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(-) Description

Title :  NMR STRUCTURES OF WHEAT NONSPECIFIC LIPID TRANSFER PROTEIN
 
Authors :  E. Gincel, J. P. Simorre, A. Caille, D. Marion, M. Ptak, F. Vovelle
Date :  29 Oct 00  (Deposition) - 22 Nov 00  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (15x)
Keywords :  4-Helix Winding, Lipid Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Gincel, J. P. Simorre, A. Caille, D. Marion, M. Ptak, F. Vovelle
Three-Dimensional Structure In Solution Of A Wheat Lipid-Transfer Protein From Multidimensional 1H-Nmr Data. A New Folding For Lipid Carriers.
Eur. J. Biochem. V. 226 413 1994
PubMed-ID: 8001559  |  Reference-DOI: 10.1111/J.1432-1033.1994.TB20066.X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NONSPECIFIC LIPID TRANSFER PROTEIN
    Chains: A
    Organ: SEEDS
    Organism Common: BREAD WHEAT
    Organism Scientific: TRITICUM AESTIVUM
    Organism Taxid: 4565

 Structural Features

(-) Chains, Units

  
NMR Structure (15x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1GH1)

(-) Sites  (0, 0)

(no "Site" information available for 1GH1)

(-) SS Bonds  (4, 4)

NMR Structure
No.Residues
1A:3 -A:50
2A:13 -A:27
3A:28 -A:73
4A:48 -A:87

(-) Cis Peptide Bonds  (1, 15)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15Gly A:22 -Pro A:23

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1GH1)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PLANT_LTPPS00597 Plant lipid transfer proteins signature.NLTP1_WHEAT92-113  1A:69-90

(-) Exons   (0, 0)

(no "Exon" information available for 1GH1)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:90
 aligned with NLTP1_WHEAT | P24296 from UniProtKB/Swiss-Prot  Length:113

    Alignment length:90
                                    33        43        53        63        73        83        93       103       113
          NLTP1_WHEAT    24 IDCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113
               SCOP domains d1gh1a_ A: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)                     SCOP domains
               CATH domains 1gh1A00 A:1-90 Plant lipid-transfer and hydrophobic proteins                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------PLANT_LTP  PDB: A:69-9 PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                 1gh1 A   1 IDCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV  90
                                    10        20        30        40        50        60        70        80        90
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1GH1)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (NLTP1_WHEAT | P24296)
molecular function
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
biological process
    GO:0006869    lipid transport    The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.

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  Cis Peptide Bonds
    Gly A:22 - Pro A:23   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NLTP1_WHEAT | P24296: 1bwo 1cz2

(-) Related Entries Specified in the PDB File

1486 1486 IS THE SAME PROTEIN COMPLEXED WITH PROSTAGLANDIN (NMR)
1afh 1AFH IS MAIZE NON SPECIFIC LIPID TRANSFER PROTEIN COMPLEX WITH LYSO-PC (NMR)
1azh 1AZH IS MAIZE NON SPECIFIC LIPID TRANSFER PROTEIN (NMR)
1be2 1BE2 IS BARLEY NON SPECIFIC LIPID TRANSFER PROTEIN COMPLEX WITH PALMITATE (NMR)
1bv2 1BV2 IS RICE NON SPECIFIC LIPID TRANSFER PROTEIN (NMR)
1bwo 1BWO IS THE SAME PROTEIN COMPLEXED WITH 2 LIPIDS (X-RAYS)
1cz2 1CZ2 IS THE SAME PROTEIN COMPLEXED WITH PROSTAGLANDIN (NMR)
1jtb 1JTB IS BARLEY NON SPECIFIC LIPID TRANSFER PROTEIN COMPLEX WITH PALMITOYL-COA (NMR)
1lip 1LIP IS BARLEY NON SPECIFIC LIPID TRANSFER PROTEIN (NMR)
1mzl 1MZL IS MAIZE NON SPECIFIC LIPID TRANSFER PROTEIN (X-RAYS)
1mzm 1MZM IS MAIZE NON SPECIFIC LIPID TRANSFER PROTEIN COMPLEX WITH PALMITATE (X-RAYS)
1rzl 1RZL IS RICE NON SPECIFIC LIPID TRANSFER PROTEIN (X-RAYS)