swiss-Prot  Length:213

    Alignment length:202
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  
           PSB_ARCFU     12 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAKFRK  213
               SCOP domains d1j2qh_ H: Proteasome beta subunit (catalytic)                                                                                                                                                             SCOP domains
               CATH domains 1j2qH00 H:1-198 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeeee..eee..eeee.....eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......eeeeeeeee..eeeeeee...........eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh........eeeeee....eeehhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---PROTEASOME_BETA_1  PDB: H:4-51 UniProt: 15-62   ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1j2q H    1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAKFRK  198
                                    10        20        30        40        50        60        70        80        90       100      |109       119  ||   128       138       148       158       168       178       188||     196  
                                                                                                                                   106A            121A| 125|                                                          188A|          
                                                                                                                                                    121B  127                                                           188B          


Chain I from PDB  Type:PROTEIN  Length:202
 aligned with PSB_ARCFU | Q9P996 from UniProtKB/Swiss-Prot  Length:213

    Alignment length:202
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  
           PSB_ARCFU     12 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAKFRK  213
               SCOP domains d1j2qi_ I: Proteasome beta subunit (catalytic)                                                                                                                                                             SCOP domains
               CATH domains 1j2qI00 I:1-198 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeeee..eee..eeee.....eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......eeeeeeeee..eeeeeee...........eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh......eeeeee....eeehhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---PROTEASOME_BETA_1  PDB: I:4-51 UniProt: 15-62   ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1j2q I    1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAKFRK  198
                                    10        20        30        40        50        60        70        80        90       100      |109       119  ||   128       138       148       158       168       178       188||     196  
                                                                                                                                   106A            121A| 125|                                                          188A|          
                                                                                                                                                    121B  127                                                           188B          


Chain J from PDB  Type:PROTEIN  Length:202
 aligned with PSB_ARCFU | Q9P996 from UniProtKB/Swiss-Prot  Length:213

    Alignment length:202
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  
           PSB_ARCFU     12 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAKFRK  213
               SCOP domains d1j2qj_ J: Proteasome beta subunit (catalytic)                                                                                                                                                             SCOP domains
               CATH domains 1j2qJ00 J:1-198 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeeee..eee..eeee.....eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......eeeeeeeee..eeeeeee...........eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh........eeeeee....eeehhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---PROTEASOME_BETA_1  PDB: J:4-51 UniProt: 15-62   ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1j2q J    1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAKFRK  198
                                    10        20        30        40        50        60        70        80        90       100      |109       119  ||   128       138       148       158       168       178       188||     196  
                                                                                                                                   106A            121A| 125|                                                          188A|          
                                                                                                                                                    121B  127                                                           188B          


Chain K from PDB  Type:PROTEIN  Length:202
 aligned with PSB_ARCFU | Q9P996 from UniProtKB/Swiss-Prot  Length:213

    Alignment length:202
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  
           PSB_ARCFU     12 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAKFRK  213
               SCOP domains d1j2qk_ K: Proteasome beta subunit (catalytic)                                                                                                                                                             SCOP domains
               CATH domains 1j2qK00 K:1-198 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeeee..eee..eeee.....eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......eeeeeeeee..eeeeeee...........eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh......eeeeee....eeehhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---PROTEASOME_BETA_1  PDB: K:4-51 UniProt: 15-62   ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1j2q K    1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAKFRK  198
                                    10        20        30        40        50        60        70        80        90       100      |109       119  ||   128       138       148       158       168       178       188||     196  
                                                                                                                                   106A            121A| 125|                                                          188A|          
                                                                                                                                                    121B  127                                                           188B          


Chain L from PDB  Type:PROTEIN  Length:202
 aligned with PSB_ARCFU | Q9P996 from UniProtKB/Swiss-Prot  Length:213

    Alignment length:202
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  
           PSB_ARCFU     12 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAKFRK  213
               SCOP domains d1j2ql_ L: Proteasome beta subunit (catalytic)                                                                                                                                                             SCOP domains
               CATH domains 1j2qL00 L:1-198 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeeee..eee..eeee.....eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......eeeeeeeee..eeeeeee...........eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh........eeeeee....eeehhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---PROTEASOME_BETA_1  PDB: L:4-51 UniProt: 15-62   ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1j2q L    1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAKFRK  198
                                    10        20        30        40        50        60        70        80        90       100      |109       119  ||   128       138       148       158       168       178       188||     196  
                                                                                                                                   106A            121A| 125|                                                          188A|          
                                                                                                                                                    121B  127                                                           188B          


Chain M from PDB  Type:PROTEIN  Length:202
 aligned with PSB_ARCFU | Q9P996 from UniProtKB/Swiss-Prot  Length:213

    Alignment length:202
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  
           PSB_ARCFU     12 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAKFRK  213
               SCOP domains d1j2qm_ M: Proteasome beta subunit (catalytic)                                                                                                                                                             SCOP domains
               CATH domains 1j2qM00 M:1-198 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeeee..eee..eeee.....eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......eeeeeeeee..eeeeeee...........eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh........eeeeee....eeehhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---PROTEASOME_BETA_1  PDB: M:4-51 UniProt: 15-62   ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1j2q M    1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAKFRK  198
                                    10        20        30        40        50        60        70        80        90       100      |109       119  ||   128       138       148       158       168       178       188||     196  
                                                                                                                                   106A            121A| 125|                                                          188A|          
                                                                                                                                                    121B  127                                                           188B          


Chain N from PDB  Type:PROTEIN  Length:202
 aligned with PSB_ARCFU | Q9P996 from UniProtKB/Swiss-Prot  Length:213

    Alignment length:202
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  
           PSB_ARCFU     12 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAKFRK  213
               SCOP domains d1j2qn_ N: Proteasome beta subunit (catalytic)                                                                                                                                                             SCOP domains
               CATH domains 1j2qN00 N:1-198 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeeee..eee..eeee.....eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......eeeeeeeee..eeeeeee...........eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh........eeeeee....eeehhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---PROTEASOME_BETA_1  PDB: N:4-51 UniProt: 15-62   ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1j2q N    1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAKFRK  198
                                    10        20        30        40        50        60        70        80        90       100      |109       119  ||   128       138       148       158       168       178       188||     196  
                                                                                                                                   106A            121A| 125|                                                          188A|          
                                                                                                                                                    121B  127                                                           188B
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 14)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 14)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1J2Q)

(-) Gene Ontology  (13, 23)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G   (PSA_ARCFU | O29760)
molecular function
    GO:0004175    endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0004298    threonine-type endopeptidase activity    Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
biological process
    GO:0010498    proteasomal protein catabolic process    The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0051603    proteolysis involved in cellular protein catabolic process    The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
    GO:0006511    ubiquitin-dependent protein catabolic process    The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0000502    proteasome complex    A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.
    GO:0005839    proteasome core complex    A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
    GO:0019773    proteasome core complex, alpha-subunit complex    The proteasome core subcomplex that constitutes the two outer rings of the proteasome core complex. An example of this component is found in Mus musculus.

Chain H,I,J,K,L,M,N   (PSB_ARCFU | Q9P996)
molecular function
    GO:0004175    endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0004298    threonine-type endopeptidase activity    Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
biological process
    GO:0010498    proteasomal protein catabolic process    The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0051603    proteolysis involved in cellular protein catabolic process    The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0000502    proteasome complex    A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.
    GO:0005839    proteasome core complex    A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
    GO:0019774    proteasome core complex, beta-subunit complex    The proteasome core subcomplex that constitutes the two inner rings of the proteasome core complex. An example of this component is found in Mus musculus.

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  1j2q
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  PSA_ARCFU | O29760
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  PSB_ARCFU | Q9P996
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PSA_ARCFU | O29760: 1j2p

(-) Related Entries Specified in the PDB File

1j2p ALPHA-RING OF THE 20S CP FROM ARCHAEOGLOBUS FULGIDUS