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(-) Description

Title :  CRYSTAL STRUCTURE OF GLUCOSE ISOMERASE
 
Authors :  M. K. Kim, Y. J. An, S. Lee, C. S. Jeong, S. S. Cha
Date :  07 Feb 13  (Deposition) - 30 Apr 14  (Release) - 30 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Alpha And Beta Proteins (A/B), Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. K. Kim, Y. J. An, S. Lee, C. S. Jeong, S. S. Cha
Crystal Structure Of Glucose Isomerase
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - XYLOSE ISOMERASE
    Chains: A
    EC Number: 5.3.1.5
    Organism Scientific: STREPTOMYCES RUBIGINOSUS
    Organism Taxid: 1929

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
3ZN4Ligand/IonZINC ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2MPD4Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
3ZN-1Ligand/IonZINC ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:217 , HIS A:220 , ASP A:255 , ASP A:257 , HOH A:924BINDING SITE FOR RESIDUE ZN A 401
2AC2SOFTWAREGLU A:181 , GLU A:217 , ASP A:245 , ASP A:287 , HOH A:923BINDING SITE FOR RESIDUE ZN A 402
3AC3SOFTWAREHIS A:49 , ACT A:408 , HOH A:925BINDING SITE FOR RESIDUE ZN A 403
4AC4SOFTWAREHIS A:71 , HOH A:909 , HOH A:910 , HOH A:911BINDING SITE FOR RESIDUE ZN A 404
5AC5SOFTWARETRP A:16 , PRO A:25 , PHE A:26 , HIS A:54 , THR A:95 , HOH A:555 , HOH A:608 , HOH A:762BINDING SITE FOR RESIDUE MPD A 405
6AC6SOFTWARETRP A:16 , HIS A:54 , PHE A:94 , TRP A:137 , ASP A:287 , HOH A:597 , HOH A:790BINDING SITE FOR RESIDUE MPD A 406
7AC7SOFTWARELYS A:159 , ARG A:205 , TRP A:237 , HOH A:840 , HOH A:860BINDING SITE FOR RESIDUE ACT A 407
8AC8SOFTWAREARG A:10 , SER A:281 , PRO A:283 , ZN A:403 , HOH A:925BINDING SITE FOR RESIDUE ACT A 408

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J4K)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Glu A:186 -Pro A:187

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J4K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J4K)

(-) Exons   (0, 0)

(no "Exon" information available for 4J4K)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:385
                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhh.eeeehhhhh...............hhhhhhhhhhhhh..eeeeehhhhh....hhhhhhhhhhhhhhhhhhhh.eeeeee.....hhhhh.......hhhhhhhhhhhhhhhhhhhhhh...eeee.....ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee.........ee...hhhhhhhhhh...hhh.eee..hhhhhhh...hhhhhhhhhhhh.....eee.................hhhhhhhhhhhhhhhh....eee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhh..hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j4k A   3 YQPTPEDRFTFGLWTVGWEGRDPFGDATRRALDPVESVRRLAELGAHGVTFHDDDLIPFGSSDSEREEHVKRFRQALDDTGMKVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAETYVAWGGREGAESGGAKDVRDALDRMKEAFDLLGEYVTSQGYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGIAQALWAGKLFHIDLNGQNGIKYDQDLRFGAGDLRAAFWLVDLLESAGYSGPRHFDFKPPRTEDFDGVWASAAGCMRNYLILKERAAAFRADPEVQEALRASRLDELARPTAADGLQALLDDRSAFEEFDVDAAAARGMAFERLDQLAMDHLLGAR 387
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4J4K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J4K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J4K)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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  XYLA_STRRU | P24300
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  5.3.1.5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        XYLA_STRRU | P24300: 1gw9 1mnz 1o1h 1oad 1xib 1xic 1xid 1xie 1xif 1xig 1xih 1xii 1xij 1xis 2g4j 2glk 2gub 2gve 2xis 3cwh 3gnx 3kbj 3kbm 3kbn 3kbs 3kbv 3kbw 3kcj 3kcl 3kco 3n4a 3qys 3qza 3u3h 3xis 4a8i 4a8l 4a8n 4a8r 4duo 4dvo 4e3v 4lnc 4qdp 4qdw 4qe1 4qe4 4qe5 4qee 4qeh 4us6 4w4q 4xis 4zb0 4zb2 4zb5 4zbc 5avh 5avn 5i7g 8xia 9xia

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4J4K)