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(-) Description

Title :  THE STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND REGULATION OF GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA). THYMIDINE/GLUCOSE-1-PHOSPHATE COMPLEX.
 
Authors :  W. Blankenfeldt, M. Asuncion, J. S. Lam, J. H. Naismith
Date :  07 Oct 00  (Deposition) - 27 Dec 00  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.87
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  L-Rhamnose, Nucleotidyltransferase, Pyrophosphorylase, Thymidylyltransferase, Allostery, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Blankenfeldt, M. Asuncion, J. S. Lam, J. H. Naismith
The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla).
Embo J. V. 19 6652 2000
PubMed-ID: 11118200  |  Reference-DOI: 10.1093/EMBOJ/19.24.6652
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 2.7.7.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET23(+)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Synonym: GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA)

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 46)

Asymmetric Unit (3, 46)
No.NameCountTypeFull Name
1G1P7Ligand/IonALPHA-D-GLUCOSE-1-PHOSPHATE
2SO423Ligand/IonSULFATE ION
3THM16Ligand/IonTHYMIDINE
Biological Unit 1 (3, 24)
No.NameCountTypeFull Name
1G1P4Ligand/IonALPHA-D-GLUCOSE-1-PHOSPHATE
2SO412Ligand/IonSULFATE ION
3THM8Ligand/IonTHYMIDINE
Biological Unit 2 (3, 22)
No.NameCountTypeFull Name
1G1P3Ligand/IonALPHA-D-GLUCOSE-1-PHOSPHATE
2SO411Ligand/IonSULFATE ION
3THM8Ligand/IonTHYMIDINE

(-) Sites  (46, 46)

Asymmetric Unit (46, 46)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:88 , LEU A:108 , ASN A:111 , TYR A:145 , GLY A:146 , GLU A:161 , LYS A:162 , VAL A:172 , THR A:200 , TRP A:223 , THM A:2530 , HOH A:2564 , HOH A:2623 , HOH A:2688 , HOH A:2818BINDING SITE FOR RESIDUE G1P A 2500
02AC2SOFTWARELEU B:88 , ASN B:111 , TYR B:145 , GLY B:146 , GLU B:161 , LYS B:162 , VAL B:172 , THM B:2531 , HOH B:2608 , HOH B:2627 , HOH B:2846BINDING SITE FOR RESIDUE G1P B 2501
03AC3SOFTWAREASN C:111 , TYR C:145 , GLY C:146 , GLU C:161 , LYS C:162 , VAL C:172 , ARG C:194 , THR C:200 , TRP C:223 , THM C:2532 , HOH C:2615 , HOH C:2812BINDING SITE FOR RESIDUE G1P C 2502
04AC4SOFTWARELEU D:88 , LEU D:108 , ASN D:111 , TYR D:145 , GLY D:146 , GLU D:161 , LYS D:162 , VAL D:172 , TRP D:223 , THM D:2533 , HOH D:2562BINDING SITE FOR RESIDUE G1P D 2503
05AC5SOFTWARELEU E:88 , LEU E:108 , ASN E:111 , TYR E:145 , GLY E:146 , GLU E:161 , LYS E:162 , VAL E:172 , THR E:200 , TRP E:223 , THM E:2534 , HOH E:2571BINDING SITE FOR RESIDUE G1P E 2504
06AC6SOFTWARELEU G:88 , LEU G:108 , ASN G:111 , TYR G:145 , GLY G:146 , GLU G:161 , LYS G:162 , VAL G:172 , THM G:2536 , HOH G:2572 , HOH G:2685 , HOH G:2689 , HOH G:2870BINDING SITE FOR RESIDUE G1P G 2505
07AC7SOFTWARELEU H:88 , ASN H:111 , TYR H:145 , GLY H:146 , GLU H:161 , LYS H:162 , VAL H:172 , TRP H:223 , ASP H:225 , THM H:2537 , HOH H:2570 , HOH H:2769 , HOH H:2827 , HOH H:2828 , HOH H:2829BINDING SITE FOR RESIDUE G1P H 2506
08AC8SOFTWARESER A:12 , GLY A:13 , THR A:14 , ARG A:15 , HOH A:2728 , HOH A:2824BINDING SITE FOR RESIDUE SO4 A 2507
09AC9SOFTWAREHIS A:116 , ASP A:117 , THM A:2538 , HOH A:2592 , HOH A:2621 , HOH A:2749 , HOH A:2782 , HOH A:2806 , GLY C:218 , ARG C:219 , GLY C:220BINDING SITE FOR RESIDUE SO4 A 2508
10BC1SOFTWAREASP C:151 , GLN C:152 , HOH C:2620 , HOH C:2745 , ARG G:128 , GLU G:215 , HOH G:2613BINDING SITE FOR RESIDUE SO4 C 2509
11BC2SOFTWARESER B:12 , GLY B:13 , THR B:14 , ARG B:15 , LYS B:25 , HOH B:2813BINDING SITE FOR RESIDUE SO4 B 2510
12BC3SOFTWAREHIS B:116 , ASP B:117 , THM B:2539 , HOH B:2588 , HOH B:2698 , HOH B:2705 , HOH B:2772 , HOH B:2776 , GLY D:218 , ARG D:219 , GLY D:220BINDING SITE FOR RESIDUE SO4 B 2511
13BC4SOFTWAREASP D:151 , GLN D:152 , HOH D:2614 , HOH D:2725 , HOH D:2798 , ARG H:128 , GLU H:215 , HOH H:2623BINDING SITE FOR RESIDUE SO4 D 2512
14BC5SOFTWAREGLY A:218 , ARG A:219 , GLY A:220 , HIS C:116 , ASP C:117 , THM C:2540 , HOH C:2566 , HOH C:2609 , HOH C:2685 , HOH C:2776BINDING SITE FOR RESIDUE SO4 C 2513
15BC6SOFTWAREARG C:62 , ARG D:62 , HOH D:2638BINDING SITE FOR RESIDUE SO4 D 2514
16BC7SOFTWAREARG C:128 , GLN C:129 , THR C:130BINDING SITE FOR RESIDUE SO4 C 2515
17BC8SOFTWAREGLY B:218 , ARG B:219 , GLY B:220 , HIS D:116 , ASP D:117 , THM D:2541 , HOH D:2558 , HOH D:2598 , HOH D:2635 , HOH D:2705BINDING SITE FOR RESIDUE SO4 D 2516
18BC9SOFTWAREGLN D:127 , ARG D:128 , GLN D:129 , THR D:130BINDING SITE FOR RESIDUE SO4 D 2517
19CC1SOFTWAREHIS E:116 , ASP E:117 , THM E:2542 , GLY H:218 , ARG H:219 , GLY H:220 , HOH H:2620 , HOH H:2671BINDING SITE FOR RESIDUE SO4 H 2518
20CC2SOFTWAREARG E:62 , ARG F:62 , HOH F:2735 , HOH F:2798BINDING SITE FOR RESIDUE SO4 F 2519
21CC3SOFTWAREGLN E:127 , ARG E:128 , GLN E:129 , THR E:130BINDING SITE FOR RESIDUE SO4 E 2520
22CC4SOFTWAREHIS F:116 , ASP F:117 , THM F:2543 , HOH F:2555 , HOH F:2731 , HOH F:2736 , HOH F:2778 , GLY G:218 , ARG G:219 , GLY G:220BINDING SITE FOR RESIDUE SO4 F 2521
23CC5SOFTWAREGLN F:127 , ARG F:128 , GLN F:129 , THR F:130BINDING SITE FOR RESIDUE SO4 F 2522
24CC6SOFTWAREGLY F:218 , ARG F:219 , GLY F:220 , HIS G:116 , ASP G:117 , THM G:2544 , HOH G:2578 , HOH G:2690 , HOH G:2733 , HOH G:2805BINDING SITE FOR RESIDUE SO4 G 2523
25CC7SOFTWAREARG A:128 , GLU A:215 , HOH A:2690 , HOH A:2775 , ASP F:151 , GLN F:152 , HOH F:2719 , HOH F:2784BINDING SITE FOR RESIDUE SO4 F 2524
26CC8SOFTWAREGLU G:160 , GLU G:161 , ARG G:194 , ARG G:204 , HOH G:2643 , HOH G:2707 , HOH G:2742BINDING SITE FOR RESIDUE SO4 G 2525
27CC9SOFTWAREGLY H:11 , SER H:12 , GLY H:13 , LYS H:25 , THM H:2537 , HOH H:2628 , HOH H:2680 , HOH H:2826BINDING SITE FOR RESIDUE SO4 H 2526
28DC1SOFTWAREGLY E:218 , ARG E:219 , GLY E:220 , HIS H:116 , ASP H:117 , THM H:2545 , HOH H:2595 , HOH H:2763BINDING SITE FOR RESIDUE SO4 E 2527
29DC2SOFTWAREARG B:128 , GLU B:215 , HOH B:2606 , HOH B:2723 , ASP E:151 , GLN E:152BINDING SITE FOR RESIDUE SO4 B 2528
30DC3SOFTWAREGLU H:160 , GLU H:161 , ARG H:204 , HOH H:2625BINDING SITE FOR RESIDUE SO4 H 2529
31DC4SOFTWARELEU A:8 , GLY A:10 , GLY A:11 , GLN A:26 , GLN A:82 , PRO A:85 , ASP A:86 , GLY A:87 , LEU A:88 , GLY A:109 , ASP A:110 , G1P A:2500 , HOH A:2824BINDING SITE FOR RESIDUE THM A 2530
32DC5SOFTWARELEU B:8 , GLY B:10 , GLY B:11 , GLN B:26 , GLN B:82 , PRO B:85 , ASP B:86 , GLY B:87 , GLY B:109 , ASP B:110 , GLU B:196 , G1P B:2501BINDING SITE FOR RESIDUE THM B 2531
33DC6SOFTWARELEU C:8 , GLY C:10 , GLY C:11 , GLN C:26 , GLN C:82 , PRO C:85 , ASP C:86 , GLY C:87 , LEU C:88 , GLY C:109 , ASP C:110 , G1P C:2502BINDING SITE FOR RESIDUE THM C 2532
34DC7SOFTWARELEU D:8 , ALA D:9 , GLY D:10 , GLY D:11 , GLN D:26 , GLN D:82 , PRO D:85 , ASP D:86 , GLY D:87 , LEU D:88 , GLY D:109 , ASP D:110 , G1P D:2503BINDING SITE FOR RESIDUE THM D 2533
35DC8SOFTWARELEU E:8 , GLY E:10 , GLY E:11 , GLN E:26 , GLN E:82 , PRO E:85 , ASP E:86 , GLY E:87 , LEU E:88 , ASP E:110 , G1P E:2504BINDING SITE FOR RESIDUE THM E 2534
36DC9SOFTWARELEU F:8 , GLY F:10 , GLY F:11 , LYS F:25 , GLN F:26 , GLN F:82 , PRO F:85 , ASP F:86 , GLY F:87 , LEU F:88 , GLY F:109 , ASP F:110BINDING SITE FOR RESIDUE THM F 2535
37EC1SOFTWARELEU G:8 , GLY G:10 , GLY G:11 , GLN G:26 , GLN G:82 , PRO G:85 , ASP G:86 , GLY G:87 , LEU G:88 , GLY G:109 , ASP G:110 , G1P G:2505 , HOH G:2685BINDING SITE FOR RESIDUE THM G 2536
38EC2SOFTWARELEU H:8 , GLY H:10 , GLY H:11 , GLN H:26 , GLN H:82 , PRO H:85 , ASP H:86 , GLY H:87 , LEU H:88 , GLY H:109 , ASP H:110 , G1P H:2506 , SO4 H:2526BINDING SITE FOR RESIDUE THM H 2537
39EC3SOFTWARELEU A:45 , TYR A:114 , GLY A:115 , VAL A:250 , ALA A:251 , GLU A:255 , ILE A:256 , ARG A:259 , SO4 A:2508 , HOH A:2558 , HOH A:2565 , HOH A:2581 , HOH A:2663 , ARG C:219 , GLY C:220BINDING SITE FOR RESIDUE THM A 2538
40EC4SOFTWARELEU B:45 , TYR B:114 , GLY B:115 , VAL B:250 , ALA B:251 , GLU B:255 , ILE B:256 , SO4 B:2511 , HOH B:2558 , HOH B:2576 , HOH B:2751 , HOH B:2842 , ARG D:219 , GLY D:220BINDING SITE FOR RESIDUE THM B 2539
41EC5SOFTWAREARG A:219 , LEU C:45 , TYR C:114 , GLY C:115 , VAL C:250 , ALA C:251 , GLU C:255 , ILE C:256 , ARG C:259 , SO4 C:2513 , HOH C:2542 , HOH C:2559 , HOH C:2584BINDING SITE FOR RESIDUE THM C 2540
42EC6SOFTWAREARG B:219 , LEU D:45 , TYR D:114 , GLY D:115 , VAL D:250 , ALA D:251 , GLU D:255 , ILE D:256 , SO4 D:2516 , HOH D:2550 , HOH D:2568 , HOH D:2577 , HOH D:2685BINDING SITE FOR RESIDUE THM D 2541
43EC7SOFTWARELEU E:45 , TYR E:114 , GLY E:115 , VAL E:250 , ALA E:251 , GLU E:255 , ILE E:256 , ARG E:259 , HOH E:2548 , HOH E:2555 , HOH E:2563 , HOH E:2707 , ARG H:219 , GLY H:220 , SO4 H:2518BINDING SITE FOR RESIDUE THM E 2542
44EC8SOFTWARELEU F:45 , TYR F:114 , GLY F:115 , VAL F:250 , ALA F:251 , GLU F:255 , SO4 F:2521 , HOH F:2545 , HOH F:2613 , HOH F:2618 , ARG G:219BINDING SITE FOR RESIDUE THM F 2543
45EC9SOFTWAREARG F:219 , GLY F:220 , LEU G:45 , TYR G:114 , GLY G:115 , VAL G:250 , ALA G:251 , GLU G:255 , ILE G:256 , ARG G:259 , SO4 G:2523 , HOH G:2559 , HOH G:2568 , HOH G:2592BINDING SITE FOR RESIDUE THM G 2544
46FC1SOFTWAREARG E:219 , GLY E:220 , SO4 E:2527 , LEU H:45 , TYR H:114 , GLY H:115 , VAL H:250 , ALA H:251 , GLU H:255 , ILE H:256 , ARG H:259 , HOH H:2569 , HOH H:2572 , HOH H:2577BINDING SITE FOR RESIDUE THM H 2545

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1G0R)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1His A:17 -Pro A:18
2His B:17 -Pro B:18
3His C:17 -Pro C:18
4His D:17 -Pro D:18
5His E:17 -Pro E:18
6His F:17 -Pro F:18
7His G:17 -Pro G:18
8His H:17 -Pro H:18

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1G0R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1G0R)

(-) Exons   (0, 0)

(no "Exon" information available for 1G0R)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:292
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
         Q9HU22_PSEAE     2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1g0ra_ A: RmlA (RfbA)                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1g0rA00 A:2-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eee..eeee..hhhhhhhh.........hhhhhhhhhhhh..eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g0r A   2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  


Chain B from PDB  Type:PROTEIN  Length:292
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
         Q9HU22_PSEAE     2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1g0rb_ B: RmlA (RfbA)                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1g0rB00 B:2-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.........hhhhh......ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhh....eeeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee..hhhhhhhh.........hhhhhhhhhhhh..eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g0r B   2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  


Chain C from PDB  Type:PROTEIN  Length:292
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
         Q9HU22_PSEAE     2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1g0rc_ C: RmlA (RfbA)                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1g0rC00 C:2-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.........hhhhhhhhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.....hhhhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee..hhhhhhhhh........hhhhhhhhhhh...eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g0r C   2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  


Chain D from PDB  Type:PROTEIN  Length:292
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
         Q9HU22_PSEAE     2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1g0rd_ D: RmlA (RfbA)                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1g0rD00 D:2-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...............hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee..hhhhhhhhh........hhhhhhhhhhh...eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g0r D   2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  


Chain E from PDB  Type:PROTEIN  Length:292
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
         Q9HU22_PSEAE     2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1g0re_ E: RmlA (RfbA)                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1g0rE00 E:2-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhh......hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.....hhhhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eee..eeee..hhhhhhhh.........hhhhhhhhhhh...eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g0r E   2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  


Chain F from PDB  Type:PROTEIN  Length:293
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:293
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290   
         Q9HU22_PSEAE     1 MKRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1g0rf_ F: RmlA (RfbA)                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1g0rF00 F:1-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee...hhhhhhhhhh.hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee..hhhhhhhh.........hhhhhhhhhhh...eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g0r F   1 MKRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290   


Chain G from PDB  Type:PROTEIN  Length:292
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
         Q9HU22_PSEAE     2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1g0rg_ G: RmlA (RfbA)                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1g0rG00 G:2-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhh.....ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.....hhhhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhh....eeeeeee..hhhh.eeeee.....eeeeee........eee..eeee..hhhhhhhh.........hhhhhhhhhhhh..eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g0r G   2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  


Chain H from PDB  Type:PROTEIN  Length:292
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
         Q9HU22_PSEAE     2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1g0rh_ H: RmlA (RfbA)                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1g0rH00 H:2-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhh......hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.....hhhhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee..hhhhhhhh.........hhhhhhhhhhhh..eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g0r H   2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1G0R)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q9HU22_PSEAE | Q9HU22)
molecular function
    GO:0008879    glucose-1-phosphate thymidylyltransferase activity    Catalysis of the reaction: alpha-D-glucose 1-phosphate + dTTP = diphosphate + dTDP-glucose.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
    GO:0045226    extracellular polysaccharide biosynthetic process    The chemical reactions and pathways resulting in the formation of polysaccharides used in extracellular structures.

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  1g0r
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  Q9HU22_PSEAE | Q9HU22
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  2.7.7.24
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9HU22_PSEAE | Q9HU22: 1fxo 1fzw 1g1l 1g23 1g2v 1g3l 3zlk 3zll 4arw 4asj 4asy 4b2w 4b2x 4b3u 4b42 4b4b 4b4g 4b4m 4b5b 5fts 5ftv 5fu0 5fu8 5fuh 5fye

(-) Related Entries Specified in the PDB File

1fxo 1FXO IS RMLA IN COMPLEX WITH TMP
1fzw 1FZW IS RMLA APO-ENZYME
1g1l 1G1L IS RMLA IN COMPLEX WITH 2'-DEOXY-THYMIDINE-ALPHA-D- GLUCOSE (TDG)
1g23 1G23 IS RMLA IN COMPLEX WITH ALPHA-D-GLUCOSE-1-PHOSPHATE (G1P)
1g2v 1G2V IS RMLA IN COMPLEX WITH 2'-DEOXY-THYMIDINE-5'- TRIPHOSPHATE (TTP)
1g31 1G31 IS RMLA IN COMPLEX WITH 2'-DEOXY-THYMIDINE-BETA-L- RHAMNOSE (TDR)