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(-) Description

Title :  THE STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND REGULATION OF GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA). GLUCOSE-1-PHOSPHATE COMPLEX.
 
Authors :  W. Blankenfeldt, M. Asuncion, J. S. Lam, J. H. Naismith
Date :  16 Oct 00  (Deposition) - 27 Dec 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  L-Rhamnose, Nucleotidyltransferase, Pyrophosphorylase, Thymidylyltransferase, Allostery (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Blankenfeldt, M. Asuncion, J. S. Lam, J. H. Naismith
The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla).
Embo J. V. 19 6652 2000
PubMed-ID: 11118200  |  Reference-DOI: 10.1093/EMBOJ/19.24.6652
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 2.7.7.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET23A(+)
    Expression System Strain: BL21(LAMBDA DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Synonym: GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA)

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 45)

Asymmetric Unit (3, 45)
No.NameCountTypeFull Name
1G1P8Ligand/IonALPHA-D-GLUCOSE-1-PHOSPHATE
2MSE24Mod. Amino AcidSELENOMETHIONINE
3SO413Ligand/IonSULFATE ION
Biological Unit 1 (3, 21)
No.NameCountTypeFull Name
1G1P4Ligand/IonALPHA-D-GLUCOSE-1-PHOSPHATE
2MSE12Mod. Amino AcidSELENOMETHIONINE
3SO45Ligand/IonSULFATE ION
Biological Unit 2 (3, 24)
No.NameCountTypeFull Name
1G1P4Ligand/IonALPHA-D-GLUCOSE-1-PHOSPHATE
2MSE12Mod. Amino AcidSELENOMETHIONINE
3SO48Ligand/IonSULFATE ION

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:88 , LEU A:108 , ASN A:111 , TYR A:145 , GLY A:146 , GLU A:161 , LYS A:162 , VAL A:172 , THR A:200BINDING SITE FOR RESIDUE G1P A 500
02AC2SOFTWARELEU B:88 , ASN B:111 , TYR B:145 , GLY B:146 , GLU B:161 , LYS B:162 , VAL B:172BINDING SITE FOR RESIDUE G1P B 501
03AC3SOFTWARELEU C:88 , LEU C:108 , ASN C:111 , TYR C:145 , GLY C:146 , GLU C:161 , LYS C:162 , VAL C:172BINDING SITE FOR RESIDUE G1P C 502
04AC4SOFTWARELEU D:88 , LEU D:108 , ASN D:111 , TYR D:145 , GLY D:146 , GLU D:161 , LYS D:162 , VAL D:172BINDING SITE FOR RESIDUE G1P D 503
05AC5SOFTWARELEU E:88 , ASN E:111 , TYR E:145 , GLY E:146 , GLU E:161 , LYS E:162 , VAL E:172 , THR E:200BINDING SITE FOR RESIDUE G1P E 504
06AC6SOFTWARELEU F:88 , ASN F:111 , TYR F:145 , GLY F:146 , GLU F:161 , LYS F:162 , VAL F:172 , ARG F:194BINDING SITE FOR RESIDUE G1P F 505
07AC7SOFTWARELEU G:88 , ASN G:111 , TYR G:145 , GLY G:146 , GLU G:161 , LYS G:162 , VAL G:172 , ARG G:194BINDING SITE FOR RESIDUE G1P G 506
08AC8SOFTWARELEU H:88 , LEU H:108 , ASN H:111 , TYR H:145 , GLY H:146 , GLU H:161 , LYS H:162 , VAL H:172 , ARG H:194BINDING SITE FOR RESIDUE G1P H 507
09AC9SOFTWAREHIS A:116 , ASP A:117 , GLY C:218 , ARG C:219 , GLY C:220BINDING SITE FOR RESIDUE SO4 A 600
10BC1SOFTWAREHIS B:116 , ASP B:117 , GLY D:218 , ARG D:219 , GLY D:220BINDING SITE FOR RESIDUE SO4 B 601
11BC2SOFTWAREGLY A:218 , ARG A:219 , GLY A:220 , HIS C:116 , ASP C:117BINDING SITE FOR RESIDUE SO4 C 602
12BC3SOFTWAREGLY B:218 , GLY B:220 , HIS D:116 , ASP D:117BINDING SITE FOR RESIDUE SO4 D 603
13BC4SOFTWAREHIS E:116 , ASP E:117 , GLY H:218 , GLY H:220BINDING SITE FOR RESIDUE SO4 E 604
14BC5SOFTWAREHIS F:116 , ASP F:117 , GLY G:218 , GLY G:220BINDING SITE FOR RESIDUE SO4 F 605
15BC6SOFTWAREGLY F:218 , ARG F:219 , GLY F:220 , HIS G:116 , ASP G:117BINDING SITE FOR RESIDUE SO4 G 606
16BC7SOFTWAREGLY E:218 , ARG E:219 , GLY E:220 , HIS H:116 , ASP H:117BINDING SITE FOR RESIDUE SO4 H 607
17BC8SOFTWAREARG D:128 , GLN D:129 , THR D:130BINDING SITE FOR RESIDUE SO4 D 608
18BC9SOFTWAREARG E:62BINDING SITE FOR RESIDUE SO4 E 609
19CC1SOFTWAREGLN F:129 , THR F:130BINDING SITE FOR RESIDUE SO4 F 610
20CC2SOFTWARESER F:12 , GLY F:13 , THR F:14 , ARG F:15BINDING SITE FOR RESIDUE SO4 F 611
21CC3SOFTWAREARG G:62 , ARG H:62BINDING SITE FOR RESIDUE SO4 G 612

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1G23)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1His A:17 -Pro A:18
2His B:17 -Pro B:18
3His C:17 -Pro C:18
4His D:17 -Pro D:18
5His E:17 -Pro E:18
6His F:17 -Pro F:18
7His G:17 -Pro G:18
8His H:17 -Pro H:18

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1G23)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1G23)

(-) Exons   (0, 0)

(no "Exon" information available for 1G23)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:292
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
         Q9HU22_PSEAE     2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1g23a_ A: RmlA (RfbA)                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1g23A00 A:2-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhh.hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhh....eeeeeee..hhhh.eeeee.....eeeeee........eee..eeee..hhhhhhhh.........hhhhhhhhhhhh..eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g23 A   2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPmIYYPLSTLmLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEImGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    11        21        31   |    41  |     51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211     | 221       231       241       251       261       271       281       291  
                                                            35-MSE   44-MSE                                                                                                                                                                      217-MSE                                                                        


Chain B from PDB  Type:PROTEIN  Length:292
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
         Q9HU22_PSEAE     2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1g23b_ B: RmlA (RfbA)                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1g23B00 B:2-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhh......hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee..hhhhhhhh.........hhhhhhhhhhhh..eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g23 B   2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPmIYYPLSTLmLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEImGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    11        21        31   |    41  |     51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211     | 221       231       241       251       261       271       281       291  
                                                            35-MSE   44-MSE                                                                                                                                                                      217-MSE                                                                        


Chain C from PDB  Type:PROTEIN  Length:292
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
         Q9HU22_PSEAE     2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1g23c_ C: RmlA (RfbA)                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1g23C00 C:2-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.........hhhhh.hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhh....eeeeeee..hhhh.eeeee.....eeeeee........eee..eeee..hhhhhhhh.........hhhhhhhhhhhh..eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g23 C   2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPmIYYPLSTLmLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEImGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    11        21        31   |    41  |     51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211     | 221       231       241       251       261       271       281       291  
                                                            35-MSE   44-MSE                                                                                                                                                                      217-MSE                                                                        


Chain D from PDB  Type:PROTEIN  Length:292
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
         Q9HU22_PSEAE     2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1g23d_ D: RmlA (RfbA)                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1g23D00 D:2-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.........hhhhh.hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.....hhhhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhh....eeeeeee..hhhh.eeeee.....eeeeee........eee..eeee..hhhhhhhh.........hhhhhhhhhhhh..eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g23 D   2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPmIYYPLSTLmLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEImGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    11        21        31   |    41  |     51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211     | 221       231       241       251       261       271       281       291  
                                                            35-MSE   44-MSE                                                                                                                                                                      217-MSE                                                                        


Chain E from PDB  Type:PROTEIN  Length:292
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
         Q9HU22_PSEAE     2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1g23e_ E: RmlA (RfbA)                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1g23E00 E:2-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhh.hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhh....eeeeeee..hhhh.eeeee.....eeeeee........eee..eeee..hhhhhhhh.........hhhhhhhhhhhh..eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g23 E   2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPmIYYPLSTLmLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEImGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    11        21        31   |    41  |     51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211     | 221       231       241       251       261       271       281       291  
                                                            35-MSE   44-MSE                                                                                                                                                                      217-MSE                                                                        


Chain F from PDB  Type:PROTEIN  Length:292
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
         Q9HU22_PSEAE     2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1g23f_ F: RmlA (RfbA)                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1g23F00 F:2-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhh.hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhh....eeeeeee..hhhh.eeeee.....eeeeee........eee..eeee..hhhhhhhh.........hhhhhhhhhhhh..eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g23 F   2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPmIYYPLSTLmLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEImGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    11        21        31   |    41  |     51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211     | 221       231       241       251       261       271       281       291  
                                                            35-MSE   44-MSE                                                                                                                                                                      217-MSE                                                                        


Chain G from PDB  Type:PROTEIN  Length:292
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
         Q9HU22_PSEAE     2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1g23g_ G: RmlA (RfbA)                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1g23G00 G:2-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...............hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eee..eeee..hhhhhhhh.........hhhhhhhhhhhh..eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g23 G   2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPmIYYPLSTLmLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEImGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    11        21        31   |    41  |     51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211     | 221       231       241       251       261       271       281       291  
                                                            35-MSE   44-MSE                                                                                                                                                                      217-MSE                                                                        


Chain H from PDB  Type:PROTEIN  Length:292
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
         Q9HU22_PSEAE     2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1g23h_ H: RmlA (RfbA)                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1g23H00 H:2-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhh......hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee..hhhhhhhh.........hhhhhhhhhhhh..eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g23 H   2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPmIYYPLSTLmLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEImGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    11        21        31   |    41  |     51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211     | 221       231       241       251       261       271       281       291  
                                                            35-MSE   44-MSE                                                                                                                                                                      217-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1G23)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q9HU22_PSEAE | Q9HU22)
molecular function
    GO:0008879    glucose-1-phosphate thymidylyltransferase activity    Catalysis of the reaction: alpha-D-glucose 1-phosphate + dTTP = diphosphate + dTDP-glucose.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
    GO:0045226    extracellular polysaccharide biosynthetic process    The chemical reactions and pathways resulting in the formation of polysaccharides used in extracellular structures.

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  1g23
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  Q9HU22_PSEAE | Q9HU22
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9HU22_PSEAE | Q9HU22: 1fxo 1fzw 1g0r 1g1l 1g2v 1g3l 3zlk 3zll 4arw 4asj 4asy 4b2w 4b2x 4b3u 4b42 4b4b 4b4g 4b4m 4b5b 5fts 5ftv 5fu0 5fu8 5fuh 5fye

(-) Related Entries Specified in the PDB File

1fxo 1FXO IS RMLA IN COMPLEX WITH 2'-DEOXY-THYMIDINE-5'- MONOPHOSPHATE (TMP)
1fzw 1FZW IS RMLA APO ENZYME
1g0r 1G0R IS RMLA IN COMPLEX WITH 2'-DEOXY-THIMIDINE (THM) AND ALPHA-D-GLUCOSE-1-PHOSPHATE (G1P)
1g1l 1G1L IS RMLA IN COMPLEX WITH 2'-DEOXY-THYMIDINE-ALPHA-D- GLUCOSE (TDG)
1g2v 1G2V IS RMLA IN COMPLEX WITH 2'-DEOXY-THYMIDINE-5'- TRIPHOSPHATE (TTP)
1g31 1G31 IS RMLA IN COMPLEX WITH 2'-DEOXY-THYMIDINE-BETA-L- RHAMNOSE (TDR)