1GW9 - JenaLib

Asymmetric Unit (32, 32)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:295 , ALA A:332 , ARG A:334 , ARG A:368 , GLY A:369 , ALA A:371 , HOH A:2270 , HOH A:2275 , HOH A:2342 , HOH A:2343	BINDING SITE FOR RESIDUE LXC A1389
02	AC2	SOFTWARE	PHE A:26 , HIS A:54 , TRP A:137 , GLU A:181 , GLU A:217 , HIS A:220 , ASP A:245 , ASP A:287 , CA A:1387 , HOH A:2245 , HOH A:2265 , HOH A:2344 , HOH A:2345 , HOH A:2346 , HOH A:2347	BINDING SITE FOR RESIDUE LXC A1390
03	AC3	SOFTWARE	GLU A:181 , GLU A:217 , ASP A:245 , ASP A:287 , LXC A:1390	BINDING SITE FOR RESIDUE CA A1387
04	AC4	SOFTWARE	GLU A:217 , HIS A:220 , ASP A:255 , ASP A:257 , HOH A:2243 , HOH A:2245	BINDING SITE FOR RESIDUE CA A1388
05	AC5	SOFTWARE	HIS A:49 , IOD A:1392	BINDING SITE FOR RESIDUE IOD A1391
06	AC6	SOFTWARE	IOD A:1391 , IOD A:1393	BINDING SITE FOR RESIDUE IOD A1392
07	AC7	SOFTWARE	IOD A:1392 , IOD A:1394	BINDING SITE FOR RESIDUE IOD A1393
08	AC8	SOFTWARE	GLU A:132 , IOD A:1393	BINDING SITE FOR RESIDUE IOD A1394
09	AC9	SOFTWARE	ALA A:201 , GLN A:234 , IOD A:1396	BINDING SITE FOR RESIDUE IOD A1395
10	BC1	SOFTWARE	GLU A:204 , ALA A:238 , IOD A:1395 , IOD A:1397	BINDING SITE FOR RESIDUE IOD A1396
11	BC2	SOFTWARE	LEU A:200 , GLU A:204 , LYS A:240 , IOD A:1396 , IOD A:1398	BINDING SITE FOR RESIDUE IOD A1397
12	BC3	SOFTWARE	GLU A:204 , IOD A:1397 , IOD A:1399	BINDING SITE FOR RESIDUE IOD A1398
13	BC4	SOFTWARE	GLU A:204 , PRO A:209 , LYS A:240 , IOD A:1398	BINDING SITE FOR RESIDUE IOD A1399
14	BC5	SOFTWARE	MET A:158 , IOD A:1401 , HOH A:2163	BINDING SITE FOR RESIDUE IOD A1400
15	BC6	SOFTWARE	PHE A:104 , IOD A:1400 , IOD A:1402 , IOD A:1404	BINDING SITE FOR RESIDUE IOD A1401
16	BC7	SOFTWARE	ALA A:136 , TRP A:137 , IOD A:1401 , HOH A:2104 , HOH A:2161 , HOH A:2162	BINDING SITE FOR RESIDUE IOD A1402
17	BC8	SOFTWARE	THR A:119 , LEU A:165 , HOH A:2104	BINDING SITE FOR RESIDUE IOD A1403
18	BC9	SOFTWARE	LEU A:93 , GLY A:103 , PHE A:104 , GLU A:141 , IOD A:1401	BINDING SITE FOR RESIDUE IOD A1404
19	CC1	SOFTWARE	PRO A:25 , IOD A:1406	BINDING SITE FOR RESIDUE IOD A1405
20	CC2	SOFTWARE	PRO A:25 , GLU A:186 , TYR A:254 , IOD A:1405 , HOH A:2205	BINDING SITE FOR RESIDUE IOD A1406
21	CC3	SOFTWARE	GLY A:239 , LYS A:240 , LEU A:241 , HOH A:2229 , HOH A:2233	BINDING SITE FOR RESIDUE IOD A1407
22	CC4	SOFTWARE	IOD A:1409	BINDING SITE FOR RESIDUE IOD A1408
23	CC5	SOFTWARE	IOD A:1408 , HOH A:2340	BINDING SITE FOR RESIDUE IOD A1409
24	CC6	SOFTWARE	GLN A:41 , IOD A:1412 , IOD A:1419	BINDING SITE FOR RESIDUE IOD A1411
25	CC7	SOFTWARE	GLU A:38 , IOD A:1411	BINDING SITE FOR RESIDUE IOD A1412
26	CC8	SOFTWARE	LEU A:193 , GLN A:234 , HOH A:2093	BINDING SITE FOR RESIDUE IOD A1413
27	CC9	SOFTWARE	GLY A:138 , MET A:158 , LEU A:192 , HOH A:2163 , HOH A:2202	BINDING SITE FOR RESIDUE IOD A1414
28	DC1	SOFTWARE	GLY A:263 , ARG A:266 , HOH A:2036 , HOH A:2167	BINDING SITE FOR RESIDUE IOD A1415
29	DC2	SOFTWARE	HIS A:71 , ARG A:74	BINDING SITE FOR RESIDUE IOD A1416
30	DC3	SOFTWARE	ASN A:227 , HOH A:2094	BINDING SITE FOR RESIDUE IOD A1417
31	DC4	SOFTWARE	ALA A:319 , HOH A:2341	BINDING SITE FOR RESIDUE IOD A1418
32	DC5	SOFTWARE	IOD A:1411	BINDING SITE FOR RESIDUE IOD A1419

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:385
 aligned with XYLA_STRRU | P24300 from UniProtKB/Swiss-Prot  Length:388

    Alignment length:385
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381     
           XYLA_STRRU     2 NYQPTPEDRFTFGLWTVGWQGRDPFGDATRRALDPVESVRRLAELGAHGVTFHDDDLIPFGSSDSEREEHVKRFRQALDDTGMKVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAETYVAWGGREGAESGGAKDVRDALDRMKEAFDLLGEYVTSQGYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGIAQALWAGKLFHIDLNGQNGIKYDQDLRFGAGDLRAAFWLVDLLESAGYSGPRHFDFKPPRTEDFDGVWASAAGCMRNYLILKERAAAFRADPEVQEALRASRLDELARPTAADGLQALLDDRSAFEEFDVDAAAARGMAFERLDQLAMDHLLGA 386
               SCOP domains d1gw9a_ A: D-xylose isomerase                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1gw9A00 A:2-386 Divalent-metal-dependent TIM barrel enzymes                                                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhh.eeeehhhhh...............hhhhhhhhhhhhh..eeeeehhhhh....hhhhhhhhhhhhhhhhhhhh....eee.....hhhhh.......hhhhhhhhhhhhhhhhhhhhhh...eeee.....ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee.........ee...hhhhhhhhhh...hhh.eee..hhhhhhh...hhhhhhhhhhhh......ee.................hhhhhhhhhhhhhhh.....eee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhh..hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --XYLOSE_ISOMERASE  PDB: A:4-383 UniProt: 4-383                                                                                                                                                                                                                                                                                                                                               --- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gw9 A   2 NYQPTPEDRFTFGLWTVGWQGRDPFGDATRRALDPVESVQRLAELGAHGVTFHDDDLIPFGSSDSEREEHVKRFRQALDDTGMKVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAETYVAWGGREGAESGGAKDVRDALDRMKEAFDLLGEYVTSQGYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGIAQALWAGKLFHIDLNGQNGIKYDQDLRFGAGDLRAAFWLVDLLESAGYSGPRHFDFKPPRTEDFDGVWASAAGCMRNYLILKERAAAFRADPEVQEALRASRLDELARPTAADGLQALLDDRSAFEEFDVDAAAARGMAFERLDQLAMDHLLGA 386
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

Asymmetric Unit(hide GO term definitions)

Chain A (XYLA_STRRU | P24300)

molecular function
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0009045	xylose isomerase activity	Catalysis of the reaction: D-xylose = D-xylulose.
biological process
	GO:0042732	D-xylose metabolic process	The chemical reactions and pathways involving D-xylose, a naturally occurring plant polysaccharide.
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0006098	pentose-phosphate shunt	The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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		Glu A:186 - Pro A:187	[ RasMol ]

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	1gw9
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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

1xib	D-XYLOSE ISOMERASE (PH 7.4)
1xic	D-XYLOSE ISOMERASE COMPLEXED WITH D-XYLOSE (PH 9.0)
1xid	D-XYLOSE ISOMERASE COMPLEXED WITH L-ASCORBIC ACID, MN, AND MG (PH 7.4)
1xie	D-XYLOSE ISOMERASE COMPLEXED WITH 1,5- DIANHYDROSORBITOL (PH 7.4)
1xif	D-XYLOSE ISOMERASE COMPLEXED WITH GLUCOSE, MN, AND MG (PH 8.0)
1xig	D-XYLOSE ISOMERASE COMPLEXED WITH XYLITOL, MG, AND MN (PH 7.4)
1xih	D-XYLOSE ISOMERASE COMPLEXED WITH D-SORBITOL AND NO ADDED MN (PH 9.0)
1xii	D-XYLOSE ISOMERASE COMPLEXED WITH 300MM D- XYLULOSE AND MN (PH 8.0)
1xij	D-XYLOSE ISOMERASE COMPLEXED WITH THREONATE AND MN (PH 9.0)
1xis	XYLOSE ISOMERASE COMPLEX WITH MNCL2
2xis	XYLOSE ISOMERASE COMPLEX WITH XYLITOL
3xis	XYLOSE ISOMERASE COMPLEX WITH XYLOSE
4xis	XYLOSE ISOMERASE COMPLEX WITH XYLOSE AND MNCL2
8xia	D-XYLOSE ISOMERASE COMPLEX WITH D-XYLOSE
9xia	D-XYLOSE ISOMERASE COMPLEX WITH INACTIVATOR

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 33)

Sites (32, 32)