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(-) Description

Title :  ELONGATION FACTOR TU IN COMPLEX WITH AURODOX
 
Authors :  L. Vogeley, G. J. Palm, J. R. Mesters, R. Hilgenfeld
Date :  26 Mar 01  (Deposition) - 15 May 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Translation, Gtpase, Aurodox, N-Methyl-Kirromycin, Antibiotic, Ribosome (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Vogeley, G. J. Palm, J. R. Mesters, R. Hilgenfeld
Conformational Change Of Elongation Factor Tu Induced By Antibiotic Binding: Crystal Structure Of The Complex Between Ef-Tu:Gdp And Aurodox
J. Biol. Chem. V. 276 17149 2001
PubMed-ID: 11278992  |  Reference-DOI: 10.1074/JBC.M100017200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ELONGATION FACTOR TU
    Atcc: 27634
    Chains: A, B
    EC Number: 3.1.5.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Atcc Number: 47092
    Expression System Plasmid: PEFTU10
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: TUFB
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Other Details: TERNARY COMPLEX WITH GUANOSINE DIPHOSPHATE AND AURODOX
    Strain: HB8
    Synonym: EF-TU

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric Unit (4, 8)
No.NameCountTypeFull Name
1BME2Ligand/IonBETA-MERCAPTOETHANOL
2GDP2Ligand/IonGUANOSINE-5'-DIPHOSPHATE
3MAU2Ligand/IonN-METHYL KIRROMYCIN
4MG2Ligand/IonMAGNESIUM ION
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
1BME1Ligand/IonBETA-MERCAPTOETHANOL
2GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
3MAU1Ligand/IonN-METHYL KIRROMYCIN
4MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
1BME1Ligand/IonBETA-MERCAPTOETHANOL
2GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
3MAU1Ligand/IonN-METHYL KIRROMYCIN
4MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:25 , GDP A:406 , HOH A:2018 , HOH A:2043 , HOH A:2258 , HOH A:2260BINDING SITE FOR RESIDUE MG A 407
2AC2SOFTWARETHR B:25 , GDP B:406 , HOH B:2019 , HOH B:2051 , HOH B:2311 , HOH B:2319BINDING SITE FOR RESIDUE MG B 407
3AC3SOFTWAREASP A:21 , HIS A:22 , GLY A:23 , LYS A:24 , THR A:25 , THR A:26 , TYR A:47 , ASN A:136 , LYS A:137 , ASP A:139 , MET A:140 , SER A:174 , ALA A:175 , LEU A:176 , MG A:407 , HOH A:2083 , HOH A:2258 , HOH A:2259 , HOH A:2260 , HOH A:2261 , HOH A:2262 , HOH A:2263BINDING SITE FOR RESIDUE GDP A 406
4AC4SOFTWAREILE A:93 , ARG A:117 , LEU A:121 , ARG A:124 , GLN A:125 , VAL A:126 , TYR A:161 , GLU A:162 , TYR A:321 , GLU A:326 , GLU A:327 , ARG A:345 , ARG A:385 , PHE A:386 , ALA A:387 , ALA A:397 , HOH A:2077 , HOH A:2199 , HOH A:2252 , HOH A:2264 , HOH A:2265 , HOH A:2266 , HOH A:2267 , HOH A:2268 , HOH A:2269 , ARG B:330 , HIS B:331BINDING SITE FOR RESIDUE MAU A 408
5AC5SOFTWAREVAL A:80 , CYS A:82 , PRO A:83 , ASN A:91 , MET A:92 , HOH A:2271BINDING SITE FOR RESIDUE BME A 482
6AC6SOFTWAREASP B:21 , HIS B:22 , GLY B:23 , LYS B:24 , THR B:25 , THR B:26 , ASN B:136 , LYS B:137 , ASP B:139 , MET B:140 , SER B:174 , ALA B:175 , LEU B:176 , MG B:407 , HOH B:2108 , HOH B:2311 , HOH B:2312 , HOH B:2313 , HOH B:2314 , HOH B:2315 , HOH B:2316 , HOH B:2317 , HOH B:2318 , HOH B:2319BINDING SITE FOR RESIDUE GDP B 406
7AC7SOFTWAREARG A:330 , HIS A:331 , HOH A:2201 , ILE B:93 , GLU B:118 , LEU B:121 , ARG B:124 , GLN B:125 , TYR B:161 , GLU B:162 , TYR B:321 , GLU B:326 , GLU B:327 , ARG B:345 , ARG B:385 , PHE B:386 , ALA B:387 , ALA B:397 , HOH B:2097 , HOH B:2298 , HOH B:2307 , HOH B:2320 , HOH B:2321 , HOH B:2322 , HOH B:2323 , HOH B:2324 , HOH B:2325 , HOH B:2326BINDING SITE FOR RESIDUE MAU B 408
8AC8SOFTWAREVAL B:80 , CYS B:82 , PRO B:83 , ASN B:91 , MET B:92 , HOH B:2054 , HOH B:2327BINDING SITE FOR RESIDUE BME B 482

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1HA3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1HA3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1HA3)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1G_TR_1PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature.EFTU1_THET852-67
 		  2A:51-66
B:66-66
EFTU1_THETH52-67
 		  2A:51-66
B:66-66
EFTU2_THET852-67
 		  2A:51-66
B:66-66
Biological Unit 1 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1G_TR_1PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature.EFTU1_THET852-67
 		  1A:51-66
-
EFTU1_THETH52-67
 		  1A:51-66
-
EFTU2_THET852-67
 		  1A:51-66
-
Biological Unit 2 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1G_TR_1PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature.EFTU1_THET852-67
 		  1-
B:66-66
EFTU1_THETH52-67
 		  1-
B:66-66
EFTU2_THET852-67
 		  1-
B:66-66

(-) Exons   (0, 0)

(no "Exon" information available for 1HA3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:391
 aligned with EFTU1_THET8 | Q5SHN6 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:403
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403   
          EFTU1_THET8     4 GEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 406
               SCOP domains d1ha3a3 A:3-212 Elongation factor Tu (EF-Tu), N-te            rminal (G) domain                                                                                                                                   d1ha3a1 A:213-312 Elongation factor Tu (EF-Tu), domain 2                                            d1ha3a2 A:313-405 Elongation factor Tu (EF-Tu)                                                SCOP domains
               CATH domains 1ha3A01 A:3-213 P-loop containing nucleotide triph            osphate hydrolases                                                                                                                                   --1ha3A02 A:216-307 Translation factors                                                       ---1ha3A03 A:311-404 Translation factors                                                         - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.....eeeeeee.....hhhhhhhhhhhhhhh........hhhhhh.------------..eeeee....eeeeee...hhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhh....eeeeeehhhhh.hhhhhhhhhhhhhhhhhhh........eee.hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...........eee..eeeee...eeeeeee....ee....eeeee......eeeeeeeeee..eee..ee...eeeeee............eee.....eeeeeeeeeeee.hhhhh............eeee..eeeeeeee............eeeeeeeeeeeeee....eeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------G_TR_1          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ha3 A   3 GEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDK------------TAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
                                    12        22        32        42        52         -  |     72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402   
                                                                            52           65                                                                                                                                                                                                                                                                                                                                                    


Chain A from PDB  Type:PROTEIN  Length:391
 aligned with EFTU1_THETH | P60338 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:403
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403   
          EFTU1_THETH     4 GEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 406
               SCOP domains d1ha3a3 A:3-212 Elongation factor Tu (EF-Tu), N-te            rminal (G) domain                                                                                                                                   d1ha3a1 A:213-312 Elongation factor Tu (EF-Tu), domain 2                                            d1ha3a2 A:313-405 Elongation factor Tu (EF-Tu)                                                SCOP domains
               CATH domains 1ha3A01 A:3-213 P-loop containing nucleotide triph            osphate hydrolases                                                                                                                                   --1ha3A02 A:216-307 Translation factors                                                       ---1ha3A03 A:311-404 Translation factors                                                         - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.....eeeeeee.....hhhhhhhhhhhhhhh........hhhhhh.------------..eeeee....eeeeee...hhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhh....eeeeeehhhhh.hhhhhhhhhhhhhhhhhhh........eee.hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...........eee..eeeee...eeeeeee....ee....eeeee......eeeeeeeeee..eee..ee...eeeeee............eee.....eeeeeeeeeeee.hhhhh............eeee..eeeeeeee............eeeeeeeeeeeeee....eeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------G_TR_1          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ha3 A   3 GEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDK------------TAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
                                    12        22        32        42        52         -  |     72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402   
                                                                            52           65                                                                                                                                                                                                                                                                                                                                                    


Chain A from PDB  Type:PROTEIN  Length:391
 aligned with EFTU2_THET8 | P60339 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:403
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403   
          EFTU2_THET8     4 GEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 406
               SCOP domains d1ha3a3 A:3-212 Elongation factor Tu (EF-Tu), N-te            rminal (G) domain                                                                                                                                   d1ha3a1 A:213-312 Elongation factor Tu (EF-Tu), domain 2                                            d1ha3a2 A:313-405 Elongation factor Tu (EF-Tu)                                                SCOP domains
               CATH domains 1ha3A01 A:3-213 P-loop containing nucleotide triph            osphate hydrolases                                                                                                                                   --1ha3A02 A:216-307 Translation factors                                                       ---1ha3A03 A:311-404 Translation factors                                                         - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.....eeeeeee.....hhhhhhhhhhhhhhh........hhhhhh.------------..eeeee....eeeeee...hhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhh....eeeeeehhhhh.hhhhhhhhhhhhhhhhhhh........eee.hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...........eee..eeeee...eeeeeee....ee....eeeee......eeeeeeeeee..eee..ee...eeeeee............eee.....eeeeeeeeeeee.hhhhh............eeee..eeeeeeee............eeeeeeeeeeeeee....eeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------G_TR_1          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ha3 A   3 GEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDK------------TAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
                                    12        22        32        42        52         -  |     72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402   
                                                                            52           65                                                                                                                                                                                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:379
 aligned with EFTU1_THET8 | Q5SHN6 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:403
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403   
          EFTU1_THET8     4 GEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 406
               SCOP domains d1ha3b3 B:3-212 Elongation factor Tu (E                        F-Tu), N-terminal (G) domain                                                                                                                       d1ha3b1 B:213-312 Elongation factor Tu (EF-Tu), domain 2                                            d1ha3b2 B:313-405 Elongation factor Tu (EF-Tu)                                                SCOP domains
               CATH domains 1ha3B01 B:3-213 P-loop containing nucle                        otide triphosphate hydrolases                                                                                                                       --1ha3B02 B:216-307 Translation factors                                                       ---1ha3B03 B:311-404 Translation factors                                                         - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.....eeeeeee.....hhhhhhhhhhhhhhh....------------------------.eeeee....eeeeee...hhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhh....eeeeeehhhhh.hhhhhhhhhhhhhhhhhhh........eee.hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...........eee..eeeee...eeeeeee....ee....eeeee......eeeeeeeeee..eee..ee...eeeeee............eee.....eeeeeeeeeeee.hhhhh............eeee..eeeeeeee............eeeeeeeeeeeeee....eeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------G_TR_1          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ha3 B   3 GEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPN------------------------AHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
                                    12        22        32        |-         -         -   |    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402   
                                                                 41                       66                                                                                                                                                                                                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:379
 aligned with EFTU1_THETH | P60338 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:403
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403   
          EFTU1_THETH     4 GEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 406
               SCOP domains d1ha3b3 B:3-212 Elongation factor Tu (E                        F-Tu), N-terminal (G) domain                                                                                                                       d1ha3b1 B:213-312 Elongation factor Tu (EF-Tu), domain 2                                            d1ha3b2 B:313-405 Elongation factor Tu (EF-Tu)                                                SCOP domains
               CATH domains 1ha3B01 B:3-213 P-loop containing nucle                        otide triphosphate hydrolases                                                                                                                       --1ha3B02 B:216-307 Translation factors                                                       ---1ha3B03 B:311-404 Translation factors                                                         - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.....eeeeeee.....hhhhhhhhhhhhhhh....------------------------.eeeee....eeeeee...hhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhh....eeeeeehhhhh.hhhhhhhhhhhhhhhhhhh........eee.hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...........eee..eeeee...eeeeeee....ee....eeeee......eeeeeeeeee..eee..ee...eeeeee............eee.....eeeeeeeeeeee.hhhhh............eeee..eeeeeeee............eeeeeeeeeeeeee....eeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------G_TR_1          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ha3 B   3 GEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPN------------------------AHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
                                    12        22        32        |-         -         -   |    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402   
                                                                 41                       66                                                                                                                                                                                                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:379
 aligned with EFTU2_THET8 | P60339 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:403
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403   
          EFTU2_THET8     4 GEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 406
               SCOP domains d1ha3b3 B:3-212 Elongation factor Tu (E                        F-Tu), N-terminal (G) domain                                                                                                                       d1ha3b1 B:213-312 Elongation factor Tu (EF-Tu), domain 2                                            d1ha3b2 B:313-405 Elongation factor Tu (EF-Tu)                                                SCOP domains
               CATH domains 1ha3B01 B:3-213 P-loop containing nucle                        otide triphosphate hydrolases                                                                                                                       --1ha3B02 B:216-307 Translation factors                                                       ---1ha3B03 B:311-404 Translation factors                                                         - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.....eeeeeee.....hhhhhhhhhhhhhhh....------------------------.eeeee....eeeeee...hhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhh....eeeeeehhhhh.hhhhhhhhhhhhhhhhhhh........eee.hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...........eee..eeeee...eeeeeee....ee....eeeee......eeeeeeeeee..eee..ee...eeeeee............eee.....eeeeeeeeeeee.hhhhh............eeee..eeeeeeee............eeeeeeeeeeeeee....eeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------G_TR_1          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ha3 B   3 GEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPN------------------------AHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
                                    12        22        32        |-         -         -   |    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402   
                                                                 41                       66
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 6)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 6)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1HA3)

(-) Gene Ontology  (9, 25)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (EFTU1_THETH | P60338)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0003746    translation elongation factor activity    Functions in chain elongation during polypeptide synthesis at the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
    GO:0006414    translational elongation    The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

Chain A,B   (EFTU2_THET8 | P60339)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0003746    translation elongation factor activity    Functions in chain elongation during polypeptide synthesis at the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
    GO:0006414    translational elongation    The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

Chain A,B   (EFTU1_THET8 | Q5SHN6)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0003746    translation elongation factor activity    Functions in chain elongation during polypeptide synthesis at the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
    GO:0006414    translational elongation    The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        EFTU1_THET8 | Q5SHN6: 1zc8 2c78 4v5g 4v5p 4v5q 4v5r 4v5s 4v8q
        EFTU1_THETH | P60338: 1aip 1exm 4h9g 4lbv 4lbw 4lby 4lbz 4lc0
        EFTU2_THET8 | P60339: 2c77 2p8w 2p8x 2p8z 3dwu 4v5l 4v68

(-) Related Entries Specified in the PDB File

1aip EF-TU EF-TS COMPLEX FROM THERMUS THERMOPHILUS
1exm CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS ELONGATION FACTOR TU (EF-TU) IN COMPLEX WITH THE GTP ANALOGUE GPPNHP.