Chain A from PDB Type:PROTEIN Length:243
aligned with PSA_ARCFU | O29760 from UniProtKB/Swiss-Prot Length:246
Alignment length:243
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223 233 243
PSA_ARCFU 4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 246
SCOP domains d1j2pa_ A: Proteasome alpha subunit (non-catalytic) SCOP domains
CATH domains 1j2pA00 A:4-233M Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .................hhhhhhhhhhhhh...eeeeee..eeeeeee........hhhhh..eee....eeeeeeehhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..........eeeeeeee...eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhh.eeeeeee......ee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) ----PROTEASOME_ALPHA_1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
PROSITE (2) -------------------PROTEASOME_ALPHA_2 PDB: A:23-233 UniProt: 23-233 ------------- PROSITE (2)
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1j2p A 4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 233M
13 23 33 43 53 63 73 83 93 103 113 123 133 143|| 154 164 174 184 194 204 214 |223 233||||||233J|||
144| 220A 233A|||||233J|||
146 233B|||||233K||
233C|||||233L|
233D|||||233M
233E||||
233F|||
233G||
233H|
233I
Chain B from PDB Type:PROTEIN Length:243
aligned with PSA_ARCFU | O29760 from UniProtKB/Swiss-Prot Length:246
Alignment length:243
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223 233 243
PSA_ARCFU 4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 246
SCOP domains d1j2pb_ B: Proteasome alpha subunit (non-catalytic) SCOP domains
CATH domains 1j2pB00 B:4-233M Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .................hhhhhhhhhhhhh...eeeeee..eeeeeee........hhhhh..eee....eeeeeeehhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..........eeeeeeee...eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhh.eeeeeee......ee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) ----PROTEASOME_ALPHA_1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
PROSITE (2) -------------------PROTEASOME_ALPHA_2 PDB: B:23-233 UniProt: 23-233 ------------- PROSITE (2)
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1j2p B 4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 233M
13 23 33 43 53 63 73 83 93 103 113 123 133 143|| 154 164 174 184 194 204 214 |223 233||||||233J|||
144| 220A 233A|||||233J|||
146 233B|||||233K||
233C|||||233L|
233D|||||233M
233E||||
233F|||
233G||
233H|
233I
Chain C from PDB Type:PROTEIN Length:243
aligned with PSA_ARCFU | O29760 from UniProtKB/Swiss-Prot Length:246
Alignment length:243
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223 233 243
PSA_ARCFU 4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 246
SCOP domains d1j2pc_ C: Proteasome alpha subunit (non-catalytic) SCOP domains
CATH domains 1j2pC00 C:4-233M Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .................hhhhhhhhhhhhh...eeeeee..eeeeeee........hhhhh..eee....eeeeeeehhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..........eeeeeeee...eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhh.eeeeeee......ee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) ----PROTEASOME_ALPHA_1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
PROSITE (2) -------------------PROTEASOME_ALPHA_2 PDB: C:23-233 UniProt: 23-233 ------------- PROSITE (2)
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1j2p C 4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 233M
13 23 33 43 53 63 73 83 93 103 113 123 133 143|| 154 164 174 184 194 204 214 |223 233||||||233J|||
144| 220A 233A|||||233J|||
146 233B|||||233K||
233C|||||233L|
233D|||||233M
233E||||
233F|||
233G||
233H|
233I
Chain D from PDB Type:PROTEIN Length:243
aligned with PSA_ARCFU | O29760 from UniProtKB/Swiss-Prot Length:246
Alignment length:243
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223 233 243
PSA_ARCFU 4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 246
SCOP domains d1j2pd_ D: Proteasome alpha subunit (non-catalytic) SCOP domains
CATH domains 1j2pD00 D:4-233M Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .................hhhhhhhhhhhhh...eeeeee..eeeeeee........hhhhh..eee....eeeeeeehhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..........eeeeeeee...eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhh.eeeeeee......ee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) ----PROTEASOME_ALPHA_1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
PROSITE (2) -------------------PROTEASOME_ALPHA_2 PDB: D:23-233 UniProt: 23-233 ------------- PROSITE (2)
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1j2p D 4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 233M
13 23 33 43 53 63 73 83 93 103 113 123 133 143|| 154 164 174 184 194 204 214 |223 233||||||233J|||
144| 220A 233A|||||233J|||
146 233B|||||233K||
233C|||||233L|
233D|||||233M
233E||||
233F|||
233G||
233H|
233I
Chain E from PDB Type:PROTEIN Length:243
aligned with PSA_ARCFU | O29760 from UniProtKB/Swiss-Prot Length:246
Alignment length:243
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223 233 243
PSA_ARCFU 4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 246
SCOP domains d1j2pe_ E: Proteasome alpha subunit (non-catalytic) SCOP domains
CATH domains 1j2pE00 E:4-233M Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .................hhhhhhhhhhhhh...eeeeee..eeeeeee........hhhhh..eee....eeeeeeehhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..........eeeeeeee...eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhh.eeeeeee......ee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) ----PROTEASOME_ALPHA_1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
PROSITE (2) -------------------PROTEASOME_ALPHA_2 PDB: E:23-233 UniProt: 23-233 ------------- PROSITE (2)
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1j2p E 4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 233M
13 23 33 43 53 63 73 83 93 103 113 123 133 143|| 154 164 174 184 194 204 214 |223 233||||||233J|||
144| 220A 233A|||||233J|||
146 233B|||||233K||
233C|||||233L|
233D|||||233M
233E||||
233F|||
233G||
233H|
233I
Chain F from PDB Type:PROTEIN Length:243
aligned with PSA_ARCFU | O29760 from UniProtKB/Swiss-Prot Length:246
Alignment length:243
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223 233 243
PSA_ARCFU 4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 246
SCOP domains d1j2pf_ F: Proteasome alpha subunit (non-catalytic) SCOP domains
CATH domains 1j2pF00 F:4-233M Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .................hhhhhhhhhhhhh...eeeeee..eeeeeee........hhhhh..eee....eeeeeeehhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..........eeeeeeee...eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhh.eeeeeee......ee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) ----PROTEASOME_ALPHA_1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
PROSITE (2) -------------------PROTEASOME_ALPHA_2 PDB: F:23-233 UniProt: 23-233 ------------- PROSITE (2)
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1j2p F 4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 233M
13 23 33 43 53 63 73 83 93 103 113 123 133 143|| 154 164 174 184 194 204 214 |223 233||||||233J|||
144| 220A 233A|||||233J|||
146 233B|||||233K||
233C|||||233L|
233D|||||233M
233E||||
233F|||
233G||
233H|
233I
Chain G from PDB Type:PROTEIN Length:243
aligned with PSA_ARCFU | O29760 from UniProtKB/Swiss-Prot Length:246
Alignment length:243
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223 233 243
PSA_ARCFU 4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 246
SCOP domains d1j2pg_ G: Proteasome alpha subunit (non-catalytic) SCOP domains
CATH domains 1j2pG00 G:4-233M Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .................hhhhhhhhhhhhh...eeeeee..eeeeeee........hhhhh..eee....eeeeeeehhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..........eeeeeeee...eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhh.eeeeeee......ee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) ----PROTEASOME_ALPHA_1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
PROSITE (2) -------------------PROTEASOME_ALPHA_2 PDB: G:23-233 UniProt: 23-233 ------------- PROSITE (2)
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1j2p G 4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 233M
13 23 33 43 53 63 73 83 93 103 113 123 133 143|| 154 164 174 184 194 204 214 |223 233||||||233J|||
144| 220A 233A|||||233J|||
146 233B|||||233K||
233C|||||233L|
233D|||||233M
233E||||
233F|||
233G||
233H|
233I
Legend: |
|
→ Mismatch |
(orange background) |
|
- |
→ Gap |
(green background, '-', border residues have a numbering label) |
|
|
→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
|
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
|
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |