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1HA3
Biol. Unit 1
Info
Asym.Unit (145 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (72 KB)
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(1)
Title
:
ELONGATION FACTOR TU IN COMPLEX WITH AURODOX
Authors
:
L. Vogeley, G. J. Palm, J. R. Mesters, R. Hilgenfeld
Date
:
26 Mar 01 (Deposition) - 15 May 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Translation, Gtpase, Aurodox, N-Methyl-Kirromycin, Antibiotic, Ribosome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Vogeley, G. J. Palm, J. R. Mesters, R. Hilgenfeld
Conformational Change Of Elongation Factor Tu Induced By Antibiotic Binding: Crystal Structure Of The Complex Between Ef-Tu:Gdp And Aurodox
J. Biol. Chem. V. 276 17149 2001
(for further references see the
PDB file header
)
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
1b: BETA-MERCAPTOETHANOL (BMEb)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
3a: N-METHYL KIRROMYCIN (MAUa)
3b: N-METHYL KIRROMYCIN (MAUb)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BME
1
Ligand/Ion
BETA-MERCAPTOETHANOL
2
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
3
MAU
1
Ligand/Ion
N-METHYL KIRROMYCIN
4
MG
-1
Ligand/Ion
MAGNESIUM ION
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:25 , GDP A:406 , HOH A:2018 , HOH A:2043 , HOH A:2258 , HOH A:2260
BINDING SITE FOR RESIDUE MG A 407
2
AC3
SOFTWARE
ASP A:21 , HIS A:22 , GLY A:23 , LYS A:24 , THR A:25 , THR A:26 , TYR A:47 , ASN A:136 , LYS A:137 , ASP A:139 , MET A:140 , SER A:174 , ALA A:175 , LEU A:176 , MG A:407 , HOH A:2083 , HOH A:2258 , HOH A:2259 , HOH A:2260 , HOH A:2261 , HOH A:2262 , HOH A:2263
BINDING SITE FOR RESIDUE GDP A 406
3
AC4
SOFTWARE
ILE A:93 , ARG A:117 , LEU A:121 , ARG A:124 , GLN A:125 , VAL A:126 , TYR A:161 , GLU A:162 , TYR A:321 , GLU A:326 , GLU A:327 , ARG A:345 , ARG A:385 , PHE A:386 , ALA A:387 , ALA A:397 , HOH A:2077 , HOH A:2199 , HOH A:2252 , HOH A:2264 , HOH A:2265 , HOH A:2266 , HOH A:2267 , HOH A:2268 , HOH A:2269 , ARG B:330 , HIS B:331
BINDING SITE FOR RESIDUE MAU A 408
4
AC5
SOFTWARE
VAL A:80 , CYS A:82 , PRO A:83 , ASN A:91 , MET A:92 , HOH A:2271
BINDING SITE FOR RESIDUE BME A 482
5
AC7
SOFTWARE
ARG A:330 , HIS A:331 , HOH A:2201 , ILE B:93 , GLU B:118 , LEU B:121 , ARG B:124 , GLN B:125 , TYR B:161 , GLU B:162 , TYR B:321 , GLU B:326 , GLU B:327 , ARG B:345 , ARG B:385 , PHE B:386 , ALA B:387 , ALA B:397 , HOH B:2097 , HOH B:2298 , HOH B:2307 , HOH B:2320 , HOH B:2321 , HOH B:2322 , HOH B:2323 , HOH B:2324 , HOH B:2325 , HOH B:2326
BINDING SITE FOR RESIDUE MAU B 408
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: G_TR_1 (A:51-66)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_TR_1
PS00301
Translational (tr)-type guanine nucleotide-binding (G) domain signature.
EFTU1_THET8
52-67
1
A:51-66
-
EFTU1_THETH
52-67
1
A:51-66
-
EFTU2_THET8
52-67
1
A:51-66
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1ha3a2 (A:313-405)
1b: SCOP_d1ha3b2 (B:313-405)
2a: SCOP_d1ha3a1 (A:213-312)
2b: SCOP_d1ha3b1 (B:213-312)
3a: SCOP_d1ha3a3 (A:3-212)
3b: SCOP_d1ha3b3 (B:3-212)
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Classes
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)
(
)
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)
(
)
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Elongation factor/aminomethyltransferase common domain
(82)
Superfamily
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(67)
Family
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(48)
Protein domain
:
Elongation factor Tu (EF-Tu)
(17)
Thermus thermophilus [TaxId: 274]
(4)
1a
d1ha3a2
A:313-405
1b
d1ha3b2
B:313-405
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Translation proteins
(218)
Family
:
Elongation factors
(77)
Protein domain
:
Elongation factor Tu (EF-Tu), domain 2
(17)
Thermus thermophilus [TaxId: 274]
(4)
2a
d1ha3a1
A:213-312
2b
d1ha3b1
B:213-312
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Elongation factor Tu (EF-Tu), N-terminal (G) domain
(19)
Thermus thermophilus [TaxId: 274]
(4)
3a
d1ha3a3
A:3-212
3b
d1ha3b3
B:3-212
[
close SCOP info
]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1ha3A01 (A:3-213)
1b: CATH_1ha3B01 (B:3-213)
2a: CATH_1ha3A03 (A:311-404)
2b: CATH_1ha3B03 (B:311-404)
2c: CATH_1ha3A02 (A:216-307)
2d: CATH_1ha3B02 (B:216-307)
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)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Thermus thermophilus. Organism_taxid: 300852. Strain: hb8.
(1)
1a
1ha3A01
A:3-213
1b
1ha3B01
B:3-213
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Translation factors
(223)
Thermus thermophilus. Organism_taxid: 300852. Strain: hb8.
(1)
2a
1ha3A03
A:311-404
2b
1ha3B03
B:311-404
2c
1ha3A02
A:216-307
2d
1ha3B02
B:216-307
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (145 KB)
Header - Asym.Unit
Biol.Unit 1 (72 KB)
Header - Biol.Unit 1
Biol.Unit 2 (72 KB)
Header - Biol.Unit 2
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