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1GW9
Asym. Unit
Info
Asym.Unit (77 KB)
Biol.Unit 1 (276 KB)
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(1)
Title
:
TRI-IODIDE DERIVATIVE OF XYLOSE ISOMERASE FROM STREPTOMYCES RUBIGINOSUS
Authors
:
G. Evans, G. Bricogne
Date
:
13 Mar 02 (Deposition) - 06 Jun 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Isomerase, Pentose Shunt, Xylose Metabolism, Magnesium
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Evans, G. Bricogne
Triiodide Derivatization And Combinatorial Counter-Ion Replacement: Two Methods For Enhancing Phasing Signal Using Laboratory Cu Kalpha X-Ray Equipment
Acta Crystallogr. , Sect. D V. 58 976 2002
[
close entry info
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Hetero Components
(3, 33)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: IODIDE ION (IODa)
2aa: IODIDE ION (IODaa)
2ab: IODIDE ION (IODab)
2ac: IODIDE ION (IODac)
2b: IODIDE ION (IODb)
2c: IODIDE ION (IODc)
2d: IODIDE ION (IODd)
2e: IODIDE ION (IODe)
2f: IODIDE ION (IODf)
2g: IODIDE ION (IODg)
2h: IODIDE ION (IODh)
2i: IODIDE ION (IODi)
2j: IODIDE ION (IODj)
2k: IODIDE ION (IODk)
2l: IODIDE ION (IODl)
2m: IODIDE ION (IODm)
2n: IODIDE ION (IODn)
2o: IODIDE ION (IODo)
2p: IODIDE ION (IODp)
2q: IODIDE ION (IODq)
2r: IODIDE ION (IODr)
2s: IODIDE ION (IODs)
2t: IODIDE ION (IODt)
2u: IODIDE ION (IODu)
2v: IODIDE ION (IODv)
2w: IODIDE ION (IODw)
2x: IODIDE ION (IODx)
2y: IODIDE ION (IODy)
2z: IODIDE ION (IODz)
3a: BETA-L-XYLOPYRANOSE (LXCa)
3b: BETA-L-XYLOPYRANOSE (LXCb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
IOD
29
Ligand/Ion
IODIDE ION
3
LXC
2
Ligand/Ion
BETA-L-XYLOPYRANOSE
[
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Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:295 , ALA A:332 , ARG A:334 , ARG A:368 , GLY A:369 , ALA A:371 , HOH A:2270 , HOH A:2275 , HOH A:2342 , HOH A:2343
BINDING SITE FOR RESIDUE LXC A1389
02
AC2
SOFTWARE
PHE A:26 , HIS A:54 , TRP A:137 , GLU A:181 , GLU A:217 , HIS A:220 , ASP A:245 , ASP A:287 , CA A:1387 , HOH A:2245 , HOH A:2265 , HOH A:2344 , HOH A:2345 , HOH A:2346 , HOH A:2347
BINDING SITE FOR RESIDUE LXC A1390
03
AC3
SOFTWARE
GLU A:181 , GLU A:217 , ASP A:245 , ASP A:287 , LXC A:1390
BINDING SITE FOR RESIDUE CA A1387
04
AC4
SOFTWARE
GLU A:217 , HIS A:220 , ASP A:255 , ASP A:257 , HOH A:2243 , HOH A:2245
BINDING SITE FOR RESIDUE CA A1388
05
AC5
SOFTWARE
HIS A:49 , IOD A:1392
BINDING SITE FOR RESIDUE IOD A1391
06
AC6
SOFTWARE
IOD A:1391 , IOD A:1393
BINDING SITE FOR RESIDUE IOD A1392
07
AC7
SOFTWARE
IOD A:1392 , IOD A:1394
BINDING SITE FOR RESIDUE IOD A1393
08
AC8
SOFTWARE
GLU A:132 , IOD A:1393
BINDING SITE FOR RESIDUE IOD A1394
09
AC9
SOFTWARE
ALA A:201 , GLN A:234 , IOD A:1396
BINDING SITE FOR RESIDUE IOD A1395
10
BC1
SOFTWARE
GLU A:204 , ALA A:238 , IOD A:1395 , IOD A:1397
BINDING SITE FOR RESIDUE IOD A1396
11
BC2
SOFTWARE
LEU A:200 , GLU A:204 , LYS A:240 , IOD A:1396 , IOD A:1398
BINDING SITE FOR RESIDUE IOD A1397
12
BC3
SOFTWARE
GLU A:204 , IOD A:1397 , IOD A:1399
BINDING SITE FOR RESIDUE IOD A1398
13
BC4
SOFTWARE
GLU A:204 , PRO A:209 , LYS A:240 , IOD A:1398
BINDING SITE FOR RESIDUE IOD A1399
14
BC5
SOFTWARE
MET A:158 , IOD A:1401 , HOH A:2163
BINDING SITE FOR RESIDUE IOD A1400
15
BC6
SOFTWARE
PHE A:104 , IOD A:1400 , IOD A:1402 , IOD A:1404
BINDING SITE FOR RESIDUE IOD A1401
16
BC7
SOFTWARE
ALA A:136 , TRP A:137 , IOD A:1401 , HOH A:2104 , HOH A:2161 , HOH A:2162
BINDING SITE FOR RESIDUE IOD A1402
17
BC8
SOFTWARE
THR A:119 , LEU A:165 , HOH A:2104
BINDING SITE FOR RESIDUE IOD A1403
18
BC9
SOFTWARE
LEU A:93 , GLY A:103 , PHE A:104 , GLU A:141 , IOD A:1401
BINDING SITE FOR RESIDUE IOD A1404
19
CC1
SOFTWARE
PRO A:25 , IOD A:1406
BINDING SITE FOR RESIDUE IOD A1405
20
CC2
SOFTWARE
PRO A:25 , GLU A:186 , TYR A:254 , IOD A:1405 , HOH A:2205
BINDING SITE FOR RESIDUE IOD A1406
21
CC3
SOFTWARE
GLY A:239 , LYS A:240 , LEU A:241 , HOH A:2229 , HOH A:2233
BINDING SITE FOR RESIDUE IOD A1407
22
CC4
SOFTWARE
IOD A:1409
BINDING SITE FOR RESIDUE IOD A1408
23
CC5
SOFTWARE
IOD A:1408 , HOH A:2340
BINDING SITE FOR RESIDUE IOD A1409
24
CC6
SOFTWARE
GLN A:41 , IOD A:1412 , IOD A:1419
BINDING SITE FOR RESIDUE IOD A1411
25
CC7
SOFTWARE
GLU A:38 , IOD A:1411
BINDING SITE FOR RESIDUE IOD A1412
26
CC8
SOFTWARE
LEU A:193 , GLN A:234 , HOH A:2093
BINDING SITE FOR RESIDUE IOD A1413
27
CC9
SOFTWARE
GLY A:138 , MET A:158 , LEU A:192 , HOH A:2163 , HOH A:2202
BINDING SITE FOR RESIDUE IOD A1414
28
DC1
SOFTWARE
GLY A:263 , ARG A:266 , HOH A:2036 , HOH A:2167
BINDING SITE FOR RESIDUE IOD A1415
29
DC2
SOFTWARE
HIS A:71 , ARG A:74
BINDING SITE FOR RESIDUE IOD A1416
30
DC3
SOFTWARE
ASN A:227 , HOH A:2094
BINDING SITE FOR RESIDUE IOD A1417
31
DC4
SOFTWARE
ALA A:319 , HOH A:2341
BINDING SITE FOR RESIDUE IOD A1418
32
DC5
SOFTWARE
IOD A:1411
BINDING SITE FOR RESIDUE IOD A1419
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: XYLOSE_ISOMERASE (A:4-383)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
XYLOSE_ISOMERASE
PS51415
Xylose isomerase family profile.
XYLA_STRRU
4-383
1
A:4-383
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1gw9a_ (A:)
View:
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Classes
(
)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Xylose isomerase-like
(125)
Family
:
Xylose isomerase
(97)
Protein domain
:
D-xylose isomerase
(82)
Streptomyces rubiginosus [TaxId: 1929]
(31)
1a
d1gw9a_
A:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1gw9A00 (A:2-386)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Divalent-metal-dependent TIM barrel enzymes
(98)
Streptomyces rubiginosus. Organism_taxid: 1929
(21)
1a
1gw9A00
A:2-386
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein
Nucleic
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Sidechain
Hetero
Ligand
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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