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(-) Description

Title :  LIPID TRANSFER PROTEIN FROM RICE SEEDS, NMR, 14 STRUCTURES
 
Authors :  J. Poznanski, P. Sodano, S. W. Suh, J. Y. Lee, M. Ptak, F. Vovelle
Date :  21 Sep 98  (Deposition) - 18 May 99  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (14x)
Keywords :  Lipid-Binding Protein, Lipid Transfer Protein, Rice, Molecular Modeling, Nmr (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Poznanski, P. Sodano, S. W. Suh, J. Y. Lee, M. Ptak, F. Vovelle
Solution Structure Of A Lipid Transfer Protein Extracted From Rice Seeds. Comparison With Homologous Proteins.
Eur. J. Biochem. V. 259 692 1999
PubMed-ID: 10092854  |  Reference-DOI: 10.1046/J.1432-1327.1999.00093.X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NONSPECIFIC LIPID TRANSFER PROTEIN
    Chains: A
    Organ: SEEDS
    Organism Common: RICE
    Organism Scientific: ORYZA SATIVA
    Organism Taxid: 4530

 Structural Features

(-) Chains, Units

  
NMR Structure (14x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1BV2)

(-) Sites  (0, 0)

(no "Site" information available for 1BV2)

(-) SS Bonds  (4, 4)

NMR Structure
No.Residues
1A:3 -A:50
2A:13 -A:27
3A:28 -A:73
4A:48 -A:87

(-) Cis Peptide Bonds  (1, 14)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14Gly A:22 -Pro A:23

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1BV2)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PLANT_LTPPS00597 Plant lipid transfer proteins signature.NLTP1_ORYSI94-115  1A:69-90
NLTP1_ORYSJ94-115  1A:69-90

(-) Exons   (0, 0)

(no "Exon" information available for 1BV2)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:91
 aligned with NLTP1_ORYSI | A2ZHF1 from UniProtKB/Swiss-Prot  Length:116

    Alignment length:91
                                    35        45        55        65        75        85        95       105       115 
          NLTP1_ORYSI    26 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRVS 116
               SCOP domains d1bv2a_ A: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)                      SCOP domains
               CATH domains 1bv2A00 A:1-91 Plant lipid-transfer and hydrophobic proteins                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh......hhhhhhhhhhhhh...hhhhhhhhhhhhhh...........hhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------PLANT_LTP  PDB: A:69-9- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 1bv2 A   1 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRVS  91
                                    10        20        30        40        50        60        70        80        90 


Chain A from PDB  Type:PROTEIN  Length:91
 aligned with NLTP1_ORYSJ | Q0IQK9 from UniProtKB/Swiss-Prot  Length:116

    Alignment length:91
                                    35        45        55        65        75        85        95       105       115 
          NLTP1_ORYSJ    26 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRVS 116
               SCOP domains d1bv2a_ A: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)                      SCOP domains
               CATH domains 1bv2A00 A:1-91 Plant lipid-transfer and hydrophobic proteins                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh......hhhhhhhhhhhhh...hhhhhhhhhhhhhh...........hhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------PLANT_LTP  PDB: A:69-9- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 1bv2 A   1 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRVS  91
                                    10        20        30        40        50        60        70        80        90
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1BV2)

(-) Gene Ontology  (3, 6)

NMR Structure(hide GO term definitions)
Chain A   (NLTP1_ORYSJ | Q0IQK9)
molecular function
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
biological process
    GO:0006869    lipid transport    The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.

Chain A   (NLTP1_ORYSI | A2ZHF1)
molecular function
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
biological process
    GO:0006869    lipid transport    The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.

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  Cis Peptide Bonds
    Gly A:22 - Pro A:23   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NLTP1_ORYSI | A2ZHF1: 1rzl 1uva 1uvb 1uvc
        NLTP1_ORYSJ | Q0IQK9: 1rzl 1uva 1uvb 1uvc

(-) Related Entries Specified in the PDB File

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