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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  ALPHA-RING FROM THE PROTEASOME FROM ARCHAEOGLOBUS FULGIDUS
 
Authors :  M. Groll, H. Brandstetter, H. Bartunik, G. Bourenkow, R. Huber
Date :  08 Jan 03  (Deposition) - 18 Mar 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G
Keywords :  Proteasome, Alpha-Ring, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Groll, H. Brandstetter, H. Bartunik, G. Bourenkow, R. Huber
Investigations On The Maturation And Regulation Of Archaebacterial Proteasomes
J. Mol. Biol. V. 327 75 2003
PubMed-ID: 12614609  |  Reference-DOI: 10.1016/S0022-2836(03)00080-9
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEASOME ALPHA SUBUNIT
    Chains: A, B, C, D, E, F, G
    EC Number: 3.4.25.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 2234
    Synonym: ALPHA-RING

 Structural Features

(-) Chains, Units

  1234567
Asymmetric/Biological Unit : ABCDEFG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1J2P)

(-) Sites  (0, 0)

(no "Site" information available for 1J2P)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1J2P)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1J2P)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1J2P)

(-) PROSITE Motifs  (2, 14)

Asymmetric/Biological Unit (2, 14)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEASOME_ALPHA_1PS00388 Proteasome alpha-type subunits signature.PSA_ARCFU8-30
 
 
 
 
 
 		  7A:8-30
B:8-30
C:8-30
D:8-30
E:8-30
F:8-30
G:8-30
2PROTEASOME_ALPHA_2PS51475 Proteasome alpha-type subunit profile.PSA_ARCFU23-233
 
 
 
 
 
 		  7A:23-233
B:23-233
C:23-233
D:23-233
E:23-233
F:23-233
G:23-233

(-) Exons   (0, 0)

(no "Exon" information available for 1J2P)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:243
 aligned with PSA_ARCFU | O29760 from UniProtKB/Swiss-Prot  Length:246

    Alignment length:243
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243   
           PSA_ARCFU      4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK  246
               SCOP domains d1j2pa_ A: Proteasome alpha subunit (non-catalytic)                                                                                                                                                                                                 SCOP domains
               CATH domains 1j2pA00 A:4-233M Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................hhhhhhhhhhhhh...eeeeee..eeeeeee........hhhhh..eee....eeeeeeehhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..........eeeeeeee...eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhh.eeeeeee......ee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PROTEASOME_ALPHA_1     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) -------------------PROTEASOME_ALPHA_2  PDB: A:23-233 UniProt: 23-233                                                                                                                                                                  ------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1j2p A    4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 233M
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143||     154       164       174       184       194       204       214      |223       233||||||233J|||
                                                                                                                                                                      144|                                                                       220A          233A|||||233J|||
                                                                                                                                                                       146                                                                                      233B|||||233K||
                                                                                                                                                                                                                                                                 233C|||||233L|
                                                                                                                                                                                                                                                                  233D|||||233M
                                                                                                                                                                                                                                                                   233E||||    
                                                                                                                                                                                                                                                                    233F|||    
                                                                                                                                                                                                                                                                     233G||    
                                                                                                                                                                                                                                                                      233H|    
                                                                                                                                                                                                                                                                       233I    


Chain B from PDB  Type:PROTEIN  Length:243
 aligned with PSA_ARCFU | O29760 from UniProtKB/Swiss-Prot  Length:246

    Alignment length:243
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243   
           PSA_ARCFU      4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK  246
               SCOP domains d1j2pb_ B: Proteasome alpha subunit (non-catalytic)                                                                                                                                                                                                 SCOP domains
               CATH domains 1j2pB00 B:4-233M Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................hhhhhhhhhhhhh...eeeeee..eeeeeee........hhhhh..eee....eeeeeeehhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..........eeeeeeee...eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhh.eeeeeee......ee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PROTEASOME_ALPHA_1     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) -------------------PROTEASOME_ALPHA_2  PDB: B:23-233 UniProt: 23-233                                                                                                                                                                  ------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1j2p B    4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 233M
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143||     154       164       174       184       194       204       214      |223       233||||||233J|||
                                                                                                                                                                      144|                                                                       220A          233A|||||233J|||
                                                                                                                                                                       146                                                                                      233B|||||233K||
                                                                                                                                                                                                                                                                 233C|||||233L|
                                                                                                                                                                                                                                                                  233D|||||233M
                                                                                                                                                                                                                                                                   233E||||    
                                                                                                                                                                                                                                                                    233F|||    
                                                                                                                                                                                                                                                                     233G||    
                                                                                                                                                                                                                                                                      233H|    
                                                                                                                                                                                                                                                                       233I    


Chain C from PDB  Type:PROTEIN  Length:243
 aligned with PSA_ARCFU | O29760 from UniProtKB/Swiss-Prot  Length:246

    Alignment length:243
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243   
           PSA_ARCFU      4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK  246
               SCOP domains d1j2pc_ C: Proteasome alpha subunit (non-catalytic)                                                                                                                                                                                                 SCOP domains
               CATH domains 1j2pC00 C:4-233M Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................hhhhhhhhhhhhh...eeeeee..eeeeeee........hhhhh..eee....eeeeeeehhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..........eeeeeeee...eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhh.eeeeeee......ee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PROTEASOME_ALPHA_1     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) -------------------PROTEASOME_ALPHA_2  PDB: C:23-233 UniProt: 23-233                                                                                                                                                                  ------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1j2p C    4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 233M
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143||     154       164       174       184       194       204       214      |223       233||||||233J|||
                                                                                                                                                                      144|                                                                       220A          233A|||||233J|||
                                                                                                                                                                       146                                                                                      233B|||||233K||
                                                                                                                                                                                                                                                                 233C|||||233L|
                                                                                                                                                                                                                                                                  233D|||||233M
                                                                                                                                                                                                                                                                   233E||||    
                                                                                                                                                                                                                                                                    233F|||    
                                                                                                                                                                                                                                                                     233G||    
                                                                                                                                                                                                                                                                      233H|    
                                                                                                                                                                                                                                                                       233I    


Chain D from PDB  Type:PROTEIN  Length:243
 aligned with PSA_ARCFU | O29760 from UniProtKB/Swiss-Prot  Length:246

    Alignment length:243
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243   
           PSA_ARCFU      4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK  246
               SCOP domains d1j2pd_ D: Proteasome alpha subunit (non-catalytic)                                                                                                                                                                                                 SCOP domains
               CATH domains 1j2pD00 D:4-233M Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................hhhhhhhhhhhhh...eeeeee..eeeeeee........hhhhh..eee....eeeeeeehhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..........eeeeeeee...eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhh.eeeeeee......ee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PROTEASOME_ALPHA_1     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) -------------------PROTEASOME_ALPHA_2  PDB: D:23-233 UniProt: 23-233                                                                                                                                                                  ------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1j2p D    4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 233M
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143||     154       164       174       184       194       204       214      |223       233||||||233J|||
                                                                                                                                                                      144|                                                                       220A          233A|||||233J|||
                                                                                                                                                                       146                                                                                      233B|||||233K||
                                                                                                                                                                                                                                                                 233C|||||233L|
                                                                                                                                                                                                                                                                  233D|||||233M
                                                                                                                                                                                                                                                                   233E||||    
                                                                                                                                                                                                                                                                    233F|||    
                                                                                                                                                                                                                                                                     233G||    
                                                                                                                                                                                                                                                                      233H|    
                                                                                                                                                                                                                                                                       233I    


Chain E from PDB  Type:PROTEIN  Length:243
 aligned with PSA_ARCFU | O29760 from UniProtKB/Swiss-Prot  Length:246

    Alignment length:243
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243   
           PSA_ARCFU      4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK  246
               SCOP domains d1j2pe_ E: Proteasome alpha subunit (non-catalytic)                                                                                                                                                                                                 SCOP domains
               CATH domains 1j2pE00 E:4-233M Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................hhhhhhhhhhhhh...eeeeee..eeeeeee........hhhhh..eee....eeeeeeehhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..........eeeeeeee...eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhh.eeeeeee......ee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PROTEASOME_ALPHA_1     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) -------------------PROTEASOME_ALPHA_2  PDB: E:23-233 UniProt: 23-233                                                                                                                                                                  ------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1j2p E    4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 233M
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143||     154       164       174       184       194       204       214      |223       233||||||233J|||
                                                                                                                                                                      144|                                                                       220A          233A|||||233J|||
                                                                                                                                                                       146                                                                                      233B|||||233K||
                                                                                                                                                                                                                                                                 233C|||||233L|
                                                                                                                                                                                                                                                                  233D|||||233M
                                                                                                                                                                                                                                                                   233E||||    
                                                                                                                                                                                                                                                                    233F|||    
                                                                                                                                                                                                                                                                     233G||    
                                                                                                                                                                                                                                                                      233H|    
                                                                                                                                                                                                                                                                       233I    


Chain F from PDB  Type:PROTEIN  Length:243
 aligned with PSA_ARCFU | O29760 from UniProtKB/Swiss-Prot  Length:246

    Alignment length:243
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243   
           PSA_ARCFU      4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK  246
               SCOP domains d1j2pf_ F: Proteasome alpha subunit (non-catalytic)                                                                                                                                                                                                 SCOP domains
               CATH domains 1j2pF00 F:4-233M Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................hhhhhhhhhhhhh...eeeeee..eeeeeee........hhhhh..eee....eeeeeeehhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..........eeeeeeee...eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhh.eeeeeee......ee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PROTEASOME_ALPHA_1     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) -------------------PROTEASOME_ALPHA_2  PDB: F:23-233 UniProt: 23-233                                                                                                                                                                  ------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1j2p F    4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 233M
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143||     154       164       174       184       194       204       214      |223       233||||||233J|||
                                                                                                                                                                      144|                                                                       220A          233A|||||233J|||
                                                                                                                                                                       146                                                                                      233B|||||233K||
                                                                                                                                                                                                                                                                 233C|||||233L|
                                                                                                                                                                                                                                                                  233D|||||233M
                                                                                                                                                                                                                                                                   233E||||    
                                                                                                                                                                                                                                                                    233F|||    
                                                                                                                                                                                                                                                                     233G||    
                                                                                                                                                                                                                                                                      233H|    
                                                                                                                                                                                                                                                                       233I    


Chain G from PDB  Type:PROTEIN  Length:243
 aligned with PSA_ARCFU | O29760 from UniProtKB/Swiss-Prot  Length:246

    Alignment length:243
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243   
           PSA_ARCFU      4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK  246
               SCOP domains d1j2pg_ G: Proteasome alpha subunit (non-catalytic)                                                                                                                                                                                                 SCOP domains
               CATH domains 1j2pG00 G:4-233M Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................hhhhhhhhhhhhh...eeeeee..eeeeeee........hhhhh..eee....eeeeeeehhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..........eeeeeeee...eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhh.eeeeeee......ee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PROTEASOME_ALPHA_1     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) -------------------PROTEASOME_ALPHA_2  PDB: G:23-233 UniProt: 23-233                                                                                                                                                                  ------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1j2p G    4 PQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 233M
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143||     154       164       174       184       194       204       214      |223       233||||||233J|||
                                                                                                                                                                      144|                                                                       220A          233A|||||233J|||
                                                                                                                                                                       146                                                                                      233B|||||233K||
                                                                                                                                                                                                                                                                 233C|||||233L|
                                                                                                                                                                                                                                                                  233D|||||233M
                                                                                                                                                                                                                                                                   233E||||    
                                                                                                                                                                                                                                                                    233F|||    
                                                                                                                                                                                                                                                                     233G||    
                                                                                                                                                                                                                                                                      233H|    
                                                                                                                                                                                                                                                                       233I
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 7)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 7)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1J2P)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G   (PSA_ARCFU | O29760)
molecular function
    GO:0004175    endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0004298    threonine-type endopeptidase activity    Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
biological process
    GO:0010498    proteasomal protein catabolic process    The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0051603    proteolysis involved in cellular protein catabolic process    The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
    GO:0006511    ubiquitin-dependent protein catabolic process    The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0000502    proteasome complex    A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.
    GO:0005839    proteasome core complex    A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
    GO:0019773    proteasome core complex, alpha-subunit complex    The proteasome core subcomplex that constitutes the two outer rings of the proteasome core complex. An example of this component is found in Mus musculus.

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 Related Entries

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        PSA_ARCFU | O29760: 1j2q

(-) Related Entries Specified in the PDB File

1j2q THE SAME PROTEIN COMPLEXED WITH CALPAIN-INHIBITOR I